mRNA_P-littoralis_Contig1086.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1086.4.1
Unique NamemRNA_P-littoralis_Contig1086.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.190e-16
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  143 FPFVCGLVRPVFPSSTRDVAGRPCVPLELKVGVLGVLQVLGRGNCFADVANFSLMSQ 313
            F     LVR VFP++TRDVAGR CVPLELKV  LGVLQVLGRGNCFADVA  SLMS+
Sbjct:   83 FRHFVDLVRTVFPTATRDVAGRQCVPLELKV--LGVLQVLGRGNCFADVAQLSLMSR 137
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.990e-16
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  161 LVRPVFPSSTRDVAGRPCVPLELKVGVLGVLQVLGRGNCFADVANFSLMSQS 316
            +VRPVFP+   DV GR CVPLELKV  LGVLQVLGRGNCFADVANFSLMS++
Sbjct:  187 MVRPVFPAREHDVCGRLCVPLELKV--LGVLQVLGRGNCFADVANFSLMSRT 236
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5KEH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.530e-13
Identity = 38/53 (71.70%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:    3 RPRPQYHTSAWGARLALLESLRKDNRLHQNSREAKAFRSDFRVPYEFFLSFVD 161
            R RP Y +SAWG RLA LESLR   RL  +SREAKAFRSDFRVPYEF   FVD
Sbjct:   58 RERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRVPYEFSRHFVD 110
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5KHV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.260e-10
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  164 VRPVFPSSTRDVAGRPCVPLELKVGVLGVLQVLGRGNCFADVANFSLMSQS 316
            V  +F SS RDVAGR C P+ELKV  +G L+VL  G CF DVA+FSLMS++
Sbjct:    4 VTSIFQSSARDVAGRDCPPVELKV--MGTLKVLASGCCFQDVASFSLMSRT 52
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5KGV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.930e-10
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  140 VFPFVCGLVRPVFPSSTRDVAGRPCVPLELKVGVLGVLQVLGRGNCFADVANFSLMSQS 316
            +F  +   V  +F SS RDVAGR C P+ELKV  +G L+VL  G CF DVA+FSLMS++
Sbjct:  107 LFESIMQTVTSIFQSSARDVAGRDCPPVELKV--MGTLKVLASGCCFQDVASFSLMSRT 163
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.770e-5
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:  143 FPFVCGLV-----RPVFPSSTRDVAGRPCVPLELKVGVLGVLQVLGRGNCFADVANFSLMS 310
            +PF   LV     R  FP+  +D +GR  +P++LKV  L  LQ+L RGNCFAD+ + S +S
Sbjct:  124 YPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKV--LACLQILARGNCFADIYHMSFIS 182
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.420e-5
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 2 
Query:  143 FPFVCGLVRPV-----FPSSTRDVAGRPCVPLELKVGVLGVLQVLGRGNCFADVANFSLMS 310
            +PF   LV  V     FP+   DV GR  VP+ELKV  L  LQ+L RGN FAD+ + S +S
Sbjct:  140 YPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKV--LACLQILSRGNVFADIYHMSFIS 198
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BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.670e-5
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:  239 VLGVLQVLGRGNCFADVANFSLMSQS 316
            VLGVLQ LGRGNCFADVANFSLMS++
Sbjct:    6 VLGVLQALGRGNCFADVANFSLMSRT 31
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1086.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE1.190e-1675.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE1.990e-1678.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH6_9PHAE2.530e-1371.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV5_9PHAE2.260e-1060.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGV3_9PHAE4.930e-1054.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.770e-544.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.420e-547.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE4.670e-588.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1086contigP-littoralis_Contig1086:3854..5199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.3651843-UTR-P-littoralis_Contig1086:3853..39021680789413.3651843-UTR-P-littoralis_Contig1086:3853..3902Pylaiella littoralis U1_48UTRP-littoralis_Contig1086 3854..3902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789413.3849916-CDS-P-littoralis_Contig1086:3902..39311680789413.3849916-CDS-P-littoralis_Contig1086:3902..3931Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 3903..3931 -
