mRNA_P-littoralis_Contig1096.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1096.13.1
Unique NamemRNA_P-littoralis_Contig1096.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1096.13.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.700e-6
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    4 KEAAHDLDLPLPLDLDEKINYTTLGTG------------ACWTKFGTLKTEHTKGTQAQFD 150
            K AA  L+LPLPLD+++K+  T+LGTG            ACWTK+ T+K ++TK  Q  +D
Sbjct:  168 KAAAKKLELPLPLDIEDKMYLTSLGTGKKPAVSFKDKPRACWTKWETIKRDYTKEIQIIYD 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1096.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE1.700e-644.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1096contigP-littoralis_Contig1096:61817..62304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789423.005837-CDS-P-littoralis_Contig1096:61816..618981680789423.005837-CDS-P-littoralis_Contig1096:61816..61898Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 61817..61898 +
1680789423.016154-CDS-P-littoralis_Contig1096:62230..623041680789423.016154-CDS-P-littoralis_Contig1096:62230..62304Pylaiella littoralis U1_48CDSP-littoralis_Contig1096 62231..62304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1096.13.1prot_P-littoralis_Contig1096.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1096 61817..62304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1096.13.1

>prot_P-littoralis_Contig1096.13.1 ID=prot_P-littoralis_Contig1096.13.1|Name=mRNA_P-littoralis_Contig1096.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
VKEAAHDLDLPLPLDLDEKINYTTLGTGACWTKFGTLKTEHTKGTQAQFD
M*
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mRNA from alignment at P-littoralis_Contig1096:61817..62304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1096.13.1 ID=mRNA_P-littoralis_Contig1096.13.1|Name=mRNA_P-littoralis_Contig1096.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=488bp|location=Sequence derived from alignment at P-littoralis_Contig1096:61817..62304+ (Pylaiella littoralis U1_48)
GTGAAGGAGGCGGCGCATGATCTCGATTTGCCCCTACCGTTGGACCTCGA
CGAGAAGATCAACTACACTACCTTGGGCACAGGTACATAGGATGAAAGGG
TTGGGGTTGTGGCGACAGGGCGTGTGACAGTTTTACCGCGGGAGAGTGTT
GTCCGGGCGCCCGAGCACCTTCCGCTGATGTTGCTCAGTTCACATAATAG
CGCGGTGATGCCACATATCCTATCTATGTGCTACTGCTGTAGAATGAAAC
ATGCGTAAGTTAAACGTGTCGGACTTGTCCTGAAATTGTGAATCGATCCC
ACCATGTTGTTTAAAAAAAGTCCTTCGGCGCGTCGATAACCCGTTCCCCT
CTACGATTCCTTTCGTCTATCTGTACACGGGCAAAACCCATACTCACTTT
CACCCAGAATCCAGGTGCATGCTGGACGAAATTTGGGACTCTCAAGACCG
AGCACACCAAAGGGACTCAGGCGCAGTTCGATATGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1096:61817..62304+

>mRNA_P-littoralis_Contig1096.13.1 ID=mRNA_P-littoralis_Contig1096.13.1|Name=mRNA_P-littoralis_Contig1096.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig1096:61817..62304+ (Pylaiella littoralis U1_48)
GTGAAGGAGGCGGCGCATGATCTCGATTTGCCCCTACCGTTGGACCTCGA
CGAGAAGATCAACTACACTACCTTGGGCACAGGTGCATGCTGGACGAAAT
TTGGGACTCTCAAGACCGAGCACACCAAAGGGACTCAGGCGCAGTTCGAT
ATGTGA
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