mRNA_P-littoralis_Contig1095.33.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.550e-23 Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 262 HNHIHDTDGMHPKPASRRSSIVASRNKGESSAIRVSRAIDRRAKLATGASFVQQLRENFRDRN----SPIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPK----DPTFRSDLKASGEQLERLRASAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
HN +H T P+ A R R +G S + R+ ++R K LR F+DR P E+A LT VVMS A++AP A+ R GW SE Q EI EA V+ +QLR A K + T ++ LKA+ ++ R A+ +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R TSQNIK EDG
Sbjct: 102 HNLVHTTVRSPPRVAPNR------RTRGNSGSSRIRIDLERLRKDV-------HLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDG 298
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.640e-23 Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 262 HNHIHDTDGMHPKPASRRSSIVASRNKGESSAIRVSRAIDRRAKLATGASFVQQLRENFRDRN----SPIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPK----DPTFRSDLKASGEQLERLRASAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
HN +H T P+ A R R +G S + R+ ++R K LR F+DR P E+A LT VVMS A++AP A+ R GW SE Q EI EA V+ +QLR A K + T ++ LKA+ ++ R A+ +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R TSQNIK EDG
Sbjct: 240 HNLVHTTVRSPPRVAPNR------RTRGNSGSSRIRIDLERLRKDV-------HLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDG 436
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.700e-23 Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 262 HNHIHDTDGMHPKPASRRSSIVASRNKGESSAIRVSRAIDRRAKLATGASFVQQLRENFRDRN----SPIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPK----DPTFRSDLKASGEQLERLRASAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
HN +H T P+ A R R +G S + R+ ++R K LR F+DR P E+A LT VVMS A++AP A+ R GW SE Q EI EA V+ +QLR A K + T ++ LKA+ ++ R A+ +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R TSQNIK EDG
Sbjct: 352 HNLVHTTVRSPPRVAPNR------RTRGNSGSSRIRIDLERLRKDV-------HLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDG 548
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.750e-23 Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 262 HNHIHDTDGMHPKPASRRSSIVASRNKGESSAIRVSRAIDRRAKLATGASFVQQLRENFRDRN----SPIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPK----DPTFRSDLKASGEQLERLRASAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
HN +H T P+ A R R +G S + R+ ++R K LR F+DR P E+A LT VVMS A++AP A+ R GW SE Q EI EA V+ +QLR A K + T ++ LKA+ ++ R A+ +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R TSQNIK EDG
Sbjct: 473 HNLVHTTVRSPPRVAPNR------RTRGNSGSSRIRIDLERLRKDV-------HLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDG 669
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5KXP2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.550e-22 Identity = 68/158 (43.04%), Postives = 93/158 (58.86%), Query Frame = 1
Query: 418 QQLRENFRDRNS----PIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPKDPTFRSDLKASGEQLERLRA----SAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYED 852
+ LR +F+DR S P + + +E+A LT VMS A+ AP A+ R GW SE Q EI EA + +QL A K+ F + LKA + + R+ A+ F EG+ QL+KKSR+GD+AGF +H+K +DVEG+R FTSQNIK ED
Sbjct: 21 KHLRVSFQDRASSRPPPTVPRGSTEETAAELTPTVMSAAAETAPLARCARGQRGWYTSE-AQHEISEASKEIKAAQQQLHGASKNSAFEATLKAMLKAARKKRSIARWRALETFFEGYVRQLEKKSREGDEAGFNRHLKMIDVEGKRSFTSQNIKDED 177
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5JV16_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV16_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.090e-22 Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 418 QQLRENFRDRNS----PIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPK----DPTFRSDLKASGEQLERLRASAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
+ LR+ F++R S P E+A LT VMS A+ AP A+ R GW SE Q EI +A + +QLR A K + T ++ LKA+ ++ R A+ +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R FTSQNIK EDG
Sbjct: 63 KHLRDAFQNRASSRPPPTALRRPTGETAAELTATVMSAAAETAPLARCARGQRGWYTSE-AQHEISDASKEIKAAQQQLRGASKNSACEATLKAMLKAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDG 220
