mRNA_P-littoralis_Contig1094.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1094.13.1
Unique NamemRNA_P-littoralis_Contig1094.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 7.170e-68
Identity = 117/153 (76.47%), Postives = 131/153 (85.62%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS RSKHIDVR+HFIR LFRSG IS++ V T EQHADVLTKA S+   +YHR+ LMNLPE
Sbjct:  230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 9.770e-67
Identity = 105/152 (69.08%), Postives = 125/152 (82.24%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 457
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP+ + S+ E+EYIAAGEGV+EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R    YHRKALMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.860e-66
Identity = 115/153 (75.16%), Postives = 132/153 (86.27%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   D+RSV+G+AT VGG VVSH S TQ I+S SS E+EYIAAGEGV+EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPLSSGR+KHIDVR+HFI  LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.040e-66
Identity = 117/153 (76.47%), Postives = 132/153 (86.27%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+   +YHR+ LMNLPE
Sbjct:  445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 6.980e-66
Identity = 112/152 (73.68%), Postives = 128/152 (84.21%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 457
            YVDASYAD    RRSV+GIA  VGG VVSH S TQ IVS S++E+EYIAAGEGV+EALFVR VLSFIAPETSG+ IKVLEDN+GA++L+QNP SS RSKHIDVRFHFIRELF+SG ISVE++ T+EQHAD+LTKAL R     HR ALMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
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BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5JQH8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.650e-65
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRS+SG+AT VGG VVSH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSF+APE SGS+I+VLE N+GA+AL+QNPLSSGR+KHIDVRFHFIR LFR G I+V+ V T EQHAD+LTK LSR   +YHR+ LM LPE
Sbjct:  101 YVDASYADTK-DRRSMSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRDVLSFVAPEPSGSSIQVLEGNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRPGDIAVKFVPTTEQHADLLTKGLSRASLQYHRRKLMILPE 252
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 6.730e-65
Identity = 114/153 (74.51%), Postives = 132/153 (86.27%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S+TQ IVS SS E+EYIAAGEGV+EALFVR VLSF+ PETSGS+I+VL+DN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  352 YVDASYADTE-DRRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 503
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 9.630e-65
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ IVS S+ E+EYIAA +GV+EALFVR V SF+ PETSGS+I+VLEDN+GA+AL+QNPLSSGR+KHIDVRFHFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+   NLPE
Sbjct:  107 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNLPE 258
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 1.900e-64
Identity = 118/153 (77.12%), Postives = 133/153 (86.93%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ +VS SS E+EYIAAGEGV+EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPLSSGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  704 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSMVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 855
[Close]
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 2.610e-64
Identity = 118/153 (77.12%), Postives = 133/153 (86.93%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSF+APETSGS+I+VLEDN+GA+AL+QNPLSSGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  703 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1094.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L589_9PHAE7.170e-6876.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE9.770e-6769.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE1.860e-6675.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE4.040e-6676.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE6.980e-6673.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQH8_9PHAE5.650e-6573.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQ05_9PHAE6.730e-6574.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPN5_9PHAE9.630e-6573.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU90_9PHAE1.900e-6477.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGN1_9PHAE2.610e-6477.12Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1094contigP-littoralis_Contig1094:49341..49839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size499
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.99e-22
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size399
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789421.924376-UTR-P-littoralis_Contig1094:49340..494041680789421.924376-UTR-P-littoralis_Contig1094:49340..49404Pylaiella littoralis U1_48UTRP-littoralis_Contig1094 49341..49404 +
1680789421.9427323-UTR-P-littoralis_Contig1094:49803..498391680789421.9427323-UTR-P-littoralis_Contig1094:49803..49839Pylaiella littoralis U1_48UTRP-littoralis_Contig1094 49804..49839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789421.9342077-CDS-P-littoralis_Contig1094:49404..498031680789421.9342077-CDS-P-littoralis_Contig1094:49404..49803Pylaiella littoralis U1_48CDSP-littoralis_Contig1094 49405..49803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1094.13.1prot_P-littoralis_Contig1094.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1094 49405..49803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1094.13.1

>prot_P-littoralis_Contig1094.13.1 ID=prot_P-littoralis_Contig1094.13.1|Name=mRNA_P-littoralis_Contig1094.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPET
SGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVISVEH
VRTEEQHADVLTKALSRDLFRYHRKALMNLPE*
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mRNA from alignment at P-littoralis_Contig1094:49341..49839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1094.13.1 ID=mRNA_P-littoralis_Contig1094.13.1|Name=mRNA_P-littoralis_Contig1094.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig1094:49341..49839+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGCTGATAGACGTTCGGTCT
CCGGGATAGCAACCATGGTCGGTGGGGCTGTTGTCAGCCACAAAAGTTCA
ACGCAGCCGATAGTTTCGAACTCCTCAGCAGAGTCAGAGTACATTGCGGC
TGGGGAGGGCGTGAGAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTA
TTGCGCCGGAGACGAGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAG
GGGGCTATGGCGCTGATTCAAAACCCTCTCAGCTCTGGCCGTAGCAAACA
CATAGACGTGCGCTTCCATTTTATTCGGGAGTTGTTTAGATCGGGGGTCA
TCTCGGTCGAGCACGTCAGGACGGAGGAACAGCACGCCGACGTTCTCACC
AAGGCGCTGAGCCGGGACTTGTTCCGGTACCACCGGAAAGCATTGATGAA
TTTGCCGGAGTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1094:49341..49839+

>mRNA_P-littoralis_Contig1094.13.1 ID=mRNA_P-littoralis_Contig1094.13.1|Name=mRNA_P-littoralis_Contig1094.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1094:49341..49839+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTGTTGTCAGCCACAAAAGTTCAACGCAGCCGATAGT
TTCGAACTCCTCAGCAGAGTCAGAGTACATTGCGGCTGGGGAGGGCGTGA
GAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTATTGCGCCGGAGACG
AGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAGGGGGCTATGGCGCT
GATTCAAAACCCTCTCAGCTCTGGCCGTAGCAAACACATAGACGTGCGCT
TCCATTTTATTCGGGAGTTGTTTAGATCGGGGGTCATCTCGGTCGAGCAC
GTCAGGACGGAGGAACAGCACGCCGACGTTCTCACCAAGGCGCTGAGCCG
GGACTTGTTCCGGTACCACCGGAAAGCATTGATGAATTTGCCGGAGTAG
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