mRNA_P-littoralis_Contig11.198.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.198.1
Unique NamemRNA_P-littoralis_Contig11.198.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:1017980..1020130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789424.6480882-CDS-P-littoralis_Contig11:1017981..10180711680789424.6480882-CDS-P-littoralis_Contig11:1017981..1018071Pylaiella littoralis U1_48CDSP-littoralis_Contig11 1017982..1018071 -
1680789424.662905-CDS-P-littoralis_Contig11:1019893..10201301680789424.662905-CDS-P-littoralis_Contig11:1019893..1020130Pylaiella littoralis U1_48CDSP-littoralis_Contig11 1019894..1020130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.198.1prot_P-littoralis_Contig11.198.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 1017982..1020130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.198.1

>prot_P-littoralis_Contig11.198.1 ID=prot_P-littoralis_Contig11.198.1|Name=mRNA_P-littoralis_Contig11.198.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
RCNDGCTPVEVGSIPQPDGAAVKTEVAVSSKAGTRKALPVEPVAGERATP
VEDGALAHPESAVKTEVKIAFPSKKRLLGGTYIAAGARQTAEVARFYPSK
VMDTAADAF
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mRNA from alignment at P-littoralis_Contig11:1017980..1020130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.198.1 ID=mRNA_P-littoralis_Contig11.198.1|Name=mRNA_P-littoralis_Contig11.198.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2151bp|location=Sequence derived from alignment at P-littoralis_Contig11:1017980..1020130- (Pylaiella littoralis U1_48)
CGATGTAATGATGGCTGTACTCCAGTTGAAGTAGGTTCCATACCGCAGCC
AGACGGCGCAGCAGTCAAGACAGAAGTGGCGGTATCTTCGAAGGCGGGTA
CGAGGAAAGCTTTGCCGGTTGAACCAGTTGCAGGAGAACGGGCCACCCCC
GTGGAAGATGGCGCGCTTGCTCATCCAGAGTCTGCAGTGAAGACGGAAGT
GAAGATCGCATTCCCATCGAAAAAGCGGCTGCTGGGGGTGAGTTTCAGGG
TCTAGGGACTAAAGCGGTAAACAATTCCTTGCTGAAAGATCCTCATGTTT
GGTCTGAAATATCATGTTCATTCTTTAATCAAATCAAAAGAGCTTTTTTT
GAGATGGCTCAAACATGGGCTGTTGTCCGCGGGAGTCCCGAAAACCTCGA
ACCAATCAGGAAAGTCATGTAGTAGCTACGTGTGCGTGGGCGCATTCAGA
TCTGCTGCCGGGGCGTCGATATCGAAGTTCGCAGCAGTGGCACAAAACCT
CCGCATGATCCCTGAAAAACTCCGCAGTCCGGACTAATACCAAACATTTG
ACGCAGCTGTTCCCGCCCCCATTGGCACCAATCTTCTGAACTGCTGTTCG
TCCGAGGTAACTAGTGGCATGAGCTACTGCTGTTGGCCCTTAGTTCAGGT
TGGGGTATATGGCGGCGAGTACAGCAGTGGGAGATAGCACAGCAGTGGAA
TATGTTATTTGGAATCTGTCCAGTGTGAGGAGTTTTTGATCCTCTGCTGG
AAACTTATATATTTAAGCTCCAGCAGCAGATCTGAATGGTATGAGGTTTT
CGGGACTCCCGCGGACAACAGCCTATGTTTGAGCCACATCGAAATAAGCT
CTTTTGACTTGGTTTAAGAGGGGTTACACATTTACATCTTGATAAAAATG
TGGGAGATTCGAGGTAGACAAGTGACATGCATGCAAAGAGAACTCCCCGC
CGCCGCTGTGTGCGCTTACCAACAGCTTTCCTGTTTTCCGACACCGTCCT
ACTGGCGTGAGGTATCATACCCAGTGTGTGATTGTCAGGGCCTGTTCGCC
GTTTTTCAAAATCCGTGCCTCACAACGATCTGTTGTCCCTGGATCCTTAA
CATCAGTTGCTGCTGTGTATCAGCCGAATCCAACGTGTCACCCCTGTGTT
TCATTAACCTCGCGTCATCAGTGTTATTGCGTCCATGTTGGGTAGAGTGG
GGGCGGTTTGTTGCTTTTTTTCATGTTTTTTCCACTTGGTTTACCTGTAG
CTTTCGAAGCCCTTCGGGTACATAGATCGCGCTTTATTGCCGTAGTGACC
CCCTCGATGACCGATGACCTCCGACACCTAGGTGGTGAGTTCGAATCGCG
GCCGGGGGTTTTCTCGCATAAATCCTCTCAATGGAAAGATTGCATTTCCT
GACTGTCGACGCGGTAGAGGGACAGCCGAACCCTTCTCGCGATATAATTT
AAGGCAAGCACTGCAGAAGAAAGGTTCGAGAACAATAAAACTCCTGTGTG
GACCTGCCTCCTTTGTAACACGATCTGGTGCGCCCACACGCAGAAACAAA
CAATCACACAAACATACCAGTAGGCCCGGTAGCTTTGTGTGCACAACGAA
TGTGTGTACTACCATATTGATTAAGCTTGTAGAATACGGACATGCGTGTG
TTACTTAGATTACCCTGAATCGATATTTCGAATCTCGTACTATTTGACCG
TTTTGCGCGGCTTTTGTTGCTTCCTCGCAGCTTTCTCACGAACCTTTATC
CTTGTCGGGTTGCCCAATTTGTTTACATATTTCTTAGTATTTTTTTTGTC
ATGAGGCACATCTCATGCACCATTCCCAGGGCTGCTCGTAGGATCCGGTG
GCTTGCGGTTTTGATGCTGCATAAACATTCCGCAGTCGGCACCAAACATG
CTACTGGTTTCCACCACAAGTTACAGCATCCACGAGTGTGACGAAATCGA
ACGCAGTTCAGTACATGACCGGCATTCCACAGCCGTATCTGTCGGCCTTC
GCCAGTACTTGAAGCTCCTGCCAATTGTTCTCAATCTTTCCCTGCATTGC
TTGAAACAGGGCACCTACATAGCAGCGGGGGCAAGGCAAACCGCGGAGGT
AGCACGGTTTTACCCCTCGAAGGTGATGGACACCGCTGCGGACGCCTTCA
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:1017980..1020130-

>mRNA_P-littoralis_Contig11.198.1 ID=mRNA_P-littoralis_Contig11.198.1|Name=mRNA_P-littoralis_Contig11.198.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig11:1017980..1020130- (Pylaiella littoralis U1_48)
CGATGTAATGATGGCTGTACTCCAGTTGAAGTAGGTTCCATACCGCAGCC
AGACGGCGCAGCAGTCAAGACAGAAGTGGCGGTATCTTCGAAGGCGGGTA
CGAGGAAAGCTTTGCCGGTTGAACCAGTTGCAGGAGAACGGGCCACCCCC
GTGGAAGATGGCGCGCTTGCTCATCCAGAGTCTGCAGTGAAGACGGAAGT
GAAGATCGCATTCCCATCGAAAAAGCGGCTGCTGGGGGGCACCTACATAG
CAGCGGGGGCAAGGCAAACCGCGGAGGTAGCACGGTTTTACCCCTCGAAG
GTGATGGACACCGCTGCGGACGCCTTC
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