mRNA_P-littoralis_Contig11.99.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.99.1
Unique NamemRNA_P-littoralis_Contig11.99.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:610541..612705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size344
Hectar predicted targeting categoryother localisation
Exons3
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789424.520213-CDS-P-littoralis_Contig11:610540..6105661680789424.520213-CDS-P-littoralis_Contig11:610540..610566Pylaiella littoralis U1_48CDSP-littoralis_Contig11 610541..610566 -
1680789424.5340247-CDS-P-littoralis_Contig11:611744..6117631680789424.5340247-CDS-P-littoralis_Contig11:611744..611763Pylaiella littoralis U1_48CDSP-littoralis_Contig11 611745..611763 -
1680789424.5489838-CDS-P-littoralis_Contig11:612408..6127051680789424.5489838-CDS-P-littoralis_Contig11:612408..612705Pylaiella littoralis U1_48CDSP-littoralis_Contig11 612409..612705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.99.1prot_P-littoralis_Contig11.99.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 610541..612705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.99.1

>prot_P-littoralis_Contig11.99.1 ID=prot_P-littoralis_Contig11.99.1|Name=mRNA_P-littoralis_Contig11.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
TTVAVGPPRTFYHTYNQDSTRRCFLHCTTKKRTAMTGRILLAMASLLAVA
TAWPSGIRGRSSSALPPSCLQTKNVVLSSSCDDQQQQKTTHFAFTMEEKG
SARKSGRCFSAGES
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mRNA from alignment at P-littoralis_Contig11:610541..612705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.99.1 ID=mRNA_P-littoralis_Contig11.99.1|Name=mRNA_P-littoralis_Contig11.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2165bp|location=Sequence derived from alignment at P-littoralis_Contig11:610541..612705- (Pylaiella littoralis U1_48)
ACGACCGTAGCTGTGGGCCCACCACGAACGTTCTACCACACATACAACCA
AGACTCGACCCGCCGGTGTTTTCTACACTGTACGACAAAGAAGAGGACAG
CGATGACGGGGAGAATCCTCCTAGCGATGGCTTCGCTCCTGGCGGTGGCC
ACGGCCTGGCCATCTGGTATCCGAGGACGGTCGTCGTCGGCGCTGCCGCC
GTCGTGCCTTCAGACGAAGAATGTCGTGTTATCGTCCTCGTGTGACGACC
AGCAGCAGCAGAAGACGACGCACTTCGCGTTCACCATGGAGGAAAAGGTA
CCGACGACAACAACACCAGCAGCGGCAGGGCTTTTGTTACGCTGCACCGT
TTGACTGTACATACATAAGGGCGGCGCTTGCTCGCTCTCTGCGTGTTGTG
CTTTATTTAGATCCGTTATCGATATCTTTGTTCTCGTAGACAGCTACGAG
TACTCCTGCAAGGGCCGGTCACGAAGTAAAGCGAGAACGAGAGATACGTC
ATGCCTGTGCACGTATGACACGCCTGCTCCGCCTGCCATCTACCGCACGC
ACAAGCTGAGTGAGAGATACGCGTTTATTGGTCCCTTTCGTCGCTCCTTT
TGAGAACGTGCCCCACTCGCTCTGCACTGCTGTATCCACTGCCTGCGACG
TGTGGTCGGACCTACACGTGATAGATACGTATGGCATCGTAGATGTGCAC
ATGTCAGGCATGTATCCTACGACACGACAAGTATGTATGCCGTCGTGTGC
CGTGCATCGTCGTCCACCTCTCTCTATCGTATCTTTGGCAACCCTGACAG
ACCGTCCGACTGAAGATTGTCTTGTCTTGACTTGCCTTGTCTTGCCATGC
CGCCGCCGCCACGCGATGCGCCACGCGATGCTCCGCGCGCCACGGGCGGC
CTACTTATTTGTACTTGGAACGATCCAACGACGTCACGCCAGGGCTCCGC
TCGTAAATCAGGTGGGAGAGAAAACAAAGAACATGTACAAGAGAGAAGGG
GCGTGTTTATCCACATGTGTGCGACGACAGTGCCAACGAAAGTTCTCGGC
ATGGCTCCGCACGACGGGGGTTATTGATGATGACGAGAGGCAATATCGTG
GAATTCCCGAAATTGCTGCACAGATACGTATTGTAAATCTACAAGAAGAC
CGATACGCCGTATCATACGGTAAAAATGCTGCGTTAGATCAATGGATTTA
CTGCTCTACAATAGAGTGAACCGCTGATCGTTGGGATGTTCATCCCTATT
CAAAATATGATGACAGTACCGCGTAGAATACGTCGGTTGCGCACGACATT
GCTGCTGTAAGCAGGAGTTGTACATACAGCTATCTGCGCGAACAACAGTC
ATCAGCCCTCCCTCGAATGAAGATGATTGAACACCGAAGTCTACAGTAGC
AAAAGCTATCCGTCGATCTTTGTTCTCCTTGGTTCGGGGTATTCATCGAC
GAACGTACCTGGTATGATAGATCAAACCCATAACTCCGACAGGCCGACTG
AATCGCGCAGCAGTTGACACTGTGTACAGTACGGTTGTGTCAGACTTGCT
TCGTACATTCTAAAGTCAATTTTCCTGTCATCATCCCAAGGCATCGAAAG
TCCAGAGGAAGCGAACAATACTGCTTGCTGTGAGCTCCATCGTCTGTGGT
GCGTTTGACTGGTTTGCGCCGCCCGCCGACAGGGACAAAACGTTTAGAGC
TGCGGATGCCACAAGGGCGGTCAAAAATCCCGTCATTCGCCTTATTTTAT
CGCGTGGACGAAATAACCCTGTACGCGGCGGTTACCGTGCGTGGTAAAGT
GCCCTCTTTACCTCTGCAGAAAAACACCGTTTTTTTCACTGCGACAAAAA
ACAAACAAGCAAACAAACAAGCAAACAAGAATACATACATATTACGGCGT
TCCCTCCACACGCCCTCCCCGCCGTGCGACGACCCCCCCCATAAATACCG
GGGCGCTAAATGATCTCGCGGGACATGGACCTACCGTCACTGCGTGGTTC
AACACGAGGAGGATCTCTCTCACCCTTGTTTTTTCCGCAAACCAAAAAAT
GGAAATGAGCCCCCCTCCTCCCCCTCCCACGCGCGCGCGGATCGCGTTCT
CTTTCTTGCGCTTCAATCTCATGACGACGTCTTCTGTAGGCCGTTGCTTT
TCCGCGGGCGAGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:610541..612705-

>mRNA_P-littoralis_Contig11.99.1 ID=mRNA_P-littoralis_Contig11.99.1|Name=mRNA_P-littoralis_Contig11.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig11:610541..612705- (Pylaiella littoralis U1_48)
ACGACCGTAGCTGTGGGCCCACCACGAACGTTCTACCACACATACAACCA
AGACTCGACCCGCCGGTGTTTTCTACACTGTACGACAAAGAAGAGGACAG
CGATGACGGGGAGAATCCTCCTAGCGATGGCTTCGCTCCTGGCGGTGGCC
ACGGCCTGGCCATCTGGTATCCGAGGACGGTCGTCGTCGGCGCTGCCGCC
GTCGTGCCTTCAGACGAAGAATGTCGTGTTATCGTCCTCGTGTGACGACC
AGCAGCAGCAGAAGACGACGCACTTCGCGTTCACCATGGAGGAAAAGGGC
TCCGCTCGTAAATCAGGCCGTTGCTTTTCCGCGGGCGAGTCC
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