mRNA_P-littoralis_Contig11.40.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.40.2
Unique NamemRNA_P-littoralis_Contig11.40.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: D7FTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU4_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.910e-66
Identity = 122/172 (70.93%), Postives = 133/172 (77.33%), Query Frame = 2 
Query:  770 TSSVLSARRLWGAGDPLSVGRKRR-PGIVKSTPTASSIPRQRXXXXXXXXXXXXXXXXXXXXKGAGKEQTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEI 1282
            T S   + +LWGAGDPLSVGRKRR PG VKSTPTASS  ++R                     G GKEQTFLDFGQ+SLG+R LCPRC LLYVRG+ADDE RHAALCAKAARG+DFAGWKQERVK  F DDGGRVVE+REGDP+PHLAK+REVERLMDADMGFAPG RDD I
Sbjct:   38 TPSSTPSGKLWGAGDPLSVGRKRRRPGTVKSTPTASSTNKKRSSGGREGGVSLA---------GKGKEQTFLDFGQRSLGERALCPRCNLLYVRGSADDEERHAALCAKAARGIDFAGWKQERVKEAFADDGGRVVEVREGDPAPHLAKLREVERLMDADMGFAPGARDDAI 200
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: A0A6H5L0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.310e-25
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 2 
Query: 1124 KQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEI----LAPLGGXXXXXXXXXXXXXXXXXXXXXXX-----------AVNAFLYIRKRRVLGCVVAERIETARRAVVVMLSPGAK 1483
            ++ERVK  F DDGGRVVE+REGDP+PHLAK+REVERLMDADMGFAPG RDD +     +PL G  XXXXXXXXXXXXXXXXXXXXX            V AFLY+R++RVLGCV+A+RI+TARRAVV +  PG K
Sbjct:    3 RRERVKEAFADDGGRVVEVREGDPAPHLAKLREVERLMDADMGFAPGARDDAVSLGSASPLLGEGXXXXXXXXXXXXXXXXXXXXXXXXVGAAAKTKGVTAFLYVREKRVLGCVIAQRIDTARRAVV-LPEPGPK 136
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: A0A4D9DA82_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA82_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.080e-24
Identity = 63/158 (39.87%), Postives = 83/158 (52.53%), Query Frame = 2 
Query:  971 QTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIRKRRVLGCVVAERIETA 1444
            QT+LD GQ+S G+R LC  C LLYV G  +DE  H   C   A G+   GW+ +R+    +   GRVVE+R GD +  LAK+REV+R+MD +MGF P    D +L                               AFLY+  RRV+GCV+AE+I  A
Sbjct:   54 QTYLDLGQRSHGKRTLCGTCGLLYVNGQEEDEKDHVKFCRSVAAGLVCPGWRDQRLVWGQEGVDGRVVEVRPGDGTAPLAKMREVKRVMDQEMGFVPLREGDMVLKT--------------------------TEKAFLYVHGRRVVGCVIAEKINAA 185
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: D8R8R2_SELML (Uncharacterized protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R8R2_SELML)

HSP 1 Score: 90.5 bits (223), Expect = 4.170e-17
Identity = 54/158 (34.18%), Postives = 72/158 (45.57%), Query Frame = 2 
Query:  971 QTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIRKRRVLGCVVAERIETA 1444
            Q FLDFGQ    Q   C  C L+Y RG  +D   H        RG+ F GW+ ERV A+F+D   RV+ +   DP+ H  KV+EV   M+ +MG  P   D E +                             +  +LY+  +RVLGC VAE I+ A
Sbjct:    1 QYFLDFGQSDFSQSA-CKVCGLVYARGQENDTKVHEIFHRNFLRGIQFKGWRNERVAARFEDRSSRVIVVLPQDPAQHRTKVKEVATTMEKEMGLPP---DCEAV-----------------------------LQVYLYVESKRVLGCAVAEAIDEA 125
