mRNA_P-littoralis_Contig11.193.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.193.1
Unique NamemRNA_P-littoralis_Contig11.193.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.000e-17
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    4 ESETDSGEVGTGGNLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 255
            ESET+ G VG+ GNL STAIRTFAGAGE QSRA+V+K+ A V +  A E FRQ+R+ Q +++  AV+TL+D+V A++ LDEEAA
Sbjct:  321 ESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAA 404
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BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.690e-11
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 255
            +L S+AIR FAGAGE QSRA+VKKE AAV A  AQE+  + +   T KLV AV+ LS AVV++Q LDEEAA
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAA 133
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BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.460e-11
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 255
            +L S+AIR FAGAGE QSRA+VKKE AAV A  AQE+ R+ +   T  LV AV  LS AVV++Q LDEEAA
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAA 133
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BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.360e-10
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQ---TEKLVGAVQTLSDAVVAKQRLDEEAA 255
            +L S+AIR FAG GE QSRA+VKKE AAV A  AQE+  Q R  Q   T KLV AV+ LS AVV++Q LDEEAA
Sbjct:  189 DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAA 262
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BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.740e-10
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   46 LDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 255
            L S+AIRTFAGA E QSRA+VK E  AV A  AQE+ R+ +   T KLV AV+ LS AVV++Q LDE+AA
Sbjct:  165 LSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234
[Close]
BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.030e-9
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   43 NLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQEKFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAA 255
            +L S+AIR FAG GE QSRA++KKE A V A  AQE+ R+ +   T KLV AV  LS AVV+ Q LDEEAA
Sbjct:  150 DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAA 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.000e-1759.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3M7_9PHAE1.690e-1161.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE2.460e-1161.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE1.360e-1062.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE1.740e-1060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE1.030e-959.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:1002221..1002479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.3460226-CDS-P-littoralis_Contig11:1002221..10024791680789431.3460226-CDS-P-littoralis_Contig11:1002221..1002479Pylaiella littoralis U1_48CDSP-littoralis_Contig11 1002222..1002479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.193.1prot_P-littoralis_Contig11.193.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 1002222..1002479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.193.1

>prot_P-littoralis_Contig11.193.1 ID=prot_P-littoralis_Contig11.193.1|Name=mRNA_P-littoralis_Contig11.193.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
EESETDSGEVGTGGNLDSTAIRTFAGAGEAQSRAKVKKETAAVHANVAQE
KFRQQRMGQTEKLVGAVQTLSDAVVAKQRLDEEAAG
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mRNA from alignment at P-littoralis_Contig11:1002221..1002479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.193.1 ID=mRNA_P-littoralis_Contig11.193.1|Name=mRNA_P-littoralis_Contig11.193.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=259bp|location=Sequence derived from alignment at P-littoralis_Contig11:1002221..1002479- (Pylaiella littoralis U1_48)
GAGGAGAGCGAGACTGACTCGGGCGAGGTGGGGACCGGCGGCAACCTTGA
CTCGACGGCCATCCGGACGTTCGCCGGCGCCGGTGAGGCTCAAAGCCGAG
CGAAGGTCAAGAAGGAAACCGCGGCGGTGCACGCAAACGTCGCGCAAGAG
AAGTTTCGCCAACAAAGAATGGGCCAAACAGAAAAACTGGTAGGGGCCGT
GCAGACGCTGTCGGACGCCGTTGTCGCGAAGCAGCGTCTGGACGAAGAGG
CCGCCGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:1002221..1002479-

>mRNA_P-littoralis_Contig11.193.1 ID=mRNA_P-littoralis_Contig11.193.1|Name=mRNA_P-littoralis_Contig11.193.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig11:1002221..1002479- (Pylaiella littoralis U1_48)
GAGGAGAGCGAGACTGACTCGGGCGAGGTGGGGACCGGCGGCAACCTTGA
CTCGACGGCCATCCGGACGTTCGCCGGCGCCGGTGAGGCTCAAAGCCGAG
CGAAGGTCAAGAAGGAAACCGCGGCGGTGCACGCAAACGTCGCGCAAGAG
AAGTTTCGCCAACAAAGAATGGGCCAAACAGAAAAACTGGTAGGGGCCGT
GCAGACGCTGTCGGACGCCGTTGTCGCGAAGCAGCGTCTGGACGAAGAGG
CCGCCGGT
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