mRNA_P-littoralis_Contig108.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig108.91.1
Unique NamemRNA_P-littoralis_Contig108.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig108.91.1 vs. uniprot
Match: D7FQ16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ16_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.430e-123
Identity = 199/274 (72.63%), Postives = 224/274 (81.75%), Query Frame = 3 
Query:  180 FELSAPKRLGRIVVLGYCDIAAAGIRVLEGISGRPASTADGTSLELREMGRETLTFTGMGAAVFDGFPALEAVHLDEVAEVSEGDRSDEPAVTMLKLNTAVGQDLSASLVLSLVDLLAVHRPTLDRLIIVAAVQPPKRHQMPAAAATIPPDVVCTFSCDGHRGGNDGKHTKPLPASVSKLSALPTGARLADSFLTTLVRLCRLEELPLTVLARVGYRTTGAAADVDGTDEAINGLGKCLADVLGLEFDSQKACGARRSKGWKGAPPSQLVPGYI 1001
            F LSAPKRLG+ V+LGYCDI AAG+RVLEG+SG    T +G    LRE GRE L F+GMGAAVFDG PALEAVH +     S    +DEP+VT+LKLNTAVGQ LSASL LSLVDLL   R TLDRLII AAVQPPKRHQ+PA AATIPPD VCTFSC    GG D  ++ PLPAS+S L +LPTGAR+ADSFLTTLVRLCRLE++PLTVLARVGYRTTGAAADVDGTDEAINGLG+CLA  +GLEF+S +ACG RRSKGWKG+P +Q+VPGYI
Sbjct:    4 FTLSAPKRLGKTVILGYCDIGAAGVRVLEGMSGASQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHFE-----SSAGGTDEPSVTLLKLNTAVGQGLSASLSLSLVDLLVARRTTLDRLIIAAAVQPPKRHQIPAEAATIPPDAVCTFSC----GGVDS-NSSPLPASLSTLPSLPTGARIADSFLTTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRRSKGWKGSPSAQVVPGYI 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ16_ECTSI1.430e-12372.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig108contigP-littoralis_Contig108:395134..401377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2407
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007850.1
Cds size831
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig108.91.1prot_P-littoralis_Contig108.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig108 395307..399974 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789409.8530855-UTR-P-littoralis_Contig108:395133..3953061680789409.8530855-UTR-P-littoralis_Contig108:395133..395306Pylaiella littoralis U1_48UTRP-littoralis_Contig108 395134..395306 +