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: D8QQ67_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QQ67_SELML)

HSP 1 Score: 89.7 bits (221), Expect = 4.720e-16
Identity = 55/161 (34.16%), Postives = 72/161 (44.72%), Query Frame = 2 
Query:  962 GKEQTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIRKRRVLGCVVAERIETA 1444
            G  Q FLDFGQ    Q   C  C L+Y RG  +D   H        RG+ F GW+ ERV A+F+D   RV+ +   DP+ H  KV+EV   M+ +MG  P    D +L                                +LY+  +RVLGC VAE I+ A
Sbjct:   65 GGGQYFLDFGQSDFSQSA-CKVCGLVYARGQENDTKVHEIFHRNFLRGIQFKGWRNERVAARFEDRSSRVIVVLPQDPAQHHTKVKEVATTMEKEMGLPP----DWLL--------------------------NTQYKVYLYVESKRVLGCAVAEPIDEA 194
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: A0A7S1G1E2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1E2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.550e-14
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 2 
Query:  965 KEQTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEI 1282
            K Q +LDFGQKS G+   C +C +LY+ G  +DE  H  +C     GV F   K  R +  +  +G  +V IR  DP  +  KV+EV  +++ D+GFA    D ++
Sbjct:   83 KTQMYLDFGQKSFGKNTTCEKCGMLYMNGMEEDEATHRKVCQSYLHGVPFRSKKMMRDRTVWSSNGFDIVRIRYDDPVSYRNKVKEVNLVVNRDLGFAENSADKKV 188
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: UPI001E675B20 (N-acetyltransferase ESCO2-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E675B20)

HSP 1 Score: 80.1 bits (196), Expect = 3.460e-12
Identity = 54/173 (31.21%), Postives = 77/173 (44.51%), Query Frame = 2 
Query:  971 QTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFA---PGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIRKRRVLGCVVAERIETARRAVV-VMLSPG 1477
            Q  +D GQK  G    C  C  +Y  G   DE  H          V F+GWK+ER+    D  GGRVV +   DP  +  KV E+  ++DA++GF+   P   +D                                + AFLYI +RR++GC++AERI  A + +   +L PG
Sbjct:  489 QMMIDAGQKKFGAEQ-CSLCGTVYEVGNPVDEASHNLHHDNFVNSVKFSGWKRERLVRDLDHLGGRVVMVSSEDPPHYWRKVEEMCEIVDAELGFSGKKPKSGED--------------------------------IKAFLYILERRIVGCLIAERISNAYKIIPHALLKPG 628
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: A0A443PDM4_9MAGN (Protein CHROMOSOME TRANSMISSION FIDELITY 7 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PDM4_9MAGN)

HSP 1 Score: 78.6 bits (192), Expect = 3.980e-12
Identity = 55/171 (32.16%), Postives = 76/171 (44.44%), Query Frame = 2 
Query:  971 QTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIRKRRVLGCVVAERIETARRAVVVMLSPGAK 1483
            Q  L+ GQ        C  C L Y RG  DDE  H A      RG+ F GW+ ERV      +G R++ + +GDP  H  KV EV ++M+ ++  +     DE L                            +   FL+I K+R++GC+VAE I TA R V    SP A+
Sbjct:  104 QYHLELGQSDFLLHT-CSICGLKYSRGDEDDEKVHKAFHMNYYRGIQFKGWRNERVVPTSSGNGDRIILVLDGDPPAHRHKVAEVVKIMEWELSLS-----DEWLL-----------------------HNSSSCKVFLFISKQRIIGCLVAEPIRTAYRVVS---SPAAR 242
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: UPI0004D07EFC (N-acetyltransferase ESCO2 n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D07EFC)

