mRNA_P-littoralis_Contig1087.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1087.4.1
Unique NamemRNA_P-littoralis_Contig1087.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1087.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1087contigP-littoralis_Contig1087:46412..53479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size232
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.8330874-UTR-P-littoralis_Contig1087:46411..464651680789413.8330874-UTR-P-littoralis_Contig1087:46411..46465Pylaiella littoralis U1_48UTRP-littoralis_Contig1087 46412..46465 -
1680789413.8764377-UTR-P-littoralis_Contig1087:53466..534791680789413.8764377-UTR-P-littoralis_Contig1087:53466..53479Pylaiella littoralis U1_48UTRP-littoralis_Contig1087 53467..53479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.8443959-CDS-P-littoralis_Contig1087:46465..466031680789413.8443959-CDS-P-littoralis_Contig1087:46465..46603Pylaiella littoralis U1_48CDSP-littoralis_Contig1087 46466..46603 -
1680789413.8593152-CDS-P-littoralis_Contig1087:53439..534661680789413.8593152-CDS-P-littoralis_Contig1087:53439..53466Pylaiella littoralis U1_48CDSP-littoralis_Contig1087 53440..53466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1087.4.1prot_P-littoralis_Contig1087.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1087 46466..53466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1087.4.1

>prot_P-littoralis_Contig1087.4.1 ID=prot_P-littoralis_Contig1087.4.1|Name=mRNA_P-littoralis_Contig1087.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MVGEFSSTRCRLYFDVAGGSHFWKEEALFVLCEIRKFTHDPPFYLVWFMG
YNNE*
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mRNA from alignment at P-littoralis_Contig1087:46412..53479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1087.4.1 ID=mRNA_P-littoralis_Contig1087.4.1|Name=mRNA_P-littoralis_Contig1087.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7068bp|location=Sequence derived from alignment at P-littoralis_Contig1087:46412..53479- (Pylaiella littoralis U1_48)
ACTTGGAAAATTGATGGTTGGTGAGTTTTCTAGTACTAGAGTGTTTGCGC
AAAAGGATTTATTATCTCAAATATCCTTTCTTGAAAAAAAAAAATAATAA
GCGCGGTGAATAAGAATTCCATTTGAATAAAATTTGAAAATGAGTTTGCG
CAAAAGGAATTCTTTTCTGGGGTCCCAACACGTTGAAAAGGTTGGGGTAC
CCTGTATTTCAAATTGCGCAACCACCTGTTGCCTGCGCGCGAGAAAGAAG
CTCCGAAACTCATCACGAACTACTGCTCCTGTAGGTCACCACCATGAGTA
TGCAGGCTGTCGGTGTAGTGGACTGTACCGATGTTGTTGCCGAAGGGAAC
GCAAAGCTGGGAGTCGTCGCTGCAGGGGCGGGGCAAGGAGGGGATGACGA