1680789409.9183092-UTR-P-littoralis_Contig108:399974..4013771680789409.9183092-UTR-P-littoralis_Contig108:399974..401377Pylaiella littoralis U1_48UTRP-littoralis_Contig108 399975..401377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789409.8637555-CDS-P-littoralis_Contig108:395306..3953881680789409.8637555-CDS-P-littoralis_Contig108:395306..395388Pylaiella littoralis U1_48CDSP-littoralis_Contig108 395307..395388 +
1680789409.873547-CDS-P-littoralis_Contig108:398032..3982231680789409.873547-CDS-P-littoralis_Contig108:398032..398223Pylaiella littoralis U1_48CDSP-littoralis_Contig108 398033..398223 +
1680789409.881741-CDS-P-littoralis_Contig108:398588..3987411680789409.881741-CDS-P-littoralis_Contig108:398588..398741Pylaiella littoralis U1_48CDSP-littoralis_Contig108 398589..398741 +
1680789409.8903656-CDS-P-littoralis_Contig108:399208..3994781680789409.8903656-CDS-P-littoralis_Contig108:399208..399478Pylaiella littoralis U1_48CDSP-littoralis_Contig108 399209..399478 +
1680789409.9011304-CDS-P-littoralis_Contig108:399839..3999741680789409.9011304-CDS-P-littoralis_Contig108:399839..399974Pylaiella littoralis U1_48CDSP-littoralis_Contig108 399840..399974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig108.91.1

>prot_P-littoralis_Contig108.91.1 ID=prot_P-littoralis_Contig108.91.1|Name=mRNA_P-littoralis_Contig108.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MTFELSAPKRLGRIVVLGYCDIAAAGIRVLEGISGRPASTADGTSLELRE
MGRETLTFTGMGAAVFDGFPALEAVHLDEVAEVSEGDRSDEPAVTMLKLN
TAVGQDLSASLVLSLVDLLAVHRPTLDRLIIVAAVQPPKRHQMPAAAATI
PPDVVCTFSCDGHRGGNDGKHTKPLPASVSKLSALPTGARLADSFLTTLV
RLCRLEELPLTVLARVGYRTTGAAADVDGTDEAINGLGKCLADVLGLEFD
SQKACGARRSKGWKGAPPSQLVPGYI*
back to top

mRNA from alignment at P-littoralis_Contig108:395134..401377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig108.91.1 ID=mRNA_P-littoralis_Contig108.91.1|Name=mRNA_P-littoralis_Contig108.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6244bp|location=Sequence derived from alignment at P-littoralis_Contig108:395134..401377+ (Pylaiella littoralis U1_48)
TTGGAACATACACACACAGCGAACGCCAAACCCGACAGCCCGATAACCCG
GCCTAAAGTCACGCTCCCTTCTCTCTTCTCTCCGCTCTCCGCGCGCTCTC
TCTCTCTGAAGATACACCGCATTGTTCGCTTGATTGCAGCGATTTCGTCG
GCGGGACCCATACTACTACTACTATGACTTTCGAGCTCTCGGCTCCAAAG
CGACTCGGAAGGATTGTCGTCCTCGGGTACTGCGACATAGCAGCAGCAGG
CATTCGTGAGTGGTGCTGTGAGGTAGACTCGGCAGGGATGAATCAGCGCA
