mRNA_P-littoralis_Contig1095.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1095.14.1
Unique NamemRNA_P-littoralis_Contig1095.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1095.14.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 5.250e-73
Identity = 138/299 (46.15%), Postives = 176/299 (58.86%), Query Frame = 2 
Query:    2 RAYLAMAVLHDFLGNQTRSHGYLKSAKSIVCALPPERLPTGIHDVLRYVGKSWVFESGAASQEEIDDFLEDAVPIWKLRGSFMEQDVCSLILAVDMHVDHALFDERRAANVGLAEEQHWSSRSSVGTVSNAL----------------FVQEIL----------------VGMHKEALPEMLRLWEHFQSSRINLGLGGLLYYGNLGFLLAFHNDPAAST-SLYRSLDAMLRYPGLCRHNCVLHLAHTQLWCMATDHHWEQYETLRDAYNHVRPAGYSAAPPLEAWLGMSDICEHVYCR 799
            RA LAMA +H+FLG+Q  +H Y++ A SIV ALPP ++  G++D+LRY GKSWVFE G AS+++ID + +   PIWKL    +EQD+C L+LAVD  VD  +  +  A     AE    SS ++ G  S                   FV   L                +GM KEA+PE+LR       +++  GLG LLYYGNL FL A  N+ AAS  S +RS+ A+LRYPGLCR+N + H  HTQLW +A     EQYE LR AYN +RPA  S APP E W GMSDIC+H YCR
Sbjct:  365 RANLAMAFVHNFLGDQVNNHRYVELANSIVSALPPVQVTLGVYDLLRYAGKSWVFEVGLASKKDIDAYWQSVAPIWKLPEKVVEQDICGLVLAVDTRVDQLVLAD--APGTPAAEGLQRSSDATAGAASRPSPLTYGEADDAEGKMGGFVDAPLPTKEGGLAPPHPTDPFLGM-KEAMPELLRANSFLSRAKMQSGLGSLLYYGNLCFLQALDNEIAASVGSFHRSVSALLRYPGLCRYNSLSHNVHTQLWGLANARRREQYEALRAAYNPMRPARLSPAPPFEEWTGMSDICDHPYCR 660
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BLAST of mRNA_P-littoralis_Contig1095.14.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 9.180e-63
Identity = 129/297 (43.43%), Postives = 172/297 (57.91%), Query Frame = 2 
Query:    2 RAYLAMAVLHDFLGNQTRSHGYLKSAKSIVCALPPERLPTGIHDVLRYVGKSWVFESGAASQEEIDDFLEDAVPIWKLRGSFMEQDVCSLILAVDMHVDHALFDER---------RAANVGLAEEQHWSSRSSVGTVSNAL-----FVQEIL----------------VGMHKEALPEMLRLWEHFQSSRINLGLGGLLYYGNLGFLLAFHNDPAAST-SLYRSLDAMLRYPGLCRHNCVLHLAHTQLWCMATDHHWEQYETLRDAYNHVRPAGYSAAPPLEAWLGMSDICEHVYCR 799
            RA LAMA +H+FLG+Q ++H Y++ A SIV ALPP ++  G++D+L+Y GKSWVFE G AS+++ID + +   PIWKL    +EQD+C L+LAVD  +D  +  +          ++++   AE     S  + G   +A      FV   L                +GM KEA+PE+LR               GLL   NL FL A +ND AAS  S +RS+ A+LRYPGLCR+N + H AHTQLW +A     E YE LR AYN +RPA  S APP + W GMSDIC+H YCR
Sbjct:  303 RANLAMAFVHNFLGDQVKNHRYVELANSIVSALPPGQVSLGVYDLLKYAGKSWVFEVGLASRKDIDAYWQSVSPIWKLPEKVVEQDICGLVLAVDTRIDQLVLADAPGTPAAEGLQSSSDATAEVSSRPSPLTYGEDDDAEGMMGGFVDAPLPTKEGGLASPHPTDPFLGM-KEAMPELLRA-------------NGLLSR-NLCFLQALNNDIAASAGSFHRSVSALLRYPGLCRYNSLSHNAHTQLWGLANARRREHYEALRAAYNPMRPASLSPAPPFDEWTGMSDICDHPYCR 584