TCCATCACAGACGCCAGCGGCGCTCGCAGCTACTGCTGCTGCGTCAATCC
AAGAGGGCGCACAGGGCAACAAGAAGAGCGGTGCGGCCAACACCGGGCCG
AAAAGGAAGTACGTTCAATGGACCTCCGACATGGAGTACGCCCTGATGGC
ACAGGTGGTTTTGATTCTATTACACATGGCCGTAGCCCGTGGCCCATATT
CGTGGGATTCATGGCCGGTCGCCAGAGTTCAAATCTCAAAACCAGCAGCA
AGCGTATACTACTTCCTGCTGTACTAAATAAGTGTGTAGTACACATAGGC
TATGACACAGGAACGGTATGCCGTGAACACACTGCTTCAAATGTCTGGGG
AACCATACGCGCGGACAACAGTAAACTGCTGTACACTACGAAGCAGCAGT
ATAAATTCGGGATAAATTCTGTGCACACATCACACAGCATTTCAAATGAT
GTGTGGAGATTTCGTATGATATGGTACAACATGTTTCTTCGTTATTTCTG
ATCAAACACTTGTCTCGTGCTGCCATAAACAGAACGCACCTGTCAACAAC
ACCACACACGATACACATCAGCTTGCTTTCAAACATGTGTGTTCGTTCTG
AAATATTCTACCGTCATATACTATTGATGGTCACTACGGCTGCTGTACAG
CAGCGGCATGAAGTGTGCACACATGATATTTTCAGTACAGCAAGTTATTT
TGCATGCACGCTGGGGGCACACGTGCCATGGAGTGTAATGAAAATTCGGC
ACCACACCTACCTGCCATCAACACCACACACGCAACAGATGAGTGTGCTT
TGAAACACTTGGGTTTGTTCCCACATGTACTGCCGTCGTGCGCGATTGAT
GGTCACTACGCCTGCTGTACAGCAACAGTATGAAAGCGCGACACACGCTA
CAGATGTGGGCGTTTTGAAAAGCGTGTGTTTGCCACAAGGATGTCGAATA
TGCTGCCGTCACGCGCAACCCATTTATCGGCGCGTCAACGGTCACAACCC
ACCACCACCACCACCAACACCAACACCACCAAACTCCCCTTGCCTCCGTG
CGCCCCTGTGCGGTTCCACTTCCCTGGCAAAATGAAGGCGCACGCGGATC
AGGTGCACACCGCACCGCATGGGCAGAAGGGGAAGAGGCTCGAAATTCTC
GGGAAGACGCTGAATTCGCTCGACTTGTTCATCGCAGTCGGTGGCGTGAG
GCAGTCGAAGATAGAGGAGATGTACAGGAAGCTCATGGCAGATTATCGGG
AGAAGGTTGACAAGGGAGAGTGGACGAGCGGGGAACGTGAAGGCCAACTA
AGCCCCGTCCAGTACTTGTGCAACGAGATAATGAAAGAGGAGGACGTGTT
CTTCGCCTGCAAGACTGCCAAAACCGAAGAAGCACAACAGGAGCTCGCGA
GGAAAGAGGCCAAGGGGCAGGAGGTCAGACACGAATTTCACACCTCACTA
TTGGCGGCTTTGAGACGGTCCAGCGTCCTAGGTTTATGCCCGAGCGCGAT
GTACCTCGAATCATAGGGCTGTCGCCTTTGGAGATGAAATACTCAACCCC
CACACGACCATATTCTGCCGTGGTAAAAAGAGAGTTGACTACTGAACCCC
AGGGTGTGTCCTTGTCAATTTCCTAGTCACCAATCCCCATCAATCGCGCC
TGTGCTGCACTTCGTACCACCACCACCACCACCACCACCCCTGCCCCCAC
CCCAACATAGGTGTTGGACATGACCCTTCAACCGAGCGGTTCTCGCGAGC
GCAAGAAGCGTCGCGGAACTGGAAAGGAGGGCAGCTCTCAGGGAGGGTCT
CCCGAGGGAACCCCTGGTCCTGCCATAGATCTCGACGCTTCTCTCGTGAA
GTTCCTCAAATCCCAGACGGACGACCCAGAGACAAAGAACCACAAACTTC
AGCTTAAGGAAGAGGAGCTTGCGATTCAGAAAATGGAGGCCGAAGCCGCG
TTGCTGCAGGCGAAGGCTTTGAGGGATGTAGCAGTAGGCAGTCCTGCAAC
AAAGAAACGCCGAGAGGACCGTGAGATGTTGGACGCTGAGACGCGCAAGC
AGCTGGCGGAGAATCAAAGGATGCAGCTGCAGTATCAGTCTGAACAGGCC
GCACAGTCGGCTAAGATGAATCTTGGCGTCTTAGCAGTCTTGGAGAAATT
TGCGAAGGGTTGAATTTGCGCCTATCGCGGTCGTGCATTACCATAATTGT
TGGATGCAGCGGCAAAGAATCTGTCGCACACGGCGCAAGCTGGCGGAAGG
TGGGTGGGTGGGTGGGTGGGGGAGGCAGAATAAGGGTGACGGGAAGCATC
GTCCGTTACCTATCGACTTGTATGAGGACCATTGTTTTTCATTTTGTTTT
TTTGTCGAATTGTCCCTTTCCACAACACAAAAAATAAAACACCAAGCCTG
