mRNA_P-littoralis_Contig11.53.6 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.53.6
Unique NamemRNA_P-littoralis_Contig11.53.6
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.53.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:337195..341766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size703
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.53.6prot_P-littoralis_Contig11.53.6Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 337426..341765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789424.4034889-UTR-P-littoralis_Contig11:337194..3374251680789424.4034889-UTR-P-littoralis_Contig11:337194..337425Pylaiella littoralis U1_48UTRP-littoralis_Contig11 337195..337425 +
1680789424.4789562-UTR-P-littoralis_Contig11:341765..3417661680789424.4789562-UTR-P-littoralis_Contig11:341765..341766Pylaiella littoralis U1_48UTRP-littoralis_Contig11 341766..341766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789424.4158485-CDS-P-littoralis_Contig11:337425..3375071680789424.4158485-CDS-P-littoralis_Contig11:337425..337507Pylaiella littoralis U1_48CDSP-littoralis_Contig11 337426..337507 +
1680789424.4291623-CDS-P-littoralis_Contig11:338007..3381621680789424.4291623-CDS-P-littoralis_Contig11:338007..338162Pylaiella littoralis U1_48CDSP-littoralis_Contig11 338008..338162 +
1680789424.4461348-CDS-P-littoralis_Contig11:339147..3392391680789424.4461348-CDS-P-littoralis_Contig11:339147..339239Pylaiella littoralis U1_48CDSP-littoralis_Contig11 339148..339239 +
1680789424.4607558-CDS-P-littoralis_Contig11:341623..3417651680789424.4607558-CDS-P-littoralis_Contig11:341623..341765Pylaiella littoralis U1_48CDSP-littoralis_Contig11 341624..341765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.53.6

>prot_P-littoralis_Contig11.53.6 ID=prot_P-littoralis_Contig11.53.6|Name=mRNA_P-littoralis_Contig11.53.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MRGYDVSSKNETFKIVNINPVGDDYLQAVAVDENTGRIFGAGSTYDGEVQ
RRGALHAIAVNEAGDTLWEFAELGRDPLTGDFNTGGSGTFNAIAFDETTG
LLLLVGSCSGCLQEGCTVELVRETSLVIMTVVAFNASAGELVWQRQVRIW
CRSGQA*
back to top

mRNA from alignment at P-littoralis_Contig11:337195..341766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.53.6 ID=mRNA_P-littoralis_Contig11.53.6|Name=mRNA_P-littoralis_Contig11.53.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=4572bp|location=Sequence derived from alignment at P-littoralis_Contig11:337195..341766+ (Pylaiella littoralis U1_48)
CCAGCTTGTATTCATTTTTGTCAGACGGCAAAAAAACGCGCGCGCGCACA
GACAGATAGATAAATGGTAAGAGGCCGACGGAAAACTCGTAGTTATACTA
CATACAGTTGTTGCGTGATAATCTAGATATCCACACTACTAACTTACTAC
ATACAATTGTTCCTTCCTTGTGGATGACTTTTCAGGGAAACGGGAAGCGA