HSP 1 Score: 76.3 bits (186), Expect = 2.970e-11
Identity = 49/165 (29.70%), Postives = 82/165 (49.70%), Query Frame = 2 
Query:  965 KEQTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIR-KRRVLGCVVAERIETARRAV 1456
            K+Q  ++ GQK  G  ++C  C ++Y   + +DE RH     +   G+ +AGWK+ERV A+F D  G++V +   DPS  + KV +V+ L+D ++GF    +   +  P                              FL+I  ++RV+GC++AE I+ A R +
Sbjct:  184 KDQLIINAGQKHFGA-IVCRSCGMIYTASSPEDEMRHVQYHHRFVEGIKYAGWKKERVVAEFWD--GKIVLVLPRDPSYAIRKVEDVQELVDNELGF----QQVVLRCP-------------------------NKTKTFLFISDEKRVVGCLIAEPIKQAFRVL 316
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BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Match: A0A0L0G7I9_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G7I9_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 4.990e-11
Identity = 53/169 (31.36%), Postives = 78/169 (46.15%), Query Frame = 2 
Query:  965 KEQTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRHAALCAKAARGVDFAGWKQERVKAQF----DDDGGRVVEIREGDPSPHLAKVREVERLMDADMGFAPGGRDDEILAPLGGXXXXXXXXXXXXXXXXXXXXXXXAVNAFLYIRKRRVLGCVVAERIETARRAVV 1459
            K Q  +D GQ SLG  ++C  C + Y  G ++D   H     K  + V FAGWK ER  A+     DD  GR++ I + D   HL K ++V+  +D  +G     + D +L+                           +   +L I  R+V+GCVVAE++  A RAVV
Sbjct:  244 KVQMVIDLGQTSLGV-LVCKDCGMTYNGGDSEDVAEHQRFHTKYFKDVTFAGWKNERRVAESLILPDDVIGRIICIHQSDQPTHLKKAQQVQAFVDLKLGLV---QMDTVLSQ--------------------------SAKTYLCIANRKVIGCVVAEKLAHAYRAVV 382
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.40.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTU4_ECTSI2.910e-6670.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0Y1_9PHAE1.310e-2567.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DA82_9STRA2.080e-2439.87Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
D8R8R2_SELML4.170e-1734.18Uncharacterized protein (Fragment) n=1 Tax=Selagin... [more]
D8QQ67_SELML4.720e-1634.16Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A7S1G1E2_9STRA1.550e-1436.79Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
UPI001E675B203.460e-1231.21N-acetyltransferase ESCO2-like isoform X1 n=2 Tax=... [more]
A0A443PDM4_9MAGN3.980e-1232.16Protein CHROMOSOME TRANSMISSION FIDELITY 7 n=1 Tax... [more]
UPI0004D07EFC2.970e-1129.70N-acetyltransferase ESCO2 n=1 Tax=Galeopterus vari... [more]
A0A0L0G7I9_9EUKA4.990e-1131.36Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:274025..277505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTU4
Preferred nameESCO1
PFAMsAcetyltransf_13,zf-C2H2_3
Model size1484
Max annot lvl2759|Eukaryota
KEGG koko:K06674,ko:K11268
