mRNA_P-littoralis_Contig11.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.55.1
Unique NamemRNA_P-littoralis_Contig11.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.55.1 vs. uniprot
Match: A0A6H5L1V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.820e-23
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    4 GFDTAGREGEDDPTVRNFQINKIKRVFFTMTLNATDGSTLISYQSLTWEQSEIVASVMVPDTTEGDLYLAGEQKTWFNGVIYSRTRPTLPPTP 282
            GFDT G  GEDDP  +      ++ VF +M+L+A+DG TL+SYQSL +  S +++SVMVPDTTEGDLY+ G     F G++Y R RPTLPPTP
Sbjct:  168 GFDTDGSAGEDDPDTKP---RLLRFVFVSMSLDASDGETLVSYQSLNYRTSRLLSSVMVPDTTEGDLYMGGHDGDTFFGMVYRRERPTLPPTP 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1V8_9PHAE4.820e-2354.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:355886..356197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789428.4017587-CDS-P-littoralis_Contig11:355885..3561971680789428.4017587-CDS-P-littoralis_Contig11:355885..356197Pylaiella littoralis U1_48CDSP-littoralis_Contig11 355886..356197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.55.1prot_P-littoralis_Contig11.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 355886..356197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.55.1

>prot_P-littoralis_Contig11.55.1 ID=prot_P-littoralis_Contig11.55.1|Name=mRNA_P-littoralis_Contig11.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
KGFDTAGREGEDDPTVRNFQINKIKRVFFTMTLNATDGSTLISYQSLTWE
QSEIVASVMVPDTTEGDLYLAGEQKTWFNGVIYSRTRPTLPPTPTPTMSP
TEPP
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mRNA from alignment at P-littoralis_Contig11:355886..356197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.55.1 ID=mRNA_P-littoralis_Contig11.55.1|Name=mRNA_P-littoralis_Contig11.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig11:355886..356197+ (Pylaiella littoralis U1_48)
AAAGGTTTCGACACGGCCGGACGCGAGGGGGAAGACGATCCCACGGTACG
AAACTTTCAAATCAATAAGATAAAAAGAGTCTTCTTCACCATGACCCTCA
ACGCCACGGACGGAAGCACACTGATATCCTATCAATCATTGACGTGGGAA
CAGTCGGAGATCGTCGCCAGCGTAATGGTGCCCGACACCACTGAGGGCGA
CCTCTACCTAGCTGGAGAACAGAAAACCTGGTTCAACGGGGTAATATACT
CCCGCACGCGGCCGACTCTACCGCCCACCCCCACCCCGACCATGTCTCCT
ACCGAGCCCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:355886..356197+

>mRNA_P-littoralis_Contig11.55.1 ID=mRNA_P-littoralis_Contig11.55.1|Name=mRNA_P-littoralis_Contig11.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig11:355886..356197+ (Pylaiella littoralis U1_48)
AAAGGTTTCGACACGGCCGGACGCGAGGGGGAAGACGATCCCACGGTACG
AAACTTTCAAATCAATAAGATAAAAAGAGTCTTCTTCACCATGACCCTCA
ACGCCACGGACGGAAGCACACTGATATCCTATCAATCATTGACGTGGGAA
CAGTCGGAGATCGTCGCCAGCGTAATGGTGCCCGACACCACTGAGGGCGA
CCTCTACCTAGCTGGAGAACAGAAAACCTGGTTCAACGGGGTAATATACT
CCCGCACGCGGCCGACTCTACCGCCCACCCCCACCCCGACCATGTCTCCT
ACCGAGCCCCCC
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