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BLAST of mRNA_P-littoralis_Contig1095.14.1 vs. uniprot
Match: D7FY46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY46_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.620e-35
Identity = 75/138 (54.35%), Postives = 88/138 (63.77%), Query Frame = 2 
Query:  407 EILVGMHKEALPEMLRLWEHFQSSRINLGLGGLLYYGNLGFL-LAFHN-----DPA-ASTSLYRSLDAMLRYPGLCRHNCVLHLAHTQLWCMATDHHWEQYETLRDAYNHVRPAGYSAAPPLEAWLGMSDICEHVYCR 799
            E+ V MH+ ALPEMLRL EHF+SS + L +G LLYY NL  L L  H      D A A  ++ R L  +LR+PGLCR+ C  HL HTQLWC+A     E YE LR AYN VRP+G    P  E W GMSDIC HV+CR
Sbjct:   88 EVAVKMHRGALPEMLRLKEHFESS-MRLDVGRLLYYMNLSLLQLVNHGRGGGGDVADAVEAVQRGLRVILRFPGLCRYKCWSHLCHTQLWCLALGPDREPYEELRAAYNPVRPSGSPLVPAFEHWQGMSDICNHVHCR 224
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BLAST of mRNA_P-littoralis_Contig1095.14.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.570e-26
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 2 
Query:  518 NLGFLLAFHNDPAAS-TSLYRSLDAMLRYPGLCRHNCVLHLAHTQLWCMATDHHWEQYETLRDAYNHVRPAGYSAAPPLEAWLGMSDICEHVYC 796
            NL FL A +N+PAAS  S +RS+ A+LRYPGLCR+N   H AHTQLW +A     EQYE LR AYN +RPA  S APP E   G+SDIC+H YC
Sbjct:   44 NLSFLQALNNEPAASGESFHRSVSALLRYPGLCRYNPRSHSAHTQLWALANARRREQYEALRAAYNPMRPARLSPAPPFEECTGVSDICDHPYC 137
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BLAST of mRNA_P-littoralis_Contig1095.14.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.110e-23
Identity = 76/274 (27.74%), Postives = 125/274 (45.62%), Query Frame = 2 
Query:    2 RAYLAMAVLHDFLGNQTRSHGYLKSAKSIVCALPPERLPTGIHDVLRYVGKSWVFESGAASQEEIDDFLE------DAVPIWKLRGSFMEQDVCSLILAVDMHVDHALFDERRAANVGLAEEQHWSSRSSVGTVSNALFVQEILVGMHKEALPEMLRLWEHFQSSRINLGLGGLLYYGNLGFLLAFHNDPA-ASTSLYRSLDAMLRYPGLCRHNCVLHLAHTQLWCMATDHHWEQYETLRDAYNHVRPAGYSA-APPLEAWLGMSDICEHVYCR 799
            RA+ AMA+  DF+GN+ +   Y+  AKSI+ ALPPE++P  + D   +V    + E  +   +E  ++++      ++  + K      ++D+C  +L  D+ +      +         +     S  S    +      E+ +    E LPE   +    Q+  +  G+G L ++  + +        + A   L+R  D  L  PG+CR     HLAH  L C+      E+YE+LR AYN V     +   PP E W GM  IC+HV+CR
Sbjct:  177 RAFTAMALFQDFMGNEDKFIKYIDFAKSIINALPPEKVPADLLDTHLFVKACDMLEGYSHQVDE--EYIKAASGTLESCAMAKEPRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFNEDSSDVGSLRSFDQSTEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWAMDGLWRCADIFLTSPGICRLTAWTHLAHCTLACLLLSGRHEKYESLRQAYNSVMDEPSAVRVPPAEEWTGMECICKHVFCR 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1095.