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000803,GO:0000819,GO:0001741,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0004468,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005794,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007088,GO:0007135,GO:0007275,GO:0007346,GO:0007389,GO:0007507,GO:0008080,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009553,GO:0009611,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009893,GO:0009908,GO:0009956,GO:0009987,GO:0010154,GO:0010369,GO:0010556,GO:0010564,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022622,GO:0030054,GO:0030097,GO:0030154,GO:0030162,GO:0030261,GO:0031099,GO:0031101,GO:0031323,GO:0031325,GO:0031326,GO:0031618,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034087,GO:0034089,GO:0034212,GO:0034421,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0040007,GO:0042060,GO:0042246,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043543,GO:0043596,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045144,GO:0045862,GO:0046483,GO:0046872,GO:0046914,GO:0048229,GO:0048285,GO:0048316,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048589,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051171,GO:0051173,GO:0051177,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0052547,GO:0052548,GO:0060255,GO:0060771,GO:0060772,GO:0061458,GO:0061733,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0070192,GO:0070727,GO:0071103,GO:0071168,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080186,GO:0090304,GO:0090567,GO:0090734,GO:0098687,GO:0098813,GO:0099402,GO:0140013,GO:0140014,GO:1901360,GO:1901564,GO:1901576,GO:1903046,GO:1903047,GO:1990523,GO:2000112,GO:2000116,GO:2001056
Exons4
Evalue2.09e-68
EggNOG OGsKOG3014@1|root,KOG3014@2759|Eukaryota
Ec32 ortholog descriptionN-acetyltransferase ESCO, acetyl-transferase domain
Ec32 orthologEc-25_001550.1
Descriptionsister chromatid cohesion
Cds size1158
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789427.8444314-CDS-P-littoralis_Contig11:274024..2743781680789427.8444314-CDS-P-littoralis_Contig11:274024..274378Pylaiella littoralis U1_48CDSP-littoralis_Contig11 274025..274378 -
1680789427.8566408-CDS-P-littoralis_Contig11:274837..2749541680789427.8566408-CDS-P-littoralis_Contig11:274837..274954Pylaiella littoralis U1_48CDSP-littoralis_Contig11 274838..274954 -
1680789427.865405-CDS-P-littoralis_Contig11:275476..2756511680789427.865405-CDS-P-littoralis_Contig11:275476..275651Pylaiella littoralis U1_48CDSP-littoralis_Contig11 275477..275651 -
1680789427.8760734-CDS-P-littoralis_Contig11:276668..2771801680789427.8760734-CDS-P-littoralis_Contig11:276668..277180Pylaiella littoralis U1_48CDSP-littoralis_Contig11 276669..277180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789427.8851388-UTR-P-littoralis_Contig11:277180..2775051680789427.8851388-UTR-P-littoralis_Contig11:277180..277505Pylaiella littoralis U1_48UTRP-littoralis_Contig11 277181..277505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.40.2prot_P-littoralis_Contig11.40.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 274025..277180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.40.2

>prot_P-littoralis_Contig11.40.2 ID=prot_P-littoralis_Contig11.40.2|Name=mRNA_P-littoralis_Contig11.40.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=386bp
