mRNA_P-littoralis_Contig1.288.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI) HSP 1 Score: 216 bits (551), Expect = 1.070e-53 Identity = 196/308 (63.64%), Postives = 220/308 (71.43%), Query Frame = 2
Query: 143 DAAAASLWKCPTCTMDNELVNDKCVVCSQRRPAAALPRGTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRQRRGVARVNYAEDNDGEVDXXXXXXXXXXXXXXXXRGRGVQKATADQQDRRGAASKLTAARPGKGKGKDLSARYTPLPLRDELRRPVGEEKALPKDVRSFRRLVRAAVKDVSGKDVAFHFRDPVDLVSYPQYVELVAEPMDLSKILFKLRQGEYDSREGRNALMQHINLIHENCEAFNGKDALISENAHQVSGTLIARIYKH 1066
DA A + W CP CT+DN+L +DKCVVCSQRRPAAALPRG+R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RQRRGVARVNYAEDND + D XXXXXXXXXXXXXXX A K R G R P+PL+DELRR V EE+ LP DVR FRR+VR+AVK S + HFRD VDLV+YPQY ++V EPMDL++ILFKLRQGEYDS+EGR L++ INLI ENCE FNGK IS+NAHQ++ LI R+ H
Sbjct: 2565 DALAPTTWSCPICTVDNDLADDKCVVCSQRRPAAALPRGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSSGGR-------DRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXX------------------AKKSKVVRSG---------RNAPVPLKDELRRGVAEEEVLPGDVREFRRVVRSAVKGFSKEAFTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYDSQEGRKLLLRDINLIPENCETFNGKGVQISQNAHQLARDLIDRLDDH 2838
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE) HSP 1 Score: 209 bits (533), Expect = 1.800e-51 Identity = 171/308 (55.52%), Postives = 193/308 (62.66%), Query Frame = 2
Query: 143 DAAAASLWKCPTCTMDNELVNDKCVVCSQRRPAAALPRGTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRQRRGVARVNYAEDNDGEVDXXXXXXXXXXXXXXXXRGRGVQKATADQQDRRGAASKLTAARPGKGKGKDLSARYTPLPLRDELRRPVGEEKALPKDVRSFRRLVRAAVKDVSGKDVAFHFRDPVDLVSYPQYVELVAEPMDLSKILFKLRQGEYDSREGRNALMQHINLIHENCEAFNGKDALISENAHQVSGTLIARIYKH 1066
DA A + W CPTCT+DNEL +DKCVVCS+RRPAAALPRG XXXXXXXXXXXXXXXXXXXXXXXXX RQRRGVARVNYAEDND + D XXXXXXXXXXXXXX A K R G R PLPL+DELRR V EE L DVR FRR+VR+AVK S + HFRD VDLV+YPQY ++V EPMDL++ILFKLRQGEYDS+EGR L++ INLI +NCE FNGK IS+NAHQ++ LI R+ H
Sbjct: 3009 DALAPTTWSCPTCTVDNELADDKCVVCSKRRPAAALPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGR-----------------------------------DRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXG------------------AKKSKVVRMG---------RNAPLPLKDELRRGVAEEVVLLCDVREFRRVVRSAVKRSSKEAYTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYDSQEGRKLLLRDINLIPQNCETFNGKGVQISQNAHQLARDLIGRLDDH 3254
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Match: A0A6G0SF06_9STRA (Cation-transporting ATPase n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SF06_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.150e-9 Identity = 50/179 (27.93%), Postives = 82/179 (45.81%), Query Frame = 2
Query: 803 DVAFHFRDPVDLVSYPQYVELVAEPMDLSKILFKLRQGEYDSREGRNALMQHINLIHENCEAFNGKDALISENAHQVSGTLIARIYKHQQHDDSGSGANTGGGMDYGXXXXXAVEDAPENSPA------KFCSACGEGTDGSEALVLCEGCGAPHHVMCVSAGGTAGDVHGAPWICFSC 1321
++A F PV++ P Y +L+ PMDL I +L +G YD R L++ +NL+ ENC AFN DA IS A+++ ++ R+++ + D P N+P + C CG+ + E+++LC+ C A +H C+ A + W C C
Sbjct: 3435 ELALAFSAPVNVNEVPGYADLIKHPMDLGTIKIRLSRGFYDQRF--EMLVRDVNLVWENCFAFNRLDADISAGANRLR-SIFNRLFEQW------------------------ITDVPPNTPVTHLASEELCRQCGQ-MNAQESMLLCDSCDAAYHAFCLQPPLAA--IPPGNWFCPRC 3583
