mRNA_P-littoralis_Contig11.194.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.194.1
Unique NamemRNA_P-littoralis_Contig11.194.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.194.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.990e-16
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 RFVRGQPGNNLPSGHTGDDAIDNLLDGLYARNAVSAEAPMLEKDLVESPPGGGGAKPGTEKENAG 195
            R+V+GQPG NLPSG TGDDAI+NLLDGLY++   SAE+P+ E DLVES P   G K   EK + G
Sbjct:  141 RYVKGQPGGNLPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADGG 205
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BLAST of mRNA_P-littoralis_Contig11.194.1 vs. uniprot
Match: A0A6H5JUN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN8_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.700e-5
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 FVRGQPGNNLPSGHTGDDAIDNLLDGLYARNAVSAEAPMLEKDLVESPPGGGGAKPGTEKEN 189
            FV GQPG+ LPSG  GDDAI+ LLDG+Y   + +  A    +D +E    GGG   G E ++
Sbjct:   38 FVEGQPGDQLPSGSQGDDAIEYLLDGVYHMESGTGNA----EDPIELEERGGGEGEGWEDDS 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.990e-1661.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUN8_9PHAE2.700e-545.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:1002787..1003034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size249
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.3732326-CDS-P-littoralis_Contig11:1002788..10030341680789431.3732326-CDS-P-littoralis_Contig11:1002788..1003034Pylaiella littoralis U1_48CDSP-littoralis_Contig11 1002789..1003034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.194.1prot_P-littoralis_Contig11.194.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 1002789..1003034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.194.1

>prot_P-littoralis_Contig11.194.1 ID=prot_P-littoralis_Contig11.194.1|Name=mRNA_P-littoralis_Contig11.194.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
RFVRGQPGNNLPSGHTGDDAIDNLLDGLYARNAVSAEAPMLEKDLVESPP
GGGGAKPGTEKENAGRGGARETSQESVDGGAA
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mRNA from alignment at P-littoralis_Contig11:1002787..1003034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.194.1 ID=mRNA_P-littoralis_Contig11.194.1|Name=mRNA_P-littoralis_Contig11.194.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=248bp|location=Sequence derived from alignment at P-littoralis_Contig11:1002787..1003034- (Pylaiella littoralis U1_48)
AGATTCGTCAGGGGCCAGCCGGGGAACAACCTTCCGTCTGGCCATACTGG
TGACGACGCCATCGATAACCTACTCGACGGGCTGTACGCCCGGAACGCCG
TCTCGGCAGAAGCCCCCATGCTGGAGAAGGATCTCGTGGAGTCTCCTCCT
GGCGGAGGTGGGGCAAAGCCGGGGACGGAGAAGGAGAACGCTGGACGGGG
AGGTGCGAGGGAAACTTCACAGGAAAGCGTCGACGGAGGGGCAGCCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:1002787..1003034-

>mRNA_P-littoralis_Contig11.194.1 ID=mRNA_P-littoralis_Contig11.194.1|Name=mRNA_P-littoralis_Contig11.194.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig11:1002787..1003034- (Pylaiella littoralis U1_48)
AGATTCGTCAGGGGCCAGCCGGGGAACAACCTTCCGTCTGGCCATACTGG
TGACGACGCCATCGATAACCTACTCGACGGGCTGTACGCCCGGAACGCCG
TCTCGGCAGAAGCCCCCATGCTGGAGAAGGATCTCGTGGAGTCTCCTCCT
GGCGGAGGTGGGGCAAAGCCGGGGACGGAGAAGGAGAACGCTGGACGGGG
AGGTGCGAGGGAAACTTCACAGGAAAGCGTCGACGGAGGGGCAGCC
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