CTATATTATTGCTGGCGACTTCGATTACTTCATGCGCGGCTACGACGTGT
CTTCCAAGAACGAGACCTTCAAAATCGTGAACATCAATCCCGTCGGCGAT
GATTATTTGCAAGGTTCTCCTACTACTTTTACTGCTGCTGTGGGCATGAA
ATATTGTACACTCTGTATGTACTTCGTTAACATAATATACTCTGCAGATA
GGCAGGCGCAAATTATGTACGTGTTTGTATGTAGTACAGCTGATTTTCTT
CTGCAGAACAACACACACAACTACTATATTATGTTGTCACATTGAAAGTT
GTCTCTCGACAACGTCGAGATATTGCTTCCATAAACCATAAAAAATAGGT
ATAGACTAGTCTAGAAGCACGAAGTTCGTATAATAAGTTAATATGTACTG
GTATGTATGTATGCATGTGTGCTTTGGCTATTATTGAAATCCGATTCCAA
GCTGACATACATGTCATCATTCATCATGCCGTATGCATTTTTATTTGTTA
CACTCGTATGGTATGCACGATAACAAAAAAACATGATCGATCCCAGTTAA
AGGGGCGATTGTTTTGGGGTACTTTACTTCATGGTATCCTTCCCCCTCCC
TCCTGCTGAGCAGCCGTCGCCGTTGACGAGAACACGGGCCGAATATTTGG
TGCCGGGAGTACGTATGACGGTGAAGTTCAAAGGAGGGGTGCTTTGCACG
CGATCGCCGTGAACGAAGCTGGCGACACACTCTGGGAGTTCGCGGAGCTA
GGAAGGGACCCTTTGACGGTAGGTGATACGTAATGTATGTATGCATGCAT
GCACGTATGCATGTATGCATGTTTTTATGTGTATGTATGTGTATGTATGT
GTATGTGTAGACTATGTTTGTATGTAGTATGTATGACGTTGTTGTTTTAT
GTTGTAATATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTCGTTGTCGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTCTTTGTCGTTGTTTTTGTTGCTACTGTATT
CTTGTTAATGTTGTTTTGGTCGCCACAGGACACCCACCTTCCATGTGGCC
GGTTTCCCTGTGTATGTGTACGTCTATATTCCATCCTTTTTTCTTGGCCG
GCACGGTTGCTGTGCCTGGTTTCAGACTGCAAAAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACCAAACCCCACCCAACCCAACCCAACTCAGCCCAACTTGCCCT
AAACCTGAATAATGCCACTTCTAAACGATGGCTGGCTTGATTCGTTGGCC
CGTGTTTTTTTGCCTGTGTGCATAATGTTTCTGAGACTTCTGCGACACCG
ATTAGCGGCTCCTTCCTCGTAGGTGATTCCCGTCCGGATTTCACCCGACC
CACCCTCACCCAACTTTCCCCAATCCAACCCAACCCAACGCAACCTTAAG
TAACAACGACGCCTCAAATGTCAAGTAGTGTCGTTCATTGGTTCTCGAGC
TCTTCGCCTATACGAAGTACTGCATTGCTGTCTGATTCGAAGTCGCGTTT
TTGTCGCTTCCACGACATCACCGATCACCTACTACTTACTCCTAAAACGC
CCGCCAGGATTCCTACCCAATCAACCTTGACCCAACTTACGCCTATCTAT
CCGACTGTTGCCAACCCAACTAACGCCAACCTTGCCCAACCCAACCCACC
CAGGGAGACTTCAACACTGGTGGAAGTGGGACCTTCAACGCCATCGCATT
CGACGAAACGACGGGACTTCTGCTTCTTGTCGGTAGTTGCAGCGGGTGCG
TGCATCGTGTGTGTATGTGTGTGTGCGAACTGTTGTGCCCCCTCTCCCCT
CCTTGTAGTTTTTCTTCCTTGTTTTTTTAGCAGACGGGAGCAGCAGTTGT
CGGTGTCATGTTCATGTCAGATGTTTGTGATGTTTATCATGTTGTGCTTA
TGTTGCTTTGACATGGCGTTTATGTTTATTGGTGTGTAGTAGTCGTGGCG
TATACTCTTCATATCTTTTTATATTTGGGGGCAAATAAAACACGCCATGT
ATGTGTATACGGCGGTGTGTTCATACATATTCGAATATACATGCCACCAA
TCGTATCTTTAATCCCCCTGGGTTCTCTTTTATCGCGCTCGCGATCAAAC
ATCTCTTCAGTGGGAAGGAGATGTACAGCCAGACAGACACAGACAGACAG
ACAAACAGACAGACACGAAGACCGTTGGTGGTGTGTCAAAACGGGCCGCA
CGCAGGCTTGCTTGCAGATGTGAGACGGCGTTGAAGCAAACATGTATCGT
CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AAATCCTCTCTTTGTGGTAACTCCTGCAACAAACGAACCCGGTGAAACGT
ACTAGGCAGTTTACTAGCTTGATTGTCGATTGCCGGCACCTTCTTCTCCG
CTGGCTGTGGAGTGACCAAGGGCGCCGGTCTTGAAACAAACTCGGACTTC