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.260e-22 Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1
Query: 418 QQLRENFRDRNS----PIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPKDPTFRSDLKASGEQLERLRA----SAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
+ LR+ F++R S P E+A LT VMS A+ AP A+ R W SE VQ EI EA + +QLR A K+ TF + LKA + R+ A+ +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R FTSQNIK EDG
Sbjct: 69 KHLRDAFQNRASSRPPPTALRRPTGETAAELTATVMSAAAETAPLARCARGQRSWYTSE-VQHEISEASKEINAAQQQLRGASKNSTFEATLKAMLKAARTKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDG 226
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE) HSP 1 Score: 105 bits (262), Expect = 8.490e-22 Identity = 84/211 (39.81%), Postives = 112/211 (53.08%), Query Frame = 1
Query: 262 HNHIHDTDGMHPKPASRRSSIVASRNKGESSAIRVSRAIDRRAKLATGASFVQQLRENFRDRN----SPIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPK----DPTFRSDLKASGEQLERLRASAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
HN +H T P+ A R R +G S + R+ ++R K LR F+DR P E+A LT VVMS A++AP A+ R GW SE Q EI +A + +QLR A K + T ++ LKA+ ++ R A+ F EG QL+KKSR+GDQAGFY+H+K +DVEG+R FTSQNIK EDG
Sbjct: 180 HNLVHTTVRSPPRVAPNR------RTRGNSGSSRIRIDLERLRKDV-------HLRAVFQDRALNRPPPTALSRPTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISDASKEIKAAQQQLRGASKNSACEATLKAMLKAARKKRSIARWRALETFFEGCVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDG 376
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5LLA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLA9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 9.890e-22 Identity = 70/159 (44.03%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 418 QQLRENFRDRNS----PIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPKDPTFRSDLKASGEQLERLRA----SAVNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYEDG 855
+ LR F++R S P G E+A LT VMS A+ AP A+ R GW SE Q EI +A + +QLR A K+ F + LKA + + R+ A+ F EG+ QL+KKSR+GDQ GFY+H+K +DVEG+R FTSQNIK EDG
Sbjct: 17 KHLRVAFQNRASGRPPPTALGRPTGETAAELTATVMSAAAETAPMARCERGQRGWYTSE-AQHEISQASKEIKAAQQQLRGASKNSAFEATLKAMLKAARKKRSIARLRALETFFEGYVRQLEKKSREGDQPGFYRHLKMIDVEGKRSFTSQNIKDEDG 174
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Match: A0A6H5K3M1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M1_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.570e-21 Identity = 66/146 (45.21%), Postives = 89/146 (60.96%), Query Frame = 1
Query: 442 DRNSPIMEGATADESACALTTVVMSTVADVAPRAKGNRLSSGWCASEEVQREIHEA-----VSCKQLRRAPKDPTFRSDLKASGEQLERLRASA----VNEFLEGFGSQLDKKSRQGDQAGFYQHMKGLDVEGERVFTSQNIKYED 852
+R P E+A LT V+MS A++AP A+ R GW SE Q EI EA V+ +QLR A K+ F + LKA + + R+SA + +F EG+ QL+KKSR+GDQAGFY+H+K +DVEG+R TSQN+K ED
Sbjct: 281 NRPPPTALSRPTGETAAELTAVMMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDFETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNMKDED 425 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1095.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1095.33.1 >prot_P-littoralis_Contig1095.33.1 ID=prot_P-littoralis_Contig1095.33.1|Name=mRNA_P-littoralis_Contig1095.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=192bp MHPKPASRRSSIVASRNKGESSAIRVSRAIDRRAKLATGASFVQQLRENFback to top mRNA from alignment at P-littoralis_Contig1095:68684..69559- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1095.33.1 ID=mRNA_P-littoralis_Contig1095.33.1|Name=mRNA_P-littoralis_Contig1095.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig1095:68684..69559- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1095:68684..69559- >mRNA_P-littoralis_Contig1095.33.1 ID=mRNA_P-littoralis_Contig1095.33.1|Name=mRNA_P-littoralis_Contig1095.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=576bp|location=Sequence derived from alignment at P-littoralis_Contig1095:68684..69559- (Pylaiella littoralis U1_48)back to top |