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K678_9PHAE5.250e-7346.15Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LSE2_ECTSI9.180e-6343.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY46_ECTSI3.620e-3554.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S2_9PHAE5.570e-2659.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC3_ECTSI1.110e-2327.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1095contigP-littoralis_Contig1095:28958..31996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons7
Cds size783
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1095.14.1prot_P-littoralis_Contig1095.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1095 28974..31996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789422.7271237-UTR-P-littoralis_Contig1095:28957..289731680789422.7271237-UTR-P-littoralis_Contig1095:28957..28973Pylaiella littoralis U1_48UTRP-littoralis_Contig1095 28958..28973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789422.7355704-CDS-P-littoralis_Contig1095:28973..290061680789422.7355704-CDS-P-littoralis_Contig1095:28973..29006Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 28974..29006 +
1680789422.7464771-CDS-P-littoralis_Contig1095:29394..294661680789422.7464771-CDS-P-littoralis_Contig1095:29394..29466Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 29395..29466 +
1680789422.7606227-CDS-P-littoralis_Contig1095:29938..300491680789422.7606227-CDS-P-littoralis_Contig1095:29938..30049Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 29939..30049 +
1680789422.7697117-CDS-P-littoralis_Contig1095:30300..305421680789422.7697117-CDS-P-littoralis_Contig1095:30300..30542Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 30301..30542 +
1680789422.7789583-CDS-P-littoralis_Contig1095:30912..309541680789422.7789583-CDS-P-littoralis_Contig1095:30912..30954Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 30913..30954 +
1680789422.790174-CDS-P-littoralis_Contig1095:31346..314571680789422.790174-CDS-P-littoralis_Contig1095:31346..31457Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 31347..31457 +
1680789422.7991068-CDS-P-littoralis_Contig1095:31824..319961680789422.7991068-CDS-P-littoralis_Contig1095:31824..31996Pylaiella littoralis U1_48CDSP-littoralis_Contig1095 31825..31996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1095.14.1

>prot_P-littoralis_Contig1095.14.1 ID=prot_P-littoralis_Contig1095.14.1|Name=mRNA_P-littoralis_Contig1095.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp
MAVLHDFLGNQTRSHGYLKSAKSIVCALPPERLPTGIHDVLRYVGKSWVF
ESGAASQEEIDDFLEDAVPIWKLRGSFMEQDVCSLILAVDMHVDHALFDE
RRAANVGLAEEQHWSSRSSVGTVSNALFVQEILVGMHKEALPEMLRLWEH
FQSSRINLGLGGLLYYGNLGFLLAFHNDPAASTSLYRSLDAMLRYPGLCR
HNCVLHLAHTQLWCMATDHHWEQYETLRDAYNHVRPAGYSAAPPLEAWLG
MSDICEHVYCR
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mRNA from alignment at P-littoralis_Contig1095:28958..31996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1095.14.1 ID=mRNA_P-littoralis_Contig1095.14.1|Name=mRNA_P-littoralis_Contig1095.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3039bp|location=Sequence derived from alignment at P-littoralis_Contig1095:28958..31996+ (Pylaiella littoralis U1_48)
CAGGGCTTACCTCGCTATGGCCGTCTTGCACGACTTCCTAGGCAACCAGG
CAAGTCTGTGTGTGCTGCTCTTGTGACAAACGGAATTTCTCTTTGGGATC
GATACTCCAGGTCCTTTGTCATGATCCATCACCCAACGTCGTCATCTTGT
GCTACAGAAAAGGCATTTCGCGCCTTCCGTAACGCACACACATCACGCAG
TAACTGCTGTGCACCTATTTCCACCCTTTCCTGGTACGTTACTCCCGTTC
CTTGACGCCCCTTTAGGCCTTGAATGTATGATCACTATTCATCCAAGTAG
CTTTAACGTTCACACAATTACTGAATACAGGCTAGACGGGATTTCATGGT
CACAGAGATAGTATATATCGAAGGTCGATTTTACCTAGTTGATAACCCCC
CAACCCCCGCTTATTACACGCGCTTTCTAATTCCCAGACGAGGAGCCACG
GCTACTTGAAGTCCGCGAAAAGCATCGTTTGTGCATTGCCGCCAGAACGA
CTTCCTACGGTAAGCTCCTTCATCCGCATGCCTAGCGCAAGGGCGTGCGC
GTGCTTTTTGCTGGTGTGGGTTTTCACACCTACCAAACAGTTTCCTCTGT
TGCACGTAATGTTTTGTTTTGCGCATATTCTGCGCTCCTCAGCCGTGCAC
AATGGAGGGAAAAACCTTGCTTGGGCACCCTGAATATCGTTGAGTGCCGT
GGACCTTCCTGCACCGGGTTGCCTTCCTGCGTTTTCGACATGAAACCTCT
CGAATTATCGTATCGCGGCCAGCTACAACTCGTGTTGTGCTCGCGGGTTG
CGGGTATGTCCCAGACATTCGATAAATTTGCGTGGCTTATGTTTATGTCT
CCTTTGCACGACTGGCACATAACTTCGTCGGAGCGGCCTTGGTTCGGTTT
GCCCGTTTTCATTGAACGCGTTGCACAGTACGTTGCCTCCATTATCTGGT
AAAACGCTTTACCTCGCAAATTTCACTGCAGGGTATACACGACGTGCTGA
GATACGTAGGTAAATCTTGGGTGTTCGAGAGTGGTGCAGCCTCCCAGGAA
GAGATTGATGACTTCTTGGAAGACGCGGTGCCCATTTGGAAGGTAAGGCA
CGCAGAGGTTTCGCGCTCTTGAAGTGTTCTATTCTCATGTGTAGGCGGTG
AAATGTTCTGATTGGATAGCAAAGTTCTGCTCGGCAACGACGCGGATGTT
ACCAACATCCCGCCAAACACCATGGTTACCCGAAACTCGAGGGCCACGGA
CCAATTTGGGGACACGTGTCCTCCCTTAAATCCTCCCCTGTGCCCGGCCC
ACCCACCCGCACGGTCCATGCCGGTAACCTCCGGCATCTGCAGCTGCGAG
GCAGTTTCATGGAACAAGACGTTTGCAGCCTGATCCTTGCTGTCGACATG
CACGTTGACCACGCACTTTTTGACGAGAGACGCGCCGCGAATGTGGGCCT
GGCAGAGGAGCAGCACTGGTCGTCACGAAGCAGTGTTGGAACGGTCTCTA
ACGCACTTTTCGTTCAAGAAATATTGGTGGGGATGCACAAAGAGGCGTTA
CCAGAAATGCTACGCCTGTGGGAGCATTTTCAGAGGTGGGAGAGGAGATG
ACCTTGCGGAGATGGTCTTTGGTATTCCATCGCGTCTCTTCCAGGTAGCG
GTGTATATTCCGTGAGATTCGCCTTCCTCGGCCGTCGCACGCGGATATCC