ATGGGAGAGAGTGGAAAATATACTTCACGGACGAAGCATAATACTCCGAG
TATGTATTATAGGAGCCACCATCCGTCGTCATACTGCACGTCGCTGGAGA
TAAAACACAGGACGGGACGGGACGACCCCCCTTGACTGGATTCATAGCTC
GATTGCAATGGATGGTGGGGTGCCGGAGAGGGCGGCACCGGGCCGTGGTA
CTAGAACGGGCTATCTATGATAGCTCGTCGGGAGCTTTCGTGAGCTTCCC
AGAAAGAACCTTCCCGTTGTACATAGACTCGCAGTTTGCGTGATGTCGGC
TTGCAGCAACCACGCTACACCGCCACGCTACACGGCCACGCTCGTTCTTA
AAATCGGACCGAGATATCGACTTTTCTCTTCGAAAATTGGCAACTGAACG
CCTAGTCACAGCCAACGACGGTGTATGAAACATACAGAGAAACGAGCGCG
AGAACTTTGCGCAAAAATGAATAAATCTGATGCTTCGACTTTGGGCTAAT
CGTATAAGTAATAGTTGTACTATCACGGTTGCTGTCGTACTTGTTGAAGT
CGTAGAAGTAGCAGTGTTGGACTTTGTTATGCTGTCGTGACTCGTCAAAT
AACTATGATGTGTGTCGCTAGCCATGTGCGTATGAGCAACATTTTTTGCA
TTTACTTATTCTATGTATGTATTTCGATAGTCATTGAATTTACGAGGGTG
GTACTGGTTTCTCGGTAAGTTTTCAGGAGCAAGAATGATGCTTTCAGTAG
TAAATCAGAAAATTCATCACCCACGCATCGGCAGACTGCATTCAGATACT
ACACATACAGACCTTCCGAATCATTCTACGTTCACAGAGGAGGTACAGTA
CCGGCCCGCTCATAAGAAACTGGAAATCAGCCTCAGCCTTGGCTTCTTGT
TGTGCCACCAGCACTAAGTATGGCTATTTCTTAACCATCGTAAATTATTT
AGTGTGGCGCCGGCTGCCGAGCCCATTTTCTTACCCCAAATTTCTTAATT
TTTTAAAAATTTCCGCCTCGGTTTCTTAGAAAGGTGTTTCTTATGAGCGG
GCCGGTACTGTACCTCATCATTTGAAATATGGTCACAACAAAAGACACCC
TAGCGAAACACGATTTTATCTCTCTTCTCCTATGGTTGTGTTTCACAGAA
ACAAGAGGCCATTTGAATCACGTTTAAAGGTTCGAGGTAGTAGCTTTAAT
TGGGCTGTGCACGAGAAAAACACGCCTGATTCAACGTTGATACATTCATC
ATCATCGTTTCTGTATACAATATATCCCTTGATGACTGTGAGGAAAAACG
CGGATGATCTTCGTTTAGCCTGCTTTTGTTTTTTGCCATCCGAAACTCAT
TTTCCTTTCTGCCCTTCGCTCAGTCAGTCAGAAATCATAGTCGTCGATTG
CAGCCTTTTGTATTTTTTGTTTTATTTAGAAGTGAGATATTTACACTTGT
ACTGGTATCAACGATCATCACCGGACAGATTTAAGTCACATTCGATCGCC
GTCGGATGTTATTACCATATATTCATCGCAGAAGGAAGGGTATGAAGCAA
CGACCGGCGTCTCGCGGTGCCTGTGGTGGAAGTGCCCCCAAATATGCCGA
AAAACTCCTTGACGAAGGCAGACTTTCATCTCCTTGTTGCTGCTGCTGTT
GTTGTTGTTGTTGTTGTTGTTGTTTGCAGATGCCTCCAAGAGGGCTGCAC
GGTGGAGCTTGTTCGCGAGACGTCATTAGTAATCATGACCGTCGTCGCCT
TCAACGCCTCAGCGGGAGAGCTCGTGTGGCAACGGCAGGTGAGGATTTGG
TGTCGATCAGGGCAGGCTTGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig11:337195..341766+

>mRNA_P-littoralis_Contig11.53.6 ID=mRNA_P-littoralis_Contig11.53.6|Name=mRNA_P-littoralis_Contig11.53.6|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig11:337195..341766+ (Pylaiella littoralis U1_48)
ATGCGCGGCTACGACGTGTCTTCCAAGAACGAGACCTTCAAAATCGTGAA
CATCAATCCCGTCGGCGATGATTATTTGCAAGCCGTCGCCGTTGACGAGA
ACACGGGCCGAATATTTGGTGCCGGGAGTACGTATGACGGTGAAGTTCAA
AGGAGGGGTGCTTTGCACGCGATCGCCGTGAACGAAGCTGGCGACACACT
CTGGGAGTTCGCGGAGCTAGGAAGGGACCCTTTGACGGGAGACTTCAACA
CTGGTGGAAGTGGGACCTTCAACGCCATCGCATTCGACGAAACGACGGGA
CTTCTGCTTCTTGTCGGTAGTTGCAGCGGATGCCTCCAAGAGGGCTGCAC
GGTGGAGCTTGTTCGCGAGACGTCATTAGTAATCATGACCGTCGTCGCCT
TCAACGCCTCAGCGGGAGAGCTCGTGTGGCAACGGCAGGTGAGGATTTGG
TGTCGATCAGGGCAGGCTTGA
back to top