mRNA_P-littoralis_Contig1096.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1096.16.1
Unique NamemRNA_P-littoralis_Contig1096.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1096.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1096contigP-littoralis_Contig1096:64637..64815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789423.337234-CDS-P-littoralis_Contig1096:64636..647251680789423.337234-CDS-P-littoralis_Contig1096:64636..64725Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 64637..64725 +
1680789423.3490145-CDS-P-littoralis_Contig1096:64737..648131680789423.3490145-CDS-P-littoralis_Contig1096:64737..64813Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 64738..64813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1096.16.1prot_P-littoralis_Contig1096.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1096 64637..64813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1096.16.1

>prot_P-littoralis_Contig1096.16.1 ID=prot_P-littoralis_Contig1096.16.1|Name=mRNA_P-littoralis_Contig1096.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
NAGTAGSARKKLPEMPEGWLYPHLIMACACGNTPSEWKNLCASGGKPEAL
KEEDK
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mRNA from alignment at P-littoralis_Contig1096:64637..64815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1096.16.1 ID=mRNA_P-littoralis_Contig1096.16.1|Name=mRNA_P-littoralis_Contig1096.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=179bp|location=Sequence derived from alignment at P-littoralis_Contig1096:64637..64815+ (Pylaiella littoralis U1_48)
AATGCTGGGACTGCGGGTAGTGCTAGGAAGAAGTTGCCGGAGATGCCTGA
GGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCCCCCTGGA
GCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCGGCGGGAAA
CCCGAGGCGTTAAAGGAAGAAGATAAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1096:64637..64815+

>mRNA_P-littoralis_Contig1096.16.1 ID=mRNA_P-littoralis_Contig1096.16.1|Name=mRNA_P-littoralis_Contig1096.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1096:64637..64815+ (Pylaiella littoralis U1_48)
AATGCTGGGACTGCGGGTAGTGCTAGGAAGAAGTTGCCGGAGATGCCTGA
GGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGCGGGAACACCC
CGTCCGAGTGGAAAAACCTGTGTGCGTCCGGCGGGAAACCCGAGGCGTTA
AAGGAAGAAGATAAG
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