mRNA_P-littoralis_Contig1086.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1086.6.1
Unique NamemRNA_P-littoralis_Contig1086.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1086.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1086contigP-littoralis_Contig1086:19078..21186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size545
Hectar predicted targeting categoryother localisation
Exons4
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.5384183-CDS-P-littoralis_Contig1086:19079..192871680789413.5384183-CDS-P-littoralis_Contig1086:19079..19287Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 19080..19287 -
1680789413.5504756-CDS-P-littoralis_Contig1086:20287..204101680789413.5504756-CDS-P-littoralis_Contig1086:20287..20410Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 20288..20410 -
1680789413.562509-CDS-P-littoralis_Contig1086:20679..208131680789413.562509-CDS-P-littoralis_Contig1086:20679..20813Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 20680..20813 -
1680789413.5720203-CDS-P-littoralis_Contig1086:21108..211861680789413.5720203-CDS-P-littoralis_Contig1086:21108..21186Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 21109..21186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1086.6.1prot_P-littoralis_Contig1086.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1086 19080..21186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1086.6.1

>prot_P-littoralis_Contig1086.6.1 ID=prot_P-littoralis_Contig1086.6.1|Name=mRNA_P-littoralis_Contig1086.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
LAGHLLVGSCFVEEYWSPWTVRLMDEYPWIERASFIFSRMLFINTITIVL
KFALRGILALKKWLQSNRTVSTVRETKHQKLLREQRQQANGDLTRLRDQL
KADLKAVRQAKKFEDTGLACTAAIRSLISMINHIKYRGDENGSTVVKRTD
RQLKVKLYTQRAAAHVELGRYHSAADDYVRV
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mRNA from alignment at P-littoralis_Contig1086:19078..21186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1086.6.1 ID=mRNA_P-littoralis_Contig1086.6.1|Name=mRNA_P-littoralis_Contig1086.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2109bp|location=Sequence derived from alignment at P-littoralis_Contig1086:19078..21186- (Pylaiella littoralis U1_48)
CTGGCCGGTCACCTGCTCGTGGGGTCATGTTTCGTTGAGGAGTACTGGAG
TCCATGGACGGTTCGACTGATGGATGAGGTACACGTGCAGCGCATGACAT
ACACATTCTTCCACCGTTTTCCGGGAATATATTTCATGGCTTCACGGGTC
TTTTATGTCGGGGTTGTGCGATACCAAACATCTGTTTTGGCATGTAATCT
GTACGTGTTCGCTCCTTTCCGCATCCTGATACATCGGCATTAGCGCCGAA
AGAAGCCGTGAAGTTTGAAGTGCGCGAGGAGCTTTCGCTAGCAACATCTT
CAGGGCTTTTACAGCTTATGTTGTAGAGCTCAAAAGCGTGCAACCTGTGC
GCGTCATTGTCGACCACTGGCAGTATCCTTGGATTGAGAGGGCTTCCTTC
