mRNA_P-littoralis_Contig1086.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1086.5.1
Unique NamemRNA_P-littoralis_Contig1086.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1086.5.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.080e-10
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    7 RAALDRFAKGGGPPWKYIDAMHVSLKEGYCKALRNSGTSSDLIESLAVACELRLAWATDLARPEQ 201
            R  L  +A+GGGPP   I AMH SL+EGYCKALRN+G +    E+LA A    + WA  + R  Q
Sbjct:   76 RNNLAGYAEGGGPPELCIAAMHASLQEGYCKALRNAGQTDKFKEALAAATGTGVPWAMSMTRRRQ 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1086.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI4.080e-1049.23Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1086contigP-littoralis_Contig1086:15759..16524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5Y3
PFAMsDnaJ,TPR_2,TPR_8
Model size262
Max annot lvl2759|Eukaryota
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.69e-11
EggNOG OGsCOG0484@1|root,KOG0550@2759|Eukaryota,KOG0713@2759|Eukaryota
Descriptionprotein folding
Cds size258
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.485054-CDS-P-littoralis_Contig1086:15760..157931680789413.485054-CDS-P-littoralis_Contig1086:15760..15793Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 15761..15793 -
1680789413.4951327-CDS-P-littoralis_Contig1086:15968..160861680789413.4951327-CDS-P-littoralis_Contig1086:15968..16086Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 15969..16086 -
1680789413.5076733-CDS-P-littoralis_Contig1086:16417..165241680789413.5076733-CDS-P-littoralis_Contig1086:16417..16524Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 16418..16524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1086.5.1prot_P-littoralis_Contig1086.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1086 15761..16524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1086.5.1

>prot_P-littoralis_Contig1086.5.1 ID=prot_P-littoralis_Contig1086.5.1|Name=mRNA_P-littoralis_Contig1086.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
ERRAALDRFAKGGGPPWKYIDAMHVSLKEGYCKALRNSGTSSDLIESLAV
ACELRLAWATDLARPEQAQGTDQGQVALSSIHSQKI
back to top

mRNA from alignment at P-littoralis_Contig1086:15759..16524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1086.5.1 ID=mRNA_P-littoralis_Contig1086.5.1|Name=mRNA_P-littoralis_Contig1086.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=766bp|location=Sequence derived from alignment at P-littoralis_Contig1086:15759..16524- (Pylaiella littoralis U1_48)
GAGCGGCGCGCAGCGCTCGATCGGTTCGCAAAGGGAGGGGGGCCGCCTTG
GAAATACATCGATGCCATGCACGTGTCGCTGAAGGAGGGATACTGCAAGG
CTTTACGGTAAGAGGGTGCGACTGCTGTGTCCAAGAAATGATGACCCGTT
GAGGATAACGGACAATTTTCGACCAGATGTTTTACTTCGGGGCCTCTTAA
ATGTGTGCAACGTACCCGGCAGAGTTGTGATCATTGGTATCATACATGTT
TTAGGTAGTGCATAGTTCCATCCAACACCGCTAAAGATCCTATCGTTTAT
TCGACCCATGCAAGATCTCTGGACTGGGTGTGGATAGTACTGCGCGCAAT
CACCTGCCATTCGCTGGATCAACCTGAGTGTCAATTCCTGCTTCCCCACC
ACCCCTCACGAAACATTTTTTACCCACACGCTTGTTAGCAACTCCGGCAC
AAGTAGCGATCTCATCGAGAGTCTTGCGGTAGCTTGCGAGCTGCGCTTGG
CATGGGCGACGGACTTGGCGAGACCGGAACAAGCACAGGGCACCGACCAA
GGACAGGTAGAAGCACAGTCTGGGGGTAGAACTGTCTTTTGAACTCAAGC
GGAGAGGCTGTTCGTAGCTCATAGAGTTCCTCGGAAATTACTCTCTACAA
AATGAAATGGCATCATTGCCCGGTTCGTGTCGTTCTCCTTTCTTCTAACG
GTGTTAGATTTCACCCCTGCGCTCTCTATAGGTCGCCCTTTCGAGTATAC
ACTCGCAGAAGATCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1086:15759..16524-

>mRNA_P-littoralis_Contig1086.5.1 ID=mRNA_P-littoralis_Contig1086.5.1|Name=mRNA_P-littoralis_Contig1086.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1086:15759..16524- (Pylaiella littoralis U1_48)
GAGCGGCGCGCAGCGCTCGATCGGTTCGCAAAGGGAGGGGGGCCGCCTTG
GAAATACATCGATGCCATGCACGTGTCGCTGAAGGAGGGATACTGCAAGG
CTTTACGCAACTCCGGCACAAGTAGCGATCTCATCGAGAGTCTTGCGGTA
GCTTGCGAGCTGCGCTTGGCATGGGCGACGGACTTGGCGAGACCGGAACA
AGCACAGGGCACCGACCAAGGACAGGTCGCCCTTTCGAGTATACACTCGC
AGAAGATC
back to top