mRNA_P-littoralis_Contig11.180.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.180.1
Unique NamemRNA_P-littoralis_Contig11.180.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.180.1 vs. uniprot
Match: D8LI04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI04_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.230e-9
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:  351 PGVRRAGRVAGKAWKKKHGVEGRTKDMSDEQKKEIRAVKRQAREAFK 491
            PGVRRAGRVAGKAWKK+HG+ G+ KD++ +QKK+IR  KR+AR AF+
Sbjct:   87 PGVRRAGRVAGKAWKKEHGILGKIKDLNPQQKKDIRTAKREARMAFR 133
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BLAST of mRNA_P-littoralis_Contig11.180.1 vs. uniprot
Match: D8LI05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI05_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.540e-7
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 3 
Query:  339 EGHCPGVRRAGRVAGKAWKKKHGVEGRTKDMSDEQKKEIRAVKRQAREAFKAA 497
            E  CPG++RAGRVA KAWKK+ G +GR +DM+  QKKE+R V ++AR AF+ A
Sbjct:   80 EEKCPGLQRAGRVAAKAWKKRTGAQGRIRDMTPAQKKEVREVVKKARVAFRDA 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI04_ECTSI2.230e-968.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI05_ECTSI1.540e-758.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:972911..977559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2067
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_001240.1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.1348748-UTR-P-littoralis_Contig11:972910..9729901680789431.1348748-UTR-P-littoralis_Contig11:972910..972990Pylaiella littoralis U1_48UTRP-littoralis_Contig11 972911..972990 +
1680789431.1805973-UTR-P-littoralis_Contig11:976001..9775591680789431.1805973-UTR-P-littoralis_Contig11:976001..977559Pylaiella littoralis U1_48UTRP-littoralis_Contig11 976002..977559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.1433194-CDS-P-littoralis_Contig11:972990..9730741680789431.1433194-CDS-P-littoralis_Contig11:972990..973074Pylaiella littoralis U1_48CDSP-littoralis_Contig11 972991..973074 +
1680789431.151343-CDS-P-littoralis_Contig11:974765..9749241680789431.151343-CDS-P-littoralis_Contig11:974765..974924Pylaiella littoralis U1_48CDSP-littoralis_Contig11 974766..974924 +
1680789431.1598213-CDS-P-littoralis_Contig11:975352..9754751680789431.1598213-CDS-P-littoralis_Contig11:975352..975475Pylaiella littoralis U1_48CDSP-littoralis_Contig11 975353..975475 +
1680789431.1698775-CDS-P-littoralis_Contig11:975938..9760011680789431.1698775-CDS-P-littoralis_Contig11:975938..976001Pylaiella littoralis U1_48CDSP-littoralis_Contig11 975939..976001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.180.1prot_P-littoralis_Contig11.180.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 972991..976001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.180.1

>prot_P-littoralis_Contig11.180.1 ID=prot_P-littoralis_Contig11.180.1|Name=mRNA_P-littoralis_Contig11.180.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MPGQDEEHKAGAGKQGHEGEHGKACHEHGHKGGRGEGPGGRGGRGGGKGC
GRGGKRGHKGKRRPGDHDDTSDEDSEEEGDDGDDDAEGHCPGVRRAGRVA
GKAWKKKHGVEGRTKDMSDEQKKEIRAVKRQAREAFKAAKKG*
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mRNA from alignment at P-littoralis_Contig11:972911..977559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.180.1 ID=mRNA_P-littoralis_Contig11.180.1|Name=mRNA_P-littoralis_Contig11.180.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4649bp|location=Sequence derived from alignment at P-littoralis_Contig11:972911..977559+ (Pylaiella littoralis U1_48)
ACCCCTTCTTCACACAACCCTCACGTCTGCCCTCTCCCAACCTCTTCACT
TCAAGACCTCTACAACAACAAACCGAAAAGATGCCGGGCCAAGACGAAGA
ACACAAGGCTGGCGCCGGAAAGCAGGGTCACGAAGGAGAGCACGGGAAGG
CTTGCCACGAACATGTGAGTTGTACGGAGGGGTACAGAAAGAGGTAAAAG
CGGATAGACTACAGAGAGGGGACATGATTTTTGCATGATACCCGCCTTTT
GTGTTGGGCGGGTGTACACCTAGGCGGGTTACATCTGAGCAGCGATAACT
TAGGTCAAGGACGTACCTTGAGTGCAGCTCTGTGGCTCCGGCTCCAGGAT
GTTGTTGCTGCTCGAGCCCGCTCTTTCTGATCGGGGCGCAACGCCGATGG
TGAAACATGTGCATTATTGATCGTGCATTATTGATCGACGCATGCCCCAT
GCCTTAGTCACATGTTCTACAGCAGGTTGAAGTTCGGGGGTCACATGTTG
TAGGTTGAAGGTCTGGCGTCTTTTGGCAAATCTGCTGTATCGGCCGCCGT
GTGTGCGTTGGCCTCTGTCTGCAACACCAAACCGAGCTGTTAACCATGCG
CCCCTCCGCCAAGCCAAGCGCATGAGGAGCGCATTTTCACCTGAATTCGC
CCCGTTTGCATTCCATCCGCAAAAACACGAGCGGCTTGTTTGTTTATGCT
GTCCGCCGCCACCTCCCTCCTCTTGAAAGATTTGTATCGAAAAACGTCAA
CTAAATGAAATGGATGCAAATATATACCGGTCGCTCCGATTGTCCATAGC
AGTCTGTAGTAGTTGTTCCCTCGTTGGGTTATGTTGGTAGCAAGTAAAAT
GGCAGGTTCAACTATCTCTCGAGGGCATTCTTTTGCGGCATCACAGCAGT
AGAATGCGATTTAAGTAGTAACGTCAAGACAGACGAAAGGGACTGCTGAA
CTCGCTTGTGTGTGACCTTCCTTCTGTGACCCCGGCTGGTTCACCCACTT
CATACCAAAAGGTGTTGCCGGTGCCCAGACCAAAAGGTGTGGCCGGTGCC
ACGAACACACCCACACATAAATTGTCGCACAAGGTAGGTGAAAAGTTGCA
AGCCCGATACTGCTACTGCTGTATGCCCTCTTTTCTCGGCTCCTCCCTTT
TGGATTATTATTTTATTTTTTTTATGTGCTCAGACATGCTGCTTTTTGAA
CGTAGCGTTGTGTGATCTTTCGGGGTTCCGTTTTGTTTCGCCGGGAGTTT
TCTCGTCATACCTTTTGGTATGGATTGGTCGGATCTTCCTGCCTTGGAGC
CGAATGTTTGTTTCCCAAACATTTTGTACCGCGGCTTGCGGTCACAGAAC
GATTTTTTTCCCTTTGTATTTTATTTTTTCTGTTCTCTTTATTATTATTT
CCGGTGGTATTGGTCTGCGGCTGGCTGTGTCGACGAATGTTACACACAAA
AATAACCACCATGGAATCTGAACGTCGAGAGGACGTAGAGAGCTCGTAGC
TGTATTACGGCATCGTCATTCAGAGTACATATGGCCGACGATAAAATGTA
TCAGGTAAAGGGTATTCACAAATATTTCAATCCATCAATCCCGTCGTGAT
GTTGATGCACATCTCTAAACTACCCATGTACCGTATTGCCACGCACGGCC
GGCGGATTATTTCCATTTTGTGTCAAGAATTAAAAACAAATAAAAACGAC
ACACTCTCCGTGGAAGTATCGCGAGATCCATCATTTACATCACCTTCCAC
AAGGGAACATCAACACGAGCATGAAAACTCCCGAAATTATTTTTCCGTGA
CTGGAACACTCCCACCGCTGTTGGCTGCGGTTGCTTGCACGGTGTGGATA
TACAGGGTCACAAGGGAGGCCGTGGTGAAGGGCCCGGCGGCCGCGGCGGC
AGAGGCGGCGGAAAGGGCTGTGGGCGGGGCGGCAAGCGCGGCCACAAGGG
AAAGAGGCGCCCCGGCGACCATGATGACACCAGCGACGAGGACTCCGAAG
AAGAGGGGGACGACGTAAGTCGTATTTATTTTTTCGTCCACCTGGTTTGA
TCTTCCCTCTTTTTTCTTTCTTCAAAACACATAATTTGTTCGCCTCTTTC
TTCTTCCAAGACGAGGATGAATAGAGTAGTAGGAACGAACGCAAAGAATA
CGTCTACTGTACCTGTTGTGTTGTTCCTATACGCTCAAAAGTCGTCAAAC
TTCAGCAAGAGGCCATATTTTGCCCCTGCCCGCCGCCAAGCAACGAATAC
AAAGAACTTTGCAGCAACCAGTGCTGCTGCTGCTTGCTGCTGCTACTGCT
GCTGTGACCAAACATGCTTTCGTTTCGCCCTGCCGATCAACCAACCATTC
GTCACAATAATGCCAGTTGGACCAGCTCCCCGCCGCCCGTTCCCAATCCT
AACCCCACACCGAATCCCGCCTCCACCCCACCACATTTTCAGGGTGACGA
CGACGCGGAAGGCCACTGCCCGGGCGTCAGGAGGGCCGGTCGCGTGGCCG
GGAAGGCGTGGAAAAAGAAGCACGGTGTCGAGGGCAGGACCAAGGATATG
AGCGACGAGCAGAAGGTAAGGAGTTTCAGTAACAGCTGTACAGTAAACAG
TTGCGAAATAAATAAACGATTATGTCAAGGACTGCACACAACAGGGTGCC
GCCCCATACCGAGGATACGTCTTCTTTCTTGTATAGCGGGTAACTTTACG
TCAAATCTTGACTCGGATCTAAATGAACCTGGTATTACACAGCCTAACTC
CCGTTGGTTGTTAAGTACATTGCTGCCCGTCGGTTTTCAAACCGATACAT
CATTTGGCTCACCCTACATCCTGATTACCAGGTATATGGGGTCAAAAGTT
CGAGGTACGATACATGTGCTTTACTTGCGCTCGACCAACCTTCAAAAGAA
TGGTTGATTTTTCAACCCAGCAGATTGTGATTTTTTGTCTTGACTTAACA
GCACCGCCTCTGGCGTCGCCCCCCCTCCCCCCGAACGCGTCGTGCTTCTT
ACCATGCTGTCCTTGCTTACCGTTGCAGAAAGAAATCCGGGCGGTCAAGA
GGCAGGCCAGGGAGGCCTTCAAGGCGGCCAAGAAGGGCTAGAAAGCCCGG
CCCATGCAGACTGAACCAGCCGCTTGTTCCAAGACTAGTGGAGCTCGTAC
CAGTCGGGATTAAACAAGAAAGCTAGCCGCTAGTCGCTTGCGAAAAAAAA
ATATAAAATAAAGTTTGTTGTAAGTTGGGAAATAGATTCCGACGTTTCAT
TTTCTCTTCAATTGTGTTCGATACATCGTACTGGAGTATTGAAGCTTCGG
AATAACGTGTCGCGTAAGTTGGGAGACAGATTGAGTATTGAAGCTTCGAA
ATAACGTGTCGCGAAGAAAAGAGCCGTTATGTCGACAAACACTTTGGATG
GGTGAAATATCACGTCCTGTTTTTCACAAAACATTTGTGTTGTCTTCCCA
ACAATCGTGTAAAGCATCTTTGTATGTAGCGCACGTGCGTACGTGCACGA
GTTTTCTTCGGAGAATTGGTGTTGACATAGATGCGGGGAAGAAGAGTCTT
TGTTTTGTATTGCACATGTGTAGAAAATCCGTGTGTACAGTGTCATGGTC
GACAAGAAACGGATCTGAGCCTACGGTAGAGGGTTCCGCCTGTGCAAAAG
TTGTGCTGTTGTTGCGGCCGCTGCAGGTGCTGTTGCGCTGCTCAAGGGAG
GCTGGGTACGGGTACCGCTTTGTAGCACGTAAACACTTTTTGCCATTGTG
TTTTTGGGGGGGATAGACTGGGGCGCGATGAGCGAGTAGACACGGGGGCT
AAAGCTCTTACGTGTGGAAAGAGGTGAAGAGTTCGCGTGGGGCGTACAAT
TACAGATTGATGACTAGCAGCGGCTAATTGCATATCGATATGAACAAGTG
GCAACAATATCGTAAGAACTTTCTTGTGTAATTGTGTAACTCGAACAGGA
AATATTAGTCCGATCTTTTTGCTCCAAAGAGATCGATGCTGTGCTGTGCG
AGTGGTGTGCTTTCGTCAACGCAGCAGCGGTACTTAGTCGTGCCCTAGTC
GTGCCAGGACGACGAGTACCAGTCGATTGTGCAAGGAAGTTCCACTACTT
ACATTTTCGCCGCGGACCGCAGAGAGGACAAAGAAGCAAAAACACCCTGA
AAGCTCGCACCCCAAAAGACATCCCCCCCCTGAAAGCCAGGGATTGGGAT
TGTTTTCTTGCGGTAACTGAATTAATGGAATTGGGACTATTCAATGGGGC
GGTAACGCAAAAAGTCCCCATACCGCGGTAAAAGTACCGCGGGAATATTA
TCGAGACACTCCCATTTAAATCCTTCGAAATGATGTGGGGCAAATGCGAA
GGTTTGAAGTATTGAGAGTATTAACACCCATATATTTTTTGAATGGGATT
GATGTTCGTTCACACGTTCACACATCGCAACACGAATCAAACCAACCGTA
CCTCGGGAAAAGTCTTTCGAACAAGACTCGCACGCCCACCACCCGTGCTG
CTGCTACACCCGTGGGTAGGACAGCCCGCTCAGTATTTTCGCGGTTCCAG
CTTTTTTTATTATACAGGGACAAACAACTCTGCTCTTAGAATGACGTGCG
TGTGGTAAACATGTTATACGAGGAAATACGAAGTAATTTCAAGTATGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:972911..977559+

>mRNA_P-littoralis_Contig11.180.1 ID=mRNA_P-littoralis_Contig11.180.1|Name=mRNA_P-littoralis_Contig11.180.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig11:972911..977559+ (Pylaiella littoralis U1_48)
ATGCCGGGCCAAGACGAAGAACACAAGGCTGGCGCCGGAAAGCAGGGTCA
CGAAGGAGAGCACGGGAAGGCTTGCCACGAACATGGTCACAAGGGAGGCC
GTGGTGAAGGGCCCGGCGGCCGCGGCGGCAGAGGCGGCGGAAAGGGCTGT
GGGCGGGGCGGCAAGCGCGGCCACAAGGGAAAGAGGCGCCCCGGCGACCA
TGATGACACCAGCGACGAGGACTCCGAAGAAGAGGGGGACGACGGTGACG
ACGACGCGGAAGGCCACTGCCCGGGCGTCAGGAGGGCCGGTCGCGTGGCC
GGGAAGGCGTGGAAAAAGAAGCACGGTGTCGAGGGCAGGACCAAGGATAT
GAGCGACGAGCAGAAGAAAGAAATCCGGGCGGTCAAGAGGCAGGCCAGGG
AGGCCTTCAAGGCGGCCAAGAAGGGCTAG
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