CACTGCGATGATACTGGGATGTATCATACATACAAGTGTAAGTTTTTTTC
GACGAGTTTTGCGTCGCACAGCAGCAGTCCTCTACGTACACTAACACCGG
AGGTGGTATCCAGAGCCAAAAGGACTTACTGACTGTACAGCGGTTGTACG
GGCCTCTTTAAACGGAAATGTGACACCCGGATTGGAGGCCCAAATTGGAC
AGACCTAGGTACGTAGCTTTTGTGGAAAAAAGACCTGTGAAACGTCGTTT
TAACGAAAAATGTGACACCCGGGTTGGATGGAGCATGTAGCTGATCTGCG
TTCCAAATATGCGACATACATGCAAACCCCAACGAAGAAACTGCTGTTTG
TTGTAGAACGCTTTTTGCGCGCACGCATTCCCTAGTCGGCGGTAGGAGCC
GTGATCAGCAGACGAAGTACTATCTGCTGCCAGCTGGCTATAGTTCACGG
TTCATGTCAGCCATCGGCACGTATGATAGCAGAGACGTGTGTGTGTGTAT
GTACGCATGGGTGTACTGTATCGTAACTGGTAAATTGTGTGTGTGGGTGT
GTGCGTGCGCCCCACAGGCCTGCCCTCGGCAGCAGCAGCTGCTTGCGGCT
AGCTGCGTGCGTGCATTTTGTCGGCCTCTTTGGTTGAAAAAACTACTGCT
GTACACGAAACGTGTTGCCATTTCATCCATCGCCTTTCGTTTCTCGCACC
AACTCCCTTGGCCATTCCAGTTCCGATTCGTCAAATTCCAAAAATCAACC
TCTCGAGAGGTTGATTGATTTGTTTTGACGAAAAAGCTAGCCCCGTGGGA
TGCGAAAGCTAGCCCCGTAGAATGCAAAAGTTGATTGGGCAATCAGAAGC
AATTCCAATTCCAATTAGCTTTCCAATCCGGGTGTCACAATATCCGTTAA
AATAGGCCCTAACGAGGTCGACGAGGGTAAAGGGGACCGCTGAACCCTCT
CGAGACAAAAAGCTGAAAGGCAAAAAAGACAAGCACCGGAGAAGGGGGTT
GGCTGAAAAACAAATAAAAACTACGCTCCTCTATAACCTAGAACCTCCCT
CCTGTGTGACCCTGGCTGGTGCTCCCACTTTCATCCCGAAAGGTGTAGAC
TGGTGCCCAGAATAAATAGGATGTAAACACACTCTCTCACACACACACAA
TACCCGAATTGTAGCGTGCTCTGTGTTGCCATCCCCTTCATATCTGAACG
CCAGCCTACACCTCCCGGTTAAAGCAAAAAGCTGAGCGCACTACTGCTGT
ACGGCAGTCGCCGCGGTCACGCACAGGAAGGTCAACACAAATTTGTCTTG
TTTCCACCGACTTTCTTCTGCGTTGCTGGCGAGTGCACGTGTACAAATGT
GAATGTAGGTTTCGGCTAGAAAGCGAACAAGGTCAAAGGTCTGTCGAAAC
CCTTCTCGCGACAGAGAAAAAGGATGGTCTGTGGTCTGTCAAGGGCGGTA
AAAAATTTCCAGTCCTAACTTCTCGCCGTATGTTTGTAGGAGTCCCGACC
TTGGGCGAACTCATCGGGCACACCATACATAAAGAGGCGACGTGTGTGTT
GGCGCGCTCAGATGTGTTGTCGGGGAGGCGATATCGAGGGCCGCAGCAGT
AGCTCAAAAACTCCGCAAGCTCGACCGATACCAAACATTTGATGCGGCTG
TACTCGCCGCCATGGGCACCGATCTTCGCAGTTGCCGGTCATCCGAGGCA
GCTAGTGGCATGAGCTACTGCTGTAGGCCTTCGCTTTTAGAAGTTGGGGT
TCTGTGGTGGCGAGCACAGCACCGGAAGATGTTTAATGTCGGTCCAGTTT
GCGGACTTTTTGAGCCACTGTCAATGCGTACGTCGCTGCTGCAGATTATC
ATGTACTTACAAGTACTTGAAATCGCCTGTGGGATCGAGACTCCTTGCAC
ACAACAGTCCTCATTTGAGCCTTGCAGTATCCGAATACGCTGCTCTGACT
TGATTTGAGTTGACGGAAATTCGCATCTTCATTCTAATGAAGACGATTGA
AGGTAGACTGCGTGATATGCACGTCAAACAGAGAGAGCGTCAATCGTATT
TCGCGAACAACGCCGCGAAATTCGACTCAAAAAAGGTCGACGAGGGGCAA