GCACGGCGCAGCTGGTTGCCATCGTGAATTTGCCAACAGCAGCTGACGCC
GAAACAAGCCTAACGGTTCACACGCGACCATGACGACGTCGGTCTTTTGT
GCTGAGAAACGCATCATCACCATCTATGCGCCACCAGTTTTTCACAAAGC
ACATGACCTCTAAAAGCTTCGTCGCGTGTGTATCCCGTCTTTTGACCACC
ACCACGACCCGCCGCCTGCGGATCCCAATTACGAAACTACATATGGCGAA
AGTAGTTCCAGGATAAACCTGGGGCTCGGGGGCCTCTTATACTACGGGTG
AGCATTCGTTTCGACCGTAGATTAGGTTGAGTGCACCCATGAAGCACTTG
CTGTAGGGAACTTGCGTACGTTTGACAAGCACGTTTTTTCGGGTAGGGTT
CGTCCCGCTCGGTGGAGGGTGTTCTCCCTGTACTGGTCCGTCGTCAAAAC
ATTGGTTATGGCAGACATGTCGTCGAGTTCTTGCTCGCCCGATCGACTTC
TCTCCCAGTCGGCAATTGGTGGAAAAATATCTCGATTAATGTCTGTATGG
ATGAGTTTTCTCCTTCGCCTACACAAAACACAAATGTGACAACCAGCATT
ATTGGATCTCGCTCTTTCAAGCTTGCTCCGAACACATGCACAGTATACAC
ATATTTTCCGAAGTCTTTGAAAATCCTGTTCGCAAGCAGGAATCTAGGAT
TCTTGCTGGCCTTCCACAACGATCCCGCTGCGTCAACATCCTTGTATCGG
AGTCTGGATGCGATGCTGCGCTACCCGGGGTTGTGCCGCCACAATTGCGT
GTGAGTATGCCGTCTTCAGGATAGGAGTTGTGGAAATCTTACGTGGCACC
TTGGGGCTACCACTACGCGCCTTACTTTCACGCGAATCTACGGTTCAACG
TCCACAGTGTGGTCCTGATCACATGCATGCCGTGCCGCTCAGAAAACATC
CCCTCTGCTGCAGTAGCTCCTGGCCTTTGACCACGAAAGGCAACCGAAAC
CGATGCTTGAGGTCTTCAACGGTACATAACATTTTCCTAAATACTTACGT
CAAGTCGTGGACGTTCGTCCAAAGTGTCTGTTGTGGTCGTGCCCCTCGTG
TTGTCGGCGTGTTTCTCCCGCTCAGCGTCCGCCCTCTGTGTTGTACGGTA
CGCTGGTGCGTGAGCAGGTTGCACCTTGCTCACACTCAGCTCTGGTGTAT
GGCCACCGATCATCACTGGGAGCAGTACGAGACGCTCAGAGACGCATACA
ACCACGTGCGACCAGCAGGGTACTCAGCTGCCCCACCTCTAGAGGCGTGG
CTAGGGATGTCTGACATCTGCGAGCACGTGTACTGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1095:28958..31996+

>mRNA_P-littoralis_Contig1095.14.1 ID=mRNA_P-littoralis_Contig1095.14.1|Name=mRNA_P-littoralis_Contig1095.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig1095:28958..31996+ (Pylaiella littoralis U1_48)
ATGGCCGTCTTGCACGACTTCCTAGGCAACCAGACGAGGAGCCACGGCTA
CTTGAAGTCCGCGAAAAGCATCGTTTGTGCATTGCCGCCAGAACGACTTC
CTACGGGTATACACGACGTGCTGAGATACGTAGGTAAATCTTGGGTGTTC
GAGAGTGGTGCAGCCTCCCAGGAAGAGATTGATGACTTCTTGGAAGACGC
GGTGCCCATTTGGAAGCTGCGAGGCAGTTTCATGGAACAAGACGTTTGCA
GCCTGATCCTTGCTGTCGACATGCACGTTGACCACGCACTTTTTGACGAG
AGACGCGCCGCGAATGTGGGCCTGGCAGAGGAGCAGCACTGGTCGTCACG
AAGCAGTGTTGGAACGGTCTCTAACGCACTTTTCGTTCAAGAAATATTGG
TGGGGATGCACAAAGAGGCGTTACCAGAAATGCTACGCCTGTGGGAGCAT
TTTCAGAGTTCCAGGATAAACCTGGGGCTCGGGGGCCTCTTATACTACGG
GAATCTAGGATTCTTGCTGGCCTTCCACAACGATCCCGCTGCGTCAACAT
CCTTGTATCGGAGTCTGGATGCGATGCTGCGCTACCCGGGGTTGTGCCGC
CACAATTGCGTGTTGCACCTTGCTCACACTCAGCTCTGGTGTATGGCCAC
CGATCATCACTGGGAGCAGTACGAGACGCTCAGAGACGCATACAACCACG
TGCGACCAGCAGGGTACTCAGCTGCCCCACCTCTAGAGGCGTGGCTAGGG
ATGTCTGACATCTGCGAGCACGTGTACTGCAGG
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