mRNA_P-littoralis_Contig11.43.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig11.43.3 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE) HSP 1 Score: 699 bits (1803), Expect = 2.520e-229 Identity = 692/1234 (56.08%), Postives = 772/1234 (62.56%), Query Frame = 1
Query: 190 MGTELSKQQ--QGGEDEDEALDARSTTATTLPLP---LVAEKWHDWLQGAESLYIQGRFRAYQKALRKDAPSLPSDPMAAALLKAVARANAAIGRHAEASRVSSGLQGGGXXXXXXXXXGVVRGEGKGVPVGDDGNKNSEARDASLASLEKALRETVDVALQATSSSSXXXXXXXXXXXXXXADAXGXXXXTXXXXXXXXXXXXXXXXXXXXXXXGARQASGLRARPGVAVIAAAAEDVAVQVACAVMATRLAQGEPTKAVSVGLRLLARRQTTVAAAAFVFAEVGAAHVNDETVGPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQDGKCKAARDVFFGVDALRKAFESALSGPAIGGRRLPLQEAAPRLLHLLRLSWLLAVANLALGRAAVAAQFVLVAETAYGTRPSAWRKASFLLATHPPGGASAAYAPRSRCLGLVAASXXXXXXXXXXXXXXXXXXXXXXXXXRDPALSMCRFLRGLALLAQGDLESAAGRLEESLELDPRNRHATVCLAHTYCFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQRQRWKPSDERIRELLRLLSLGASAHFESAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYGGGVETWVLLACVARARGDAGGAVSMFRRVLALDPHCLEAVYGIARVLQESGDHATSRDLLLFLGERSQEISSSIGDDNPTTXXXXXXXRGGSESGSGSSCHGRPSPRERRRSHLCFPLDIDAGGRRPGIREDRSWIGGXXXXXXXXXXAAMLPVATAEVMWRVARASMGAKDWSTAILALRGLAAELLSRATSPFPKKDNAQLFFFASSRKGGDGFSASPGPARARVLRALAFCQIQRGLYRDALETTSEGLGRAAGXXXXXXXXXXXXXXXM----------LMLRADALLCLEEGEAVVEASLDRATQLLNLRQIDMSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPRDLAVDRDRRLARSAAFNNRAVLLVAAGRGEEACRLLRACLLLLPGEPRPVFNLTLALWRLGRRRAACAHWLEARGWLGDVGGXXXXXXXXXXXXXMANTEAFAKLLDSACRRKALLKPDAAVRRNTYGGGQGNPSSSSFPTAGF-------------HVTEGEG-DPLSLPPLQLCLLDIRCLTWWIDNDL 3804
MGTELSKQQ +GG++ P +V +W WLQGAE L++QG+FRA+Q+AL+ D P LP++P+AA+LLKAVA+ANAAIG HAEAS S XXXXXXXXX E AR+AS+A LE ALRE V+VA+QAT SSS A + +A+ LR VA++AAAAEDVAVQ ACA+MA RLAQGE T A P+T XXXXXXXXXXXXXXXXXXXXXXXX AARDVF+GVDALR+AF SAL GP GG+RLPL EAAPRLLHLLR+SWLLAVANLALGRAA A++ V VAE AYG R SAWR+AS LL+T P G ASAAY P L XXXXXXXXXXXX DPAL+MCRFLRGL LAQGDLE+AAGRLEESL+LDPRNRHATVCLAH CFA+ RWKPSDER ELLR+LSLG+SAHF+S EQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VE W+LLAC ARA G+AG AVSMFRR LALDP CLEAVYG+ARVLQESGDHA SR+LLLFLGERSQE+S G P++ G + S SS H + LCFPL+ G +PG XXXXXX +LPVA AEVMWRVARASM A+DW TAILAL GL A + P++ A ++FAS KGG ++ GP RARVLRALA+ QIQRGLYRDALET LG +GXXXXXXXXXXXXXXX LMLRADALLCLEE E SLDRA +LL RQ+D+S+P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAR+AAFNNRAVLL+A GRGEEACRLLRACLLLLP EPRP FN +LALWRLGRRR ACAHWLEAR WLG GG EA+ KLL+SA RRK L+ DA + N GG + HVTEG G DPLSLP +Q+CLLDIRCLTWW+DN+L
Sbjct: 1 MGTELSKQQCREGGDNNGXXXXXXXXXXXXXKAPTTQVVVGEWAGWLQGAEVLFLQGKFRAFQEALQNDVPPLPTEPLAASLLKAVAKANAAIGGHAEASLSLSSTGXXXXXXXXXXXXXXXXXE--------------AAREASIAGLEVALREAVEVAVQATCSSSATSPSSLLPPTPAAAGS---------------------------------EAADLR----VALLAAAAEDVAVQAACALMAARLAQGEGTAA-----------------------------------DPDTPASIASNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AARDVFWGVDALREAFGSALKGPGAGGKRLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRIVCVAEHAYGARRSAWRRASLLLSTRPTG-ASAAYTPXXXXAPL---HPLGAATSKHGGVGXXXXXXXXXXXXNDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPATTSL-------------------------RWKPSDERTHELLRVLSLGSSAHFDSIEQEILLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------VEAWLLLACAARATGNAGEAVSMFRRALALDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELS---GGSLPSSNGATSAVHQGRRNSSRSSSH---------QHRLCFPLEARRQGFQPGGXXXXXXX--XXXXXXASGALTVLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATAGGEASPREGLA--YYFASFAKGGGARASRRGPGRARVLRALAYSQIQRGLYRDALETVGTVLGDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXLMLRADALLCLEEDETCAGDSLDRALRLLARRQVDLSVPPPSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------LARAAAFNNRAVLLIAFGRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWLGVGGG---------------RREAYVKLLESARRRKLSLQSDAVNKANKTGGHGDSXXXXXXXXXXXXXXXXXXXXXVTSHVTEGSGGDPLSLPQIQVCLLDIRCLTWWLDNNL 1071
BLAST of mRNA_P-littoralis_Contig11.43.3 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI) HSP 1 Score: 529 bits (1363), Expect = 3.530e-167 Identity = 444/839 (52.92%), Postives = 510/839 (60.79%), Query Frame = 1
Query: 331 LYIQGRFRAYQKALRKDAPSLPSDPMAAALLKAVARANAAIGRHAEASRVSSGLQGGGXXXXXXXXXGVVRGEGKGVPVGDDGNKNSEARDASLASLEKALRETVDVALQATSSSSXXXXXXXXXXXXXXADAXGXXXXTXXXXXXXXXXXXXXXXXXXXXXXGARQASGLRARPGVAVIAAAAEDVAVQVACAVMATRLAQGEPTKAVSVGLRLLARRQTTVAAAAFVFAEVGAAHVNDETVGPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQDGKCKAARDVFFGVDALRKAFESALSGPAIGGRRLPLQEAAPRLLHLLRLSWLLAVANLALGRAAVAAQFVLVAETAYGTRPSAWRKASFLLATHPPGGASAAYA---PRSRCLGLVAASXXXXXXXXXXXXXXXXXXXXXXXXXRDPALSMCRFLRGLALLAQGDLESAAGRLEESLELDPRNRHATVCLAHTYCFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQRQRWKPSDERIRELLRLLSLGASAHFESAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYGGGVETWVLLACVARARGDAGGAVSMFRRVLALDPHCLEAVYGIARVLQESGDHATSRDLLLFLGERSQEISSSIGDDNPTTXXXXXXXRGGSESGSGSSCHGRPSPRERRRSHLCFPLDIDAGGRRPGIREDRSWIGGXXXXXXXXXXAAMLPVATAEVMWRVARASMGAKDWSTAILALRGLAAELLSRATSPFPKKDNAQL-FFFASSRKGGDGFSASPGPARARVLRALAFCQIQRGLYRDALETTSEGLG 2835
LY+QG+FRA+Q+AL+ D P LP++P+AA+LLKAVA+ANAAIG HAEAS S G G V G G G DG+ + AR+ S A LE ALRE V+VA++AT +SS A +A+GL GVA++AAAAEDVAVQ ACA+MA RLAQGEP KA+SVG+R+LA R+ T++AA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +Q+ K +AARDVF+GVDALR+AF SAL GP GG+RLPL EAAPRLLHLLR+SWLLAVANLALGRAA A++ V VAE AYG R SAWR+AS LL+T P G ASA Y P + L A+ XXXX RDPAL+MCRFLRGL LAQGDLE+AAGRLEESL+LDPRNRHATVCLAH CFA+ W+PSDER ELLR+LSLG+SAHF+S EQ XXXXXXXXXXXXXXXX XXXXXX VE WVLLAC ARA G+AG AVSMFRR LALDP CLEAVYG+ARVLQESGDHA SR+LLLFLGERSQE+S G +P++ G S S SS H + LCFPL+ G +P G +LPVA AEVMWRVARASM AKDW TAILAL GL A + AT+ L ++FAS K G ++ GP RARVLRALAF QIQRGLYRDALET LG
Sbjct: 2 LYLQGKFRAFQEALQNDVPPLPTEPLAASLLKAVAKANAAIGGHAEASLFLSSTGGAGGTGSE------VAG---GRHGGGDGDSEA-AREDSTAGLEAALREAVEVAVKATCASSATSPSSLLPPIPAAAGT---------------------------------EAAGL----GVALLAAAAEDVAVQAACALMAARLAQGEPAKALSVGVRVLASRKATISAAXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKQEEK-EAARDVFWGVDALREAFGSALKGPGAGGKRLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRLVSVAEHAYGARRSAWRRASLLLSTRPTG-ASATYTAPPPPAPLHPLAPATSKQGGGGSANGTLRXXXXG------RDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPATTTTSLG-----------------------WEPSDERTHELLRVLSLGSSAHFDSIEQEILLRGXXXXXXXXXXXXXXXXEAGRCMWRAXXXXXX-------VEAWVLLACAARATGNAGEAVSMFRRALALDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELS---GGSSPSSNGATSAVHQGRRSSSRSSSH---------QHRLCFPLEATRQGFQPSGGGXXXXXGAL----------VVLPVAPAEVMWRVARASMAAKDWPTAILALEGLVA---AEATADGVASSREGLAYYFASFAKDGGARASRRGPGRARVLRALAFSQIQRGLYRDALETVRMVLG 722 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.43.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig11.43.3 >prot_P-littoralis_Contig11.43.3 ID=prot_P-littoralis_Contig11.43.3|Name=mRNA_P-littoralis_Contig11.43.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1268bp TDRQTRKVHRFSASLTACVLLSCVLTFSSHTQSSHYRAETYREVVWLAREback to top mRNA from alignment at P-littoralis_Contig11:277701..295319+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig11.43.3 ID=mRNA_P-littoralis_Contig11.43.3|Name=mRNA_P-littoralis_Contig11.43.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=17619bp|location=Sequence derived from alignment at P-littoralis_Contig11:277701..295319+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig11:277701..295319+ >mRNA_P-littoralis_Contig11.43.3 ID=mRNA_P-littoralis_Contig11.43.3|Name=mRNA_P-littoralis_Contig11.43.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3804bp|location=Sequence derived from alignment at P-littoralis_Contig11:277701..295319+ (Pylaiella littoralis U1_48)back to top |