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Match: A0A6G0W686_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W686_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.010e-7 Identity = 53/182 (29.12%), Postives = 79/182 (43.41%), Query Frame = 2
Query: 776 AAVKDVSGKDVAFHFRDPVDLVSYPQYVELVAEPMDLSKILFKLRQGEYDSREGRNALMQHINLIHENCEAFNGKDALISENAHQVSGTLIARIYKHQQHDDSGSGANTGGGMDYGXXXXXAVEDAPENSPAKFCSACGEGTDGSEALVLCEGCGAPHHVMCVSAGGTAGDVHGAPWICFSC 1321
A V+ + D+A F PVD V +P Y LV +PMDL + +++ GE++ R +A+ ++ I NC AFNG A IS+ A Q+ + Q G+ VED P A C C + + +C C A H+ C+ G+V +PW C C
Sbjct: 2612 AVVETLKKYDIAQPFLQPVDPVQFPDYANLVRQPMDLGTLTQQIKAGEFNDR--LHAIPVEMSRIWTNCFAFNGPTAEISKMARQLRSIFYRLMELWVQKTPMGT----------------RVEDLPR---ATLCRKCHQDVP-KDTRAVCTSCDAAIHLSCI------GEV-SSPWHCDRC 2764
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Match: A0A5D6XGD4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGD4_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.180e-6 Identity = 48/189 (25.40%), Postives = 84/189 (44.44%), Query Frame = 2
Query: 755 SFRRLVRAAVKDVSGKDVAFHFRDPVDLVSYPQYVELVAEPMDLSKILFKLRQGEYDSREGRNALMQHINLIHENCEAFNGKDALISENAHQVSGTLIARIYKHQQHDDSGSGANTGGGMDYGXXXXXAVEDAPENSPAKFCSACGEGTDGSEALVLCEGCGAPHHVMCVSAGGTAGDVHGAPWICFSC 1321
+ R + A V + ++A F +PV+ P Y ++V PMDL I +L +G YD R + ++ +NL+ ENC AFN DA IS+ A+++ ++ R+ + + S C C DG+++++LC+ C A +H+ C++ + W C C
Sbjct: 3381 TLRERMEALVVTLLRNELALPFAEPVNPKLVPGYADVVKTPMDLGTIRMRLGRGLYDQRWEQ--AVRDVNLVWENCFAFNRLDAEISKCANRLR-SVFNRLLEE-------------------WILVPPSTPVAQLSAEDQCRVCRR-MDGTDSMLLCDSCDAAYHIYCLTP--PLASIPAGNWFCPRC 3544
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Match: A0A6G1K6S1_9PLEO (Bromodomain-containing protein (Fragment) n=1 Tax=Pleomassaria siparia CBS 279.74 TaxID=1314801 RepID=A0A6G1K6S1_9PLEO) HSP 1 Score: 63.2 bits (152), Expect = 2.620e-6 Identity = 33/99 (33.33%), Postives = 56/99 (56.57%), Query Frame = 2
Query: 782 VKDVSGKDVAFHFRDPVDLVSYPQYVELVAEPMDLSKILFKLRQGEYDSREGRNALMQHINLIHENCEAFNGKDALISENAHQVSGTLIARIYKHQQHD 1078
+++ V+ F+DPVD+++YP Y V PMDLS + KLR+ YD+ M+ ++LI NC AFNGK+ +++ A+ + + + K + D
Sbjct: 297 IRNTKKIKVSQFFKDPVDILAYPTYTSFVPHPMDLSVMESKLREQTYDNI---GHFMEDLDLIINNCVAFNGKEHAVTQAAYNMRAYFLKGMGKMPKGD 392 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1.288.1 >prot_P-littoralis_Contig1.288.1 ID=prot_P-littoralis_Contig1.288.1|Name=mRNA_P-littoralis_Contig1.288.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=385bp MDNELVNDKCVVCSQRRPAAALPRGTRKRQRQQQQQPAEDDGFSGGDESSback to top mRNA from alignment at P-littoralis_Contig1:1319742..1322989- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1.288.1 ID=mRNA_P-littoralis_Contig1.288.1|Name=mRNA_P-littoralis_Contig1.288.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3248bp|location=Sequence derived from alignment at P-littoralis_Contig1:1319742..1322989- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1:1319742..1322989- >mRNA_P-littoralis_Contig1.288.1 ID=mRNA_P-littoralis_Contig1.288.1|Name=mRNA_P-littoralis_Contig1.288.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1155bp|location=Sequence derived from alignment at P-littoralis_Contig1:1319742..1322989- (Pylaiella littoralis U1_48)back to top |