mRNA_P-littoralis_Contig1089.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1089.1.1
Unique NamemRNA_P-littoralis_Contig1089.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1089.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1089contigP-littoralis_Contig1089:22983..23477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.9758136-CDS-P-littoralis_Contig1089:22982..231141680789413.9758136-CDS-P-littoralis_Contig1089:22982..23114Pylaiella littoralis U1_48CDSP-littoralis_Contig1089 22983..23114 -
1680789413.9854264-CDS-P-littoralis_Contig1089:23348..234771680789413.9854264-CDS-P-littoralis_Contig1089:23348..23477Pylaiella littoralis U1_48CDSP-littoralis_Contig1089 23349..23477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1089.1.1prot_P-littoralis_Contig1089.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1089 22983..23477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1089.1.1

>prot_P-littoralis_Contig1089.1.1 ID=prot_P-littoralis_Contig1089.1.1|Name=mRNA_P-littoralis_Contig1089.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
GNGDPTHIVGDRDVSCAYRMLEMGRVVKWFTAHGRHESLIHQKFRYLPIG
FGGYEILKGLPHTAFIDAAKHQLNILETCPVGETGR*
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mRNA from alignment at P-littoralis_Contig1089:22983..23477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1089.1.1 ID=mRNA_P-littoralis_Contig1089.1.1|Name=mRNA_P-littoralis_Contig1089.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig1089:22983..23477- (Pylaiella littoralis U1_48)
GGGAACGGAGACCCGACTCACATAGTTGGCGACCGGGACGTGTCTTGCGC
GTACCGAATGCTGGAGATGGGCAGGGTGGTGAAGTGGTTCACCGCGCACG
GGCGCCACGAATCCCTCATCCACCAAAAGGTGTCAGAATATTTCACTCTA
TCGTTCGTTGTGTTTATAGCTTGTCTTAGGGTCACTCAATCGCTATTGTT
GTTTTTGTTGCTGGTTTGACGCCATGATATTCTTGTTTTTCTCTTCGTCC
CGGTCGTCGTCGTCGTCGCGTCGTTTGTTGTCGTTGCTGCTAGTCTTACG
CTTGCGTTTATTTCCTCGTTTTCATTTTGTGTGTTTTACTTCTTTTTCAT
TCGGTCTGATCAGTTTCGCTACCTGCCAATCGGGTTTGGGGGCTACGAAA
TCTTGAAGGGCCTTCCTCACACCGCCTTCATCGATGCCGCCAAGCACCAG
CTTAACATCCTGGAAACTTGCCCAGTCGGCGAAACCGGAAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1089:22983..23477-

>mRNA_P-littoralis_Contig1089.1.1 ID=mRNA_P-littoralis_Contig1089.1.1|Name=mRNA_P-littoralis_Contig1089.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1089:22983..23477- (Pylaiella littoralis U1_48)
GGGAACGGAGACCCGACTCACATAGTTGGCGACCGGGACGTGTCTTGCGC
GTACCGAATGCTGGAGATGGGCAGGGTGGTGAAGTGGTTCACCGCGCACG
GGCGCCACGAATCCCTCATCCACCAAAAGTTTCGCTACCTGCCAATCGGG
TTTGGGGGCTACGAAATCTTGAAGGGCCTTCCTCACACCGCCTTCATCGA
TGCCGCCAAGCACCAGCTTAACATCCTGGAAACTTGCCCAGTCGGCGAAA
CCGGAAGGTGA
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