MKTYSRRNSRPISRGGGEGAAGSSSSSGGGGRCSISTPATMTAAAARTTR
PEEGAVLPQLKSRSSPSPSRSTAPAGAAGAAGAASVGRKRRRLSLAGVPV
CSLGKTPPRPTFSLAAAHSAPGALGLERKLDSGGGGGGVWGINGEGSDTS
SVLSARRLWGAGDPLSVGRKRRPGIVKSTPTASSIPRQRRRQEQQQQQQQ
QQQQQRQQKKGAGKEQTFLDFGQKSLGQRVLCPRCKLLYVRGAADDEGRH
AALCAKAARGVDFAGWKQERVKAQFDDDGGRVVEIREGDPSPHLAKVREV
ERLMDADMGFAPGGRDDEILAPLGGSGGGGGGGGGGGGGGVLSNKKKKAV
NAFLYIRKRRVLGCVVAERIETARRAVVVMLSPGAK
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mRNA from alignment at P-littoralis_Contig11:274025..277505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.40.2 ID=mRNA_P-littoralis_Contig11.40.2|Name=mRNA_P-littoralis_Contig11.40.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3481bp|location=Sequence derived from alignment at P-littoralis_Contig11:274025..277505- (Pylaiella littoralis U1_48)
GCGGCAGCGACACAACATCTGCCGGCAACAAGCCACACGATTGCTGGCGA
TCATCCATCTCTCCCTCCTCTTCTATTCTAGCTGCGTGCACCGTGCTGTA
CCAGCGTTGCATTTACCAGCGCACGTATTGTGTGGAAAGGAGGTGAATCT
CCACTTCAGTGGACGATCCGTGTTTGAATTTTGAAAATCCCGGACCGTAT
CACGAGTGACTAGTACATATCATAGCATTCTTAGATAGGACCCCAACCAC
CTTGCAGCAACATCGTCGACAGATATCGAATGGCAAAGGGGGCCACACAG
CACCACAACCTTGTGTTTGTTGATCATGAAGACCTACTCTAGGCGCAACA
GCAGGCCCATCTCACGCGGTGGCGGGGAGGGCGCCGCCGGCAGTAGCAGC
AGCAGCGGTGGCGGCGGCAGGTGCAGCATATCGACACCAGCGACGATGAC
AGCAGCAGCAGCAAGAACCACCAGACCAGAGGAGGGCGCCGTCCTCCCTC
AGCTAAAGTCACGGTCTTCGCCGTCACCATCACGATCAACGGCCCCTGCT
GGTGCTGCTGGCGCTGCGGGCGCTGCTAGTGTTGGAAGGAAGCGAAGGCG
ACTGTCCCTCGCTGGCGTTCCCGTCTGTTCCCTGGGGAAGACACCCCCCC
GGCCGACGTTCTCCTTGGCAGCAGCCCATTCTGCCCCGGGGGCTTTAGGT
TTAGAGAGAAAGCTGGACAGCGGCGGCGGCGGCGGCGGCGTTTGGGGAAT
CAATGGGGAAGGAAGCGATACCTCTTCGGTCCTCAGCGCGCGCAGGCTAT
GGGGAGCCGGCGACCCACTTAGTGTCGGCCGGAAGCGGTAAGAAGGGATT
TTGTTTGACCATTCTACAGAGGGTGCATCTCTTGCTCTCGAGAAAGCCAA
CATACAAATGCTTTATGTTTGCTGCATGGGTCGGCACGAGCAGGTCGATC
TCTAGAAGAGCAGTCTCGCGTGTTCGGAGAGGCTACAAGTATTGGAGACT
CGTTAATTTCTTTGTGCAGGGGAAGCGACCGTGAGCGAGCGCGATCGACA
CACGCAGCACACAGCAGTGTGATTATTGCAGTGTGGGGTTTCTGTGATGC
GGGCACCCCGCCGCGGTTAGCAACCACGATCAGCCCGATTCTCCGATCAA
AGCATGAGCACATCATACCATACGTGCACCATACCAGGCATGCGCCGAAA
CAGCCGCATCATAAGTCGCCCCACAATCAACACGAAAGCCGGTGTGTTTG
GCATACTAAACGTCTGCAGCAGCAGCAGCAGCAGTCAGCCGCAATCAAAA
CAAGTTCCCGTGTGTTGCGGGACATTTACAGTATAAGTCTTCAGCAGCAG
CAGCACCAGCTCCTAGCAGCAGCACCGGTAGCAGCAGCACTAAGTGTCCA
CATTTGGTGCACGCTACCCCTCACGACTCACTTGCAACGCACCTGTGAGA
TAAGCGCCAGTGGTGGCGAGTTCTCGCACAGAATCCTCCGGAAAATGAAC
GACTGCTCTGCACTGCCTCATATATACGTACGGCAGCGATCGAAATCATT
TCAACTTGACGCACGCTGGGCTTGCGGCTTTTGGCCGGCCATTTACTCAA
AACCGCGGCGCGTTACCCACATTAAAGAACATCCGCTGCTGCACTGCTGC
GAAAGTCATACCAGGTGCCCCCCGCAACCCCTCTCGCGGGATCCTCTCTT
TCGCAGGAAGGGATCGAATGTGCCCGTATCTCGCAGAATCCCGCACTATT
TTTGTTTTAATGAATACCCGAGGAACGCCTGTTTTCGAGGATTCCAACCT
CATGCCCCCCCCCTCTCTCTCTCTCTCTCTCTTCGCGCGGTTTTATTTGT
GCAGGAGGCCGGGGATAGTCAAGAGCACCCCGACTGCTTCTTCGATCCCC
AGACAGCGACGGCGGCAGGAGCAGCAGCAGCAGCAGCAACAGCAACAGCA
ACAACAACGGCAGCAGAAGAAAGGAGCGGGAAAGGAACAGACGTTTCTCG
ACTTCGGACAGAAGAGCCTCGGCCAACGGGCAAGTTTTTCTGTCGTTCGT
TTCCGGTCTGTGCTTTGGCAGGCAAGATGCCGAACACGTGTCTGTGCGTG
CGTGAGAGCGAGACAACAGAGAGAGTCAAAGAGAGAGCCATGGCGGTGCT