GGATGGTCGTACCCTTCTCACGATACATCAGTAGAAATAAAAGAAAGCAC
CGCTGGAGGAAGGCGGAGAAATAAAAAAAAGACTCCTGCGTTGACGTTGC
TCCTATCATATGTGACCTTGGCTGATGCGTCGGACTTATGCCAAAAGGTG
TAGAAGGTGTAGATTGGCATCAAGAATAGATGGGATGTCAACACACGCAC
ACACACCTCCGAAGCACGGGAGGATCGAGCTCTCCCACGCCGATGCCTTT
TAGTACCAGTACGCGTGATAATTTTAACTATCCTCATGCCGACATCGTTC
AAATTCTACTTCGAAGTACTAGAAATCACTTGTGTATCAAATCACGTCCA
TGAACACGCAATTCTTGTCCTAAACGGTATTAATATTCGCAGCCATTTAC
TGCCCAAACAAACCATGCTGCTGTACTCGTACCCTGTTCTATACATACCG
CAGTATCATAAACGCCTGCTCTTCCCGTTGTGAACTCTCCTCATGGAAGG
CGTTCTTGAGGGCATATCGGGGAGACCAGCATCAACAGCAGACGGGACTT
CTTTGGAGCTGCGAGAGATGGGCAGGGAGACCCTCACGTTCACGGGGATG
GGGGCAGCGGTTTTCGACGGTTTTCCAGCTTTGGAGGCCGTGCACTTGGA
CGAGGTGGCGGAGGTGTCAGAAGGCGACCGGAGTGATGAGGTATACTCGT
ACATGACCATGGAAGTTCAAAAGAGTGGTATGTACGTTGACCGCATCTCG
TGTCTTTCTGGTGCGTGTATCAGTCCTTGGGTGAGCTCTGACAAAGATTT
CCGAACAACACTTGCCGTGCCTTACACTCTGTCGTTTGGAATCTCGCGCC
TTTTCCCTTCCTTTCTTTGTTTTTCTCGTTCTTTCAACGTTGTTGCCCTC
GGTCACAACCTCCTAAACGAAGAAGATTGACGCTGCAGGAGTGCTGTACT
ATATCATGCCTCCTCATGTGCCTCATGAAATTCACCTGACGTTTTTTCCC
GTCTCTCGATCCTGCCTGTTTTGTTCTGTTTCGTTACTGGTTCTCTCGTT
TCAAGCCAGCCGTCACCATGCTGAAACTCAACACTGCCGTCGGTCAGGAC
CTCTCGGCGTCATTGGTGTTGTCTCTCGTCGATCTGCTGGCCGTGCACAG
GCCGACATTGGATAGGCTGATCATCGTGGCCGCTGTACAGCCTCCCAAGA
GGCATCAGGTACACGCGGACCTGAGCTGGTCTGAGCTCTCCGGCATGTTT
TCACTGGTTTCCTTGTCGATACAAAGCGCTATTCAATACAACCAGCAGTC
TTGTAGCGAGTCTTGTACAATGAAGGGAATCCTGAAGTCTTGTCAGAATC
CTGTTCTGTCTCGTGTCGATATTTGTATCACACACGAAGCCGGCACTCCC
CGAATTCGTTGGGCTGGTACAAGCTTTTCGCGTTCTCTCGTGACGGTTGC
CCATTTTTCCCCTAACGCAAGGGGACTCTCGCCTAAAGCGCAACCTGCCC
CCCCCCCCCCTGTCGTGAGAATAATGCGTGGCCAATGAGCAACTGTCTGA
GGCAAGTAGCAAACGCACTCCCCGCTTGCGCCTTTCCTCCTAGTCCTAAC
ACGCACACTTGCTGCTGCGATCATGCCTTATTTCCCTGGCGAACGCAATC
AATTCCTGCCCAATCTCACGACCAGATGCCGGCAGCAGCGGCAACCATCC
CACCGGATGTCGTGTGCACTTTCTCCTGCGACGGCCACCGCGGCGGAAAC
GACGGAAAGCACACCAAACCGTTACCGGCCTCGGTGTCAAAGCTGTCGGC
GCTGCCCACCGGGGCTCGTCTCGCGGACTCATTTCTCACGACTCTGGTGC
GGCTCTGCAGGCTGGAGGAGTTGCCGCTAACGGTGCTGGCGCGCGTCGGC
TATCGCACCACTGGAGCGGCCGCGGATGTGGACGGAACCGACGAGGTCAG
TCATTTTGCATAATAAATCAAAGCATGGTGGGCGTTGGGGGCTAAGGGGG
GGGGTAGGTCAAATTGTTGACTTGAACCGTACATAAAGCAAAACGGTTTT
CGGACTACTCTGTCCGGATCGCTGTGGAAAAACATCCGGTGCAGCGCGCC
ACTTCACCAAAGCTCCAGGCCTTACAGTTTTGTTGCGCCGGAGGCTGGTG
CGTATCACGAGTCTTGTTCCATACCGATTCCGGGTTCCACTTTTTGCGAG
AAATGACATATTATATGCTTCGTGTATTCTCAGGCCCCCCCGTCGCCGAA
TGCGGTGTGTCATTGTTTTATTTTCTTCACCCATTTTTGGTGTGTATAAT
ACACAGGCGATCAACGGTCTCGGGAAATGCCTTGCGGATGTGTTGGGGTT
GGAGTTCGACTCGCAGAAGGCGTGTGGAGCACGAAGATCGAAGGGGTGGA
AAGGAGCGCCCCCTTCACAGCTCGTACCCGGCTACATTTAGCGGGCATGT
GACATGACAACACTCGTTGAATTGTCGGTGAGTGCTACTGTACTTTGTTT
GCTGTGGTCTCGACGGCTGTAGCTCACGCTTTGGGCCCCAGTATCGCTAA
AAGCCAGGATGAAGGAAACGGGGGGTAGGCCGAGGAGCGAGGGGTGGGGG
CAGTATGTTTTGGTCCGGCCGCGAAGGTCATGCGAACTATCGACCTTCAT
GTGTGCCGGTTCGGCTCAAAGCGGTTTGCCTTGTAGCGCGGAGCTCGCCT
CTCCGGGTGGAATGATTGTACTGCGCGTGTTGATGTTGTATACATGTATC
GCGTGGGCTTCTCAGCGGGTTTCTCGGCGCGAAGCTCGCCTTCCTGGATG
AAACGCTTGTTCTGTGCGTGAGGATATTATGTACTTTGAGGTACTTGGCA
CATTCCGGGCGGGCTTATTTTCCCAAGCCTGTGGTGCGCGTGTTCGACAA
AGATTGGGCAATGAACACTTGAATACGATGTGAAAAGGAAAGGTTTTGTT
TGACGTGCCGTCCAAGGCACGAAACGTTGACAAGCTTTGCGCCTGAGGGC
GTCGACGTTTGATCGGTGATGGCCGTGCCCTTGTCGGATAGATTCAAATC
ACCCATCAGGGCATCTCTTTTCGGAGAGAGGCCAAGAGGGTGGAGAGGGG
AGGGGAAATGCAGGAGCTACCTTATCGTCCCACCTGTAGACATCCCTTGG
TTAAGCGTGGGCGGTGTATCTATGCTGCCTGTTTTTACTTTTGAGTACTG
GCTGTATGTATGGCCTTGTTTGACTTCGTTTTCAATCTATTTTTCCCTTT
TTCCGCGATATTGGCCTGGTCTGTGACCACTGGCTAGACTTTTGCGGTGA
GCTTGTGTGCACACATCCCATTCTTCTTTTATGTGCTGAATGTTGTTTTT
CACCTCCAAAGCTCTTGTCATTCCGTGCCAACGTTGGGTATAGTGGGAAC
CCGTGGCCTTGATGCACAAGCATACGAGTGCGCCATTCCCATCGACCTTG
TAGCAGGGCCGGAGCTTTGCAACGGGGTCAGGTGTTGATTATCGCCATAG
CGTAGGCGGTGTGTCGTACATAGATGGAAATATCGACGTATATGATAAGC
CTGGCGGGAACGCACCCCCTACCCGAGGGAGGTTATCCAAGAAGACGTCG
CGCAACACCCATCGCGATAGCACTCCCGCGGCTCACAGTCCAGTGCCCAG
CGACATGGCCATTTTTCTCGAGCCCAACGACCGCTACACGTCAAGATCCG
GCGAAACCCAATTCATTTGTGGAGACCTGATGTTTCTCAAAAGTCGGAAG
TAAGACAACAGCAAGGCCCAATCGATACCAAGATACCTGTCTCTCCCCTC
TCGGGCCCTCTCGGGGGGACCCTTGCATATTCTGAGTGCACAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig108:395134..401377+

>mRNA_P-littoralis_Contig108.91.1 ID=mRNA_P-littoralis_Contig108.91.1|Name=mRNA_P-littoralis_Contig108.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig108:395134..401377+ (Pylaiella littoralis U1_48)
ATGACTTTCGAGCTCTCGGCTCCAAAGCGACTCGGAAGGATTGTCGTCCT
CGGGTACTGCGACATAGCAGCAGCAGGCATTCGCGTTCTTGAGGGCATAT
CGGGGAGACCAGCATCAACAGCAGACGGGACTTCTTTGGAGCTGCGAGAG
ATGGGