mRNA_P-littoralis_Contig11.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.84.1
Unique NamemRNA_P-littoralis_Contig11.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.84.1 vs. uniprot
Match: A0A6H5JSB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.010e-16
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:   22 AEGRESDSEGGSD-----------EMVGVRKVVLLHKLFTRSASCFCSACRVRHYDECYINATYPRLVPTLKEGTVEERVVMDTGVDP 252
            A+G   + EGG +           E V V K  + H+++T  +SCFCSACRVR YD+C++ A YP LVP L+   VEE+VVMDTGVDP
Sbjct:  616 ADGEYKEREGGGESSEEEEVVSGVETVSVEKRTVDHEVYTSQSSCFCSACRVRGYDKCFVFAKYPALVPKLQLSVVEEKVVMDTGVDP 703
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BLAST of mRNA_P-littoralis_Contig11.84.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.160e-14
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   61 EMVGVRKVVLLHKLFTRSASCFCSACRVRHYDECYINATYPRLVPTLKEGTVEERVVMDTGVD 249
            E V V K +  H+++T  ASCFCSAC+VR YD+C++ A YP LVP L+   V+E+V+MDTGVD
Sbjct:  854 ETVRVEKRIADHEVYTSPASCFCSACQVRDYDKCFVFAKYPTLVPKLQLSVVQEKVIMDTGVD 916
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSB4_9PHAE2.010e-1648.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI78_9PHAE1.160e-1455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:455740..456027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789428.7905226-CDS-P-littoralis_Contig11:455739..4560271680789428.7905226-CDS-P-littoralis_Contig11:455739..456027Pylaiella littoralis U1_48CDSP-littoralis_Contig11 455740..456027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.84.1prot_P-littoralis_Contig11.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 455740..456027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.84.1

>prot_P-littoralis_Contig11.84.1 ID=prot_P-littoralis_Contig11.84.1|Name=mRNA_P-littoralis_Contig11.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
EDEPREEAEGRESDSEGGSDEMVGVRKVVLLHKLFTRSASCFCSACRVRH
YDECYINATYPRLVPTLKEGTVEERVVMDTGVDPKTVDPDTGLYNG
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mRNA from alignment at P-littoralis_Contig11:455740..456027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.84.1 ID=mRNA_P-littoralis_Contig11.84.1|Name=mRNA_P-littoralis_Contig11.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig11:455740..456027+ (Pylaiella littoralis U1_48)
GAGGACGAGCCTCGAGAGGAAGCAGAGGGGCGCGAGTCTGATTCGGAGGG
CGGGTCCGATGAAATGGTTGGTGTGAGGAAGGTTGTTCTCCTGCACAAAC
TTTTCACCCGTTCAGCATCGTGTTTTTGCTCAGCCTGCCGTGTTCGTCAT
TACGATGAGTGCTACATCAATGCGACGTACCCGCGCCTTGTTCCAACGTT
GAAAGAAGGAACAGTGGAGGAAAGGGTTGTCATGGATACTGGGGTGGATC
CGAAGACCGTTGACCCGGATACGGGGTTGTACAACGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:455740..456027+

>mRNA_P-littoralis_Contig11.84.1 ID=mRNA_P-littoralis_Contig11.84.1|Name=mRNA_P-littoralis_Contig11.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig11:455740..456027+ (Pylaiella littoralis U1_48)
GAGGACGAGCCTCGAGAGGAAGCAGAGGGGCGCGAGTCTGATTCGGAGGG
CGGGTCCGATGAAATGGTTGGTGTGAGGAAGGTTGTTCTCCTGCACAAAC
TTTTCACCCGTTCAGCATCGTGTTTTTGCTCAGCCTGCCGTGTTCGTCAT
TACGATGAGTGCTACATCAATGCGACGTACCCGCGCCTTGTTCCAACGTT
GAAAGAAGGAACAGTGGAGGAAAGGGTTGTCATGGATACTGGGGTGGATC
CGAAGACCGTTGACCCGGATACGGGGTTGTACAACGGC
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