mRNA_P-littoralis_Contig1096.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1096.11.1
Unique NamemRNA_P-littoralis_Contig1096.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1096.11.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.260e-14
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 3 
Query:   21 SEMQQA--AVVARTLAGEATAALRARPQQSQLGIPLSKDLLWGFRRVLVKFGGKKLSQADQKTFQALPIAYAAVSTKQ 248
            SE+ +A  A  AR LA EA    R   +QS+LG+PLS DLL  FR VL+K GGK +S   QKTFQA PIAYAA++ KQ
Sbjct:   61 SEVMEADQAAAARALAQEAALRAREEAEQSKLGVPLSNDLLRAFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQ 138
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BLAST of mRNA_P-littoralis_Contig1096.11.1 vs. uniprot
Match: A0A6H5LQW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQW7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.820e-14
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:   24 EMQQAAVVARTLAGEATAALRARPQQSQLGIPLSKDLLWGFRRVLVKFGGKKLSQADQKTFQALPIAYAAVSTKQ 248
            E  QAA  AR LA  A    R   +QS+LG+PLS DLL  FR VL+K GGK +S   QKTFQA PIAYAA++ KQ
Sbjct:    2 EADQAAA-ARALAQAAALRARDEAEQSKLGVPLSNDLLREFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQ 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1096.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE4.260e-1456.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQW7_9PHAE5.820e-1457.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1096contigP-littoralis_Contig1096:61485..61732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size249
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789423.2914188-UTR-P-littoralis_Contig1096:61484..614981680789423.2914188-UTR-P-littoralis_Contig1096:61484..61498Pylaiella littoralis U1_48UTRP-littoralis_Contig1096 61485..61498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789423.3069553-CDS-P-littoralis_Contig1096:61498..617321680789423.3069553-CDS-P-littoralis_Contig1096:61498..61732Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 61499..61732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1096.11.1prot_P-littoralis_Contig1096.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1096 61499..61732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1096.11.1

>prot_P-littoralis_Contig1096.11.1 ID=prot_P-littoralis_Contig1096.11.1|Name=mRNA_P-littoralis_Contig1096.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MASEMQQAAVVARTLAGEATAALRARPQQSQLGIPLSKDLLWGFRRVLVK
FGGKKLSQADQKTFQALPIAYAAVSTKQ
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mRNA from alignment at P-littoralis_Contig1096:61485..61732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1096.11.1 ID=mRNA_P-littoralis_Contig1096.11.1|Name=mRNA_P-littoralis_Contig1096.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=248bp|location=Sequence derived from alignment at P-littoralis_Contig1096:61485..61732+ (Pylaiella littoralis U1_48)
AGCAGTGGGTAATCATGGCGTCTGAGATGCAACAAGCAGCGGTAGTTGCG
CGGACGCTTGCTGGAGAGGCTACTGCAGCTTTACGGGCCAGACCTCAGCA
ATCGCAGCTCGGAATTCCCCTGAGCAAGGACCTGCTGTGGGGTTTTCGAC
GGGTACTGGTGAAGTTTGGCGGAAAGAAACTGAGCCAAGCAGACCAGAAG
ACCTTCCAGGCTCTCCCCATCGCGTACGCTGCCGTCTCCACCAAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1096:61485..61732+

>mRNA_P-littoralis_Contig1096.11.1 ID=mRNA_P-littoralis_Contig1096.11.1|Name=mRNA_P-littoralis_Contig1096.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig1096:61485..61732+ (Pylaiella littoralis U1_48)
ATGGCGTCTGAGATGCAACAAGCAGCGGTAGTTGCGCGGACGCTTGCTGG
AGAGGCTACTGCAGCTTTACGGGCCAGACCTCAGCAATCGCAGCTCGGAA
TTCCCCTGAGCAAGGACCTGCTGTGGGGTTTTCGACGGGTACTGGTGAAG
TTTGGCGGAAAGAAACTGAGCCAAGCAGACCAGAAGACCTTCCAGGCTCT
CCCCATCGCGTACGCTGCCGTCTCCACCAAGCAG
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