1680789413.3998094-CDS-P-littoralis_Contig1086:4961..51991680789413.3998094-CDS-P-littoralis_Contig1086:4961..5199Pylaiella littoralis U1_48CDSP-littoralis_Contig1086 4962..5199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1086.4.1prot_P-littoralis_Contig1086.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1086 3903..5199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1086.4.1

>prot_P-littoralis_Contig1086.4.1 ID=prot_P-littoralis_Contig1086.4.1|Name=mRNA_P-littoralis_Contig1086.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
HGHARSTTRPPGARDWHCWKAFERTTVFTKIAVRQRRSGRTSVCHTSFSF
RLWTGEAGLPIFYKRRRWASLRPLGVEGGCAGGAAGIG*
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mRNA from alignment at P-littoralis_Contig1086:3854..5199-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1086.4.1 ID=mRNA_P-littoralis_Contig1086.4.1|Name=mRNA_P-littoralis_Contig1086.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1346bp|location=Sequence derived from alignment at P-littoralis_Contig1086:3854..5199- (Pylaiella littoralis U1_48)
CACGGCCACGCCCGCAGTACCACACGTCCGCCTGGGGCGCGCGATTGGCA
CTGTTGGAAAGCCTTCGAAAGGACAACCGTCTTCACCAAAATAGCCGTGA
GGCAAAGGCGTTCAGGTCGGACTTCCGTGTGCCATACGAGTTTTTCCTTT
CGTTTGTGGACTGGTGAGGCCGGTCTTCCCATCTTCTACAAGAGACGTCG
CTGGGCGTCCCTGCGTCCCCTTGGAGTTGAAGGTGGGTGCGATTGAGACT
GAAGCTTTGTCATGTTGGACTCGGCAGTCTCTTCTACATGTGAGTGCGTT
GGTGTGGATGTGTGTTCAAGGTCATGTCGCACATGGGAAAACAGCAGTAC
AGCATATTACCAGGTACCGGTATGTATCATATGATGATAAATCGTATACT
GCTACAAACTAATGATACGTGTGCAGACTGGGAAACCGCTCCGCATCAAC
AACAGCGCTACGATCTGTTTTCACAGCACTCCCTACAGCAGGTCCTGGTG
TCGACGCTACAGCAGTACCGTAGTATATTGCTGTACTCGTAGCACTCGCG
CCCACAGAAAAAACAGCACCATTATATGCGAATGTATGCGTACGTACGTA
GTACTTCGAAGTACGTAAACAACAGTCCACGCCACAGAGACATGTTGTAG
TGTCCCGGCCAAGGACTGCGTGTCAACAGCAGTACACCTCTACCACAGTT
GTCCCCGTTATTATCCACAGGCCTCGGTCTGTGGAAGTGCGTGTGGGATC
GAATTCGACGCGTAGCACCGCTGTAGACGCGCAGTCTATCAGACGTACAT
GATACTTCGAAGTATGAAAAATACAGCATACAGCAGTACGACGTTTGTAC
GAGTACGTGATACGCTGAGCGCAAGGAGGCATGTTTTTTTTTCCGTCGGC
TGCGTGTCGAAGCACAAGCTCGTGCCACTTTTTCTCCTCGTACTCATCGA
CGGACACCAGTCTGCTGAAGGGCGCGAGCTTGTATTTTGGTTAAGCTACT
GCTGTAAACGTGAACACGCAGTGGATGACACCGGAGATTAGGTTTGCGCC
AGCTACTTCTGTAGACACGATACCAGCAGTGGTAGATGCTCGTATGCCCG
TATAAAATCTAGTCGTACTGACTATGGTAGCGTTTTTCTGTTGAAATATA
ACCTCTGGATGAAGTGCAATCAAATGTTGCCGTCTTCGCAGCCGGCGTAT
CTAACGAATACCTCCATTACTTACCGCTGCCTCTGTAACACCTACTCTTG
GTTTGTCGAAATAAACAGGTGCTGGGGGTGCTGCAGGTATTGGGTAGAGG
CAACTGCTTCGCGGATGTTGCGAACTTTTCGCTGATGAGCCAATCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1086:3854..5199-

>mRNA_P-littoralis_Contig1086.4.1 ID=mRNA_P-littoralis_Contig1086.4.1|Name=mRNA_P-littoralis_Contig1086.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig1086:3854..5199- (Pylaiella littoralis U1_48)
CACGGCCACGCCCGCAGTACCACACGTCCGCCTGGGGCGCGCGATTGGCA
CTGTTGGAAAGCCTTCGAAAGGACAACCGTCTTCACCAAAATAGCCGTGA
GGCAAAGGCGTTCAGGTCGGACTTCCGTGTGCCATACGAGTTTTTCCTTT
CGTTTGTGGACTGGTGAGGCCGGTCTTCCCATCTTCTACAAGAGACGTCG
CTGGGCGTCCCTGCGTCCCCTTGGAGTTGAAGGTGGGTGTGCTGGGGGTG
CTGCAGGTATTGGGTAG
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