ATCTTCTCCCGGATGCTTTTCATCAACACCATCACGATTGTTTTAAAATT
CGCTTTGAGGGGCATACTGGCACTGAAGAAGTGGCTTCAGAGCAATCGCA
CAGTCAGGTATGTTTGACCGCGCATGCCGATCGAGATGAATGGCGATATG
CGCTCAGTAATTATCAGTTCAATAGTAGACTAGAAACTGTTTTGTCGTCT
GACTTGAGCCGTCGGCCATGTTGTCGCAATGTTCCGTGCTGATGATGAGC
AGGCCACATCAACACGTGCGTATGGGCACCATGTGATTAACACGGGTAGA
TAGACTCAAGTATAGTGCGCCGTCTTGACTCGTCACCGAGTGGCTGAGGG
TATTTGCTTTAACCTCTTATCTGCAGCACGGTGAGGGAGACAAAACATCA
AAAGTTGCTTCGGGAGCAGCGGCAGCAGGCCAACGGAGATCTCACACGCC
TTCGCGACCAGCTTAAGGCGGACTTAAAGGCTGTCCGTCAAGCCAAGAAG
TGAGGATGTTTTCATGGGTGCTGTATCATATCGGTAATTTTCGGCACTTT
CTGTCGGGATTCAGAGCAATCCCATATTATTTATTGTTGAAATATTTTCT
GATTTTTGAAGCATTGAATCAACTGCCGCTCTTCTGAACGTCCAAACACC
GCAAGCAATGTGCCGGTGGCAAGACAGAGGGGGCTATGGAAGTTTGTAGG
ACAAAAAAACTTACAATGTGATGGCTTGTGAATGGGAACCTTAATTGGTG
GTTGTCGCTCTATTTTACGAGACACGTTTCGGGGAGCACGTTTTTAGTCT
TGGGCTTAACATGCTTTTTACAGAGAGAAAAAGCTATTGTAGTGCAACCT
GAGCAAACCGAGTGAACATGAAAGAGGCTCAGCAAAACGTGCAGCTTGTA
TGGAGAAAACGGGAAAACGCACTCAGTCCACTACCCCACAATTTGCATTG
GTTTATTTCTCAAAATGCCCATCCCGTAGCGATGACTGCGCTGATGGATT
CAGAGCGTTCCGCGGGAGCTACACTCATAGCTTTTGAAATTTTTGCACCC
GGTGATCCATGTAGACGAAATGCGCGCTGAAAAAATCGATTTATTTCGTG
GCACGGGTAGGGGAACTGGTGGGGATTTCAACTTCGAACAAGCTGTACGC
AAGTTGCTTCCGACGCGCTGCCAATATTCTTGCTGTACACGCTGGGCCAC
AATGGATGTTTGTAGAGAATGAGATTGATACGTTTTCTTTTTCACCGAAA
CTCAGGAGGCTGTCTGAACAGCTGTTACCATCTGTCATAGCTCGTGAGTC
CCACCTCCGACTGATGACCAACTTTGGAACACCAGTGCGGCAACGCACGC
GCGCATTTGTTTGAATATTGAATATTCTAGCAAACAAGCAGGCTCTTGTC
ACCGTGGGCCCCCTAAAAAGCACCGTGCGGCGTAACCAATCCATGGCACA
CGACAGCAGAACCCTCGAAACTCGCACATTATGCGTCACAACCATTCAGG
TTCGAAGATACGGGGCTGGCGTGCACGGCCGCAATTCGTTCGCTGATATC
CATGATTAATCACATCAAGTACCGAGGCGACGAGAACGGGAGCACGGTAG
TGAAACGTACTGACAGACAGCTCAAGGTGAAGCTGTACACCCAACGAGCA
GCCGCTCATGTCGAACTCGGAAGATACCACAGTGCCGCCGACGACTACGT
GCGTGTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1086:19078..21186-

>mRNA_P-littoralis_Contig1086.6.1 ID=mRNA_P-littoralis_Contig1086.6.1|Name=mRNA_P-littoralis_Contig1086.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig1086:19078..21186- (Pylaiella littoralis U1_48)
CTGGCCGGTCACCTGCTCGTGGGGTCATGTTTCGTTGAGGAGTACTGGAG
TCCATGGACGGTTCGACTGATGGATGAGTATCCTTGGATTGAGAGGGCTT
CCTTCATCTTCTCCCGGATGCTTTTCATCAACACCATCACGATTGTTTTA
AAATTCGCTTTGAGGGGCATACTGGCACTGAAGAAGTGGCTTCAGAGCAA
TCGCACAGTCAGCACGGTGAGGGAGACAAAACATCAAAAGTTGCTTCGGG
AGCAGCGGCAGCAGGCCAACGGAGATCTCACACGCCTTCGCGACCAGCTT
AAGGCGGACTTAAAGGCTGTCCGTCAAGCCAAGAAGTTCGAAGATACGGG
GCTGGCGTGCACGGCCGCAATTCGTTCGCTGATATCCATGATTAATCACA
TCAAGTACCGAGGCGACGAGAACGGGAGCACGGTAGTGAAACGTACTGAC
AGACAGCTCAAGGTGAAGCTGTACACCCAACGAGCAGCCGCTCATGTCGA
ACTCGGAAGATACCACAGTGCCGCCGACGACTACGTGCGTGTG
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