TGTGCCTTGATCGTATGGTGAGGTTTGTGCTATTAGCGGTAGTAGTACAA
CTTCACTTGCGTGTGCTGTAGTGGTAAAAGGAATTGCCGCACACAGCGTA
GGATGAGGGTGCGGAAGAAGGGTAACGGGAAGCAGCGTTGTTGTTTTTTT
TCCGACGTGCTGTTGGCCTTCTTGTTGCATGTGTGTATTCGCCATGTTCT
TGCTTTGCACAACACTTAATAAAAAACTTCGGTGCCTTTTTCGCAGTGTT
AATTTCGTGCTTGCCCCAGCGGTAGAGACAGGCCTACTTGCGTGTGCTGC
AGTGGCAAAGAAATTGTCGCACGCAGCGTGCACTGGCGAGAGCAGCAGGA
AGGGGGGAGGAGGGGGGGGGCAGAAGAAGGGTTACGGGAAGCAGCGTTGT
TTTTTTTGTTCAACGTGTTGTTGGCCTTCTTGTTGCATGTGTGTATTCGC
CATGTTCTTGCTTTGCACAACACTTAATAAAAAACTTCGGTGCCTTTTTC
GCAGTGTTAATTTCGTGCTTGCCCCAGCGGTAGAGACAGGCCTACTTGCG
TGTGCTGCAGTGGCAAAGAAATTGTCGCACGCAGCGTGCGCTGGCGAGAG
CAGCAGGAAGGGGGGAGGAGGGGGGGGGCAGAAGAAGGGTTACGGGAAGC
AGCGTTGTTTTTTTTGTTCAACGTGTTGTTGGCCTTCTTGTTGCATTTGT
GTATTCGCCATGTTCTTGCTTTGCACAACACTTAATAAAAAACTTCGGTG
CCTTTTTCGCAGTGTTAATTTCGTGCTTGCCCCAGCGGTAGTACAGGCTC
ACGCTTATGTGCTTTGGGGGCAACGTACTTAATTGTCGCACGAAATCGTC
GCACACAGCTTAAGCAGGAGGAAGGGGGGGTTGTCTCGAAAGGGTGACGG
CAACCAGCGTTCGTTGCTATCGACGCGAGGCAAGGCCTCCAAAGTGCATG
CGTTTTTCGTCTGATGATTGCCTCGCAAAACACAACAAAAATCACCCGAT
CCTTTGAGCTTTTCAAATCGGCAAACACGGGGTCACCATCAATTATCAGG
TAATTTCACGCCCCCAAAAAATCATGGTTGTGTTTCCCCTACTGCAGTAA
AACTTAACCCAAGGATCAGAAAACGGGTTGAAAATACATGCGCGATATTC
GGGCCCTCCGAACGTGTACATCTAGACCTGCACCATTACACTGGGCGTTG
ACCTGCAACATTTTCGTCGTAATCGCAGTGTAACAATCCACCGTGAATGA
CCTACGAGTGCAACACCGGCCTGCGAAAGCATAAATTAATCATGTCGAGG
GTGACGGCGCAATCACAGCACCATCACATCAACGAGAGGGATGAACTGCA
TTTAAAAGAAAAGAAAACGACAAGCAACCCAACGACACTGGTCTCACGCT
CGTCCTGATGCATGGAAGCATGCAACGTACCGAAACCACATTTGCGGAAT
GACCCGGGTGTCTACTGCCGCACTAGTAACTCTTTTAGAACGCGAAGTAC
GCCTCCAGTGACGGAGCGGACATGTCGAAGTATTCGCCCGTGATGCTCCC
GAAGAGGCAAGTGTGCGCGTTAGTGAGCAGCACCGCTACGGCGTAGTACT
TCGCGACCGCCTGTAGCTTTATCTTCAGGTTCTGCTTGAAGTCGACGTAC
GGAAAAAGTGCAACGATCTTCCCGAACTGCCATTCGACGGAGACCCTGAC
CTTCGAGAGCTCCCTGTTGTAGGTCTTCTGCGCGACCGTCAGGTTCGCGC
CGCGGAAACCCCGGTCGACGTGGGAGCTGACGGGATACGCCGCGTCTCCG
TACACCTTGAACTGGACGGGATTCCCTGCCTGCACTGCCGCGAGTCTACC
GTTCAAGCCGCTTCTGCTTAGCAACAGGGCATCGTTCCGTCGCCCCATTT
CTGGTCCCCAAATCTCCAGCATCCCATCTGCAAACACAACAGACTGCCAA
GCGAGGCCATGAGCGCAGTGGTGGCCGTCGTACATTTGCTCCTGCAGCGC
GGGATCTCCCCCTGGGCGGCAGTTCCTCCTGAGCGTACCGTCGATGAACC
CGATGAAGTTGCCGCCCTCGCACGCCATCCCACCTTGGGCACCAACAACA
AGGTGGAGGGAATCGAGGGTACAAACAAAGCCAGGTTATCGGCCAATCAA
GCGGAAGGTTTCGCGAGTAAAAGATCGTATTTTGGTATTTTTACACCCGT
GCCAACTCCACAGAGTGGTCTCCGCGGCATTATCGCCGTCGTACCGCGTC
GTACGAAAGGCCACAGCCCTACAAAAAAAAACTTCAGCCATGCTACATAG
CGCTGGCCAAGCACTTTTGCACACACAGCTCACCTTTCGCCTCGATCTTC
TTGCACATCGTTGGAAAGCGGGGAAAGAAGAACTCAAGATTGTGCGTCAC
CCTGTGCAGGTGGTTTTCGTACACCCAGTCGATGACAACGTTGAAAATTC
GCGACAACTGCGTGTACTCTCGGCCGAATTCCACCTGTAAGTCATGCCAC
CGCCCAGGATACCTGAGGTGGAGCACGCCACAGGTGAAGGGAAACACGAA
GCGAGAGGTAAACAAAAGCTACCATTTTCGTGCGCCTCGAAGTCGGGCGT
TTCCGGCAAAAAAATAGTAAGAAGTGCGGGCTTTTACTGCTGTTTGTTTG
ACACGAAATGCATCCATGCGACTGCTGTACGAGTATATGAGTAGGGTTGC
ATGTGTCGAATCGCTTCAAATGAGGTATGCAATACAAAATCACCGGCGAC
ATGCCTTTGGTAGGTTACCATGGGTTACCAATGAAGTTATTATAGAATGA
GGGCTGTGCACTCTGTGTACGCCCCAGTATTGCCGTGCGTTCTATGCGTT
ATACTCGAGTAGTATTTTGCAGACGTTACTGCTGTACCACGCGTTTTTTT
TAAGCGCAATCGCATTTTGGAGACCAGGGAAAAGTAGCGTGACCAGGGAA
ACCTTCGTGTTGCAAGGCGGGCTACTGCTGTACCAGAACGTTGTACGAGA
AGGGCAGCTGCAGCGTACGTGGTATGATATGAAACGACGGCAGCTTTACC
TGTACATTTGTGTCATATGATCATGACTTTGTCTTCATCAAAGTACACGA
CTCGTGTTTCAACGCGATCAAATCATGTGCCGCTATTTACTTCGTATTGT
TTGTGTGTTGTCATCCCTTTAGTTATACAGCAGTATATATGCACGACTGC
TGTATAACTGTACTCTACACAGCTGTACAATTCGAGTTTATGAGCTGAGG
CGTGGATGTTGTAACGGCACGCTGTCGAGTGTGACCTGTACAACGAACAC
TTTGTCTACTGGACGGCATAGAACACAGCTTACCTCATGCGCCTAATGAG
AAGGAGGAAGGCGCTCTCGCTGGGGTAGCGGCCGCGATTGACCGGGCGAA
CCCACTCCGGGAAATTGAACGCCCGGAACAAACGTCGTAGCTCCGGCTTT
CGGCTCCGGTAGTTTGTCCACCCTTCGTTGTCGGTGATGCCGTCGATGAC
AGGTGTCCTCCCCCGGATGGTCGGAGGGAGAATCGTCCTATCGTGCCTCA
TACGACACGCGCGACCGACGAGAACGACACCAAGGTCCCTCAACTTCCGT
GCCTGCTCCTCATCTGCCTCGTGTGCCGAAGCGTTGAACAAGGCCAGCGC
CTGCCGCTTCAACTGCCTGATCCGCACTCGCTCACCAGCGCAAAGTGCGC
CATAGCGCCGATTGATTTGAACATCTCTGACGTTGGGTCGTCCTGTCGTT
TCCATCGTCTAGTCTTGCTAGCGCCTACGCATGGCTCTCCTCGTAGTCTT
GCCAGCAGAGAGGGGTGGCAGCGTAGCAGCATGCCCTCAGCCGCGGCATG
GCTCGGGAATGATGCCGGGATTAGTTGGCCAATCAGGTGATGTGCCGACA
TGGGCTCGCTTGGCAGATCAAATATTCTTTCCAAATATCCTTTCTTTCCG
GGATTTTCCGGAATTTGAGAAAATAAATCCTTTCTGTTGCAGTCACGGAG
CCTCTCGGGGAAACCTCGGGGGAACCAAGAAAGGACATTTGAGATAATAA
ATCCTTTTGCGCAAACACTCTACTAGTGCCGTTTGTATTTCGATGTCGCA
GGAGGGAGTCATTTCTGGAAAGAAGAGGCGTTGTTTGTATTATGTGAAAT
TCGGAAATTCACACATGATCCGCCGTTTTACCTGGTGTGGTTCATGGGAT
ATAACAATGAGTGATTTAATGTTTCGTAGATATTGGGGTGCAGCGTAGAA
ATGTTTTGATGTGCCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1087:46412..53479-

>mRNA_P-littoralis_Contig1087.4.1 ID=mRNA_P-littoralis_Contig1087.4.1|Name=mRNA_P-littoralis_Contig1087.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1087:46412..53479- (Pylaiella littoralis U1_48)
ATGGTTGGTGAGTTTTCTAGTACTAGATGCCGTTTGTATTTCGATGTCGC
AGGAGGGAGTCATTTCTGGAAAGAAGAGGCGTTGTTTGTATTATGTGAAA
TTCGGAAATTCACACATGATCCGCCGTTTTACCTGGTGTGGTTCATGGGA
TATAACAATGAGTGA
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