TCTGGCCGAAGGCAGTCCGCAAGGTTCTCTGCTCGCTTCCTCCCTGTTTC
GGCTCGGTTGTGCGTTTCTTTATCCCTTCCATGTCTCCCTCCACCCCACC
GTTCTCCATCTTTGTCCGTTCGTCTCTCTCGTCCTCTGCCTCCCTGGGCA
TGTGCGCATGTCTTTCTCTCTATGAGTCTACTCTGTTTCTCTGTCCACCT
TTCTTCCCGTATCTTTGCCCGCCCGCCCCCCCCCATCCTCTCTGTGTACC
TTTTTTCCGTCGCGCACTGAAAATCGAACCCTCCAAACCTCCTCCCCCAT
CCCGTCGCTCCCCGACCCCCTGCTCTATTATTTTCCGTCTCGTGTTTCTC
CGCGCGCGTTTACCGTGCGTTCGTTCCCTCCTTGTTTTTCGTTATCACCA
GGTCTTGTGCCCTCGTTGCAAGCTGTTGTACGTGCGCGGCGCAGCCGACG
ATGAAGGTCGGCACGCGGCTCTTTGTGCGAAGGCAGCCAGGGGCGTAGAT
TTCGCGGGTTGGAAACAGGTGCGGGCGACGTTGCTATTGGTGTTGGTGTT
GGTCTTGGTGTTGGTGTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGATGAGAGTGGTGATCGTGGTGGTGGTG
TTGATGGTGATGGTGGTGATGGTGGTGGCGGCGGTGGTGGTGGTGGTGGT
GGTGATGGTGATGGTGGTGGCTATTGCTGTTGCTTGTATGAAATGTTAGT
TGTTTTAGTGTTGTAAAATGCCATTCCGCCAAGGGTAACCTCTCCTCTCC
GGCACACTTCGCCCCCTCACCGACGGTCTGACCGCGCCGACTTTTTCTTT
CTTCGGCCGTGGCCAGGAAAATAACACGCAAGCACTCCTTTCGCCCTTGG
CACCGGACGAAAAATACTCGTAAAGCTAACGTGCAAACCTTCGCCTCCTT
TTGTCCCGAACCTTGACCATATTCTAGGAGAGAGTGAAAGCGCAATTCGA
TGACGACGGGGGAAGGGTGGTGGAGATACGCGAGGGAGACCCGTCGCCGC
ACCTCGCGAAGGTACGGGAGGTGGAGCGTTTGATGGACGCGGACATGGGT
TTCGCGCCGGGGGGCAGAGACGACGAGATTTTGGCTCCCCTTGGCGGCAG
CGGCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGTGTTGT
CGAACAAGAAGAAGAAGGCCGTGAATGCCTTCTTGTACATACGAAAGAGG
CGGGTGTTGGGCTGCGTCGTCGCCGAGCGAATCGAAACCGCCCGCCGGGC
AGTGGTGGTGATGTTATCGCCAGGTGCGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:274025..277505-

>mRNA_P-littoralis_Contig11.40.2 ID=mRNA_P-littoralis_Contig11.40.2|Name=mRNA_P-littoralis_Contig11.40.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1158bp|location=Sequence derived from alignment at P-littoralis_Contig11:274025..277505- (Pylaiella littoralis U1_48)
ATGAAGACCTACTCTAGGCGCAACAGCAGGCCCATCTCACGCGGTGGCGG
GGAGGGCGCCGCCGGCAGTAGCAGCAGCAGCGGTGGCGGCGGCAGGTGCA
GCATATCGACACCAGCGACGATGACAGCAGCAGCAGCAAGAACCACCAGA
CCAGAGGAGGGCGCCGTCCTCCCTCAGCTAAAGTCACGGTCTTCGCCGTC
ACCATCACGATCAACGGCCCCTGCTGGTGCTGCTGGCGCTGCGGGCGCTG
CTAGTGTTGGAAGGAAGCGAAGGCGACTGTCCCTCGCTGGCGTTCCCGTC
TGTTCCCTGGGGAAGACACCCCCCCGGCCGACGTTCTCCTTGGCAGCAGC
CCATTCTGCCCCGGGGGCTTTAGGTTTAGAGAGAAAGCTGGACAGCGGCG
GCGGCGGCGGCGGCGTTTGGGGAATCAATGGGGAAGGAAGCGATACCTCT
TCGGTCCTCAGCGCGCGCAGGCTATGGGGAGCCGGCGACCCACTTAGTGT
CGGCCGGAAGCGGAGGCCGGGGATAGTCAAGAGCACCCCGACTGCTTCTT
CGATCCCCAGACAGCGACGGCGGCAGGAGCAGCAGCAGCAGCAGCAACAG
CAACAGCAACAACAACGGCAGCAGAAGAAAGGAGCGGGAAAGGAACAGAC
GTTTCTCGACTTCGGACAGAAGAGCCTCGGCCAACGGGTCTTGTGCCCTC
GTTGCAAGCTGTTGTACGTGCGCGGCGCAGCCGACGATGAAGGTCGGCAC
GCGGCTCTTTGTGCGAAGGCAGCCAGGGGCGTAGATTTCGCGGGTTGGAA
ACAGGAGAGAGTGAAAGCGCAATTCGATGACGACGGGGGAAGGGTGGTGG
AGATACGCGAGGGAGACCCGTCGCCGCACCTCGCGAAGGTACGGGAGGTG
GAGCGTTTGATGGACGCGGACATGGGTTTCGCGCCGGGGGGCAGAGACGA
CGAGATTTTGGCTCCCCTTGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCG
GCGGAGGAGGAGGAGGAGGAGTGTTGTCGAACAAGAAGAAGAAGGCCGTG
AATGCCTTCTTGTACATACGAAAGAGGCGGGTGTTGGGCTGCGTCGTCGC
CGAGCGAATCGAAACCGCCCGCCGGGCAGTGGTGGTGATGTTATCGCCAG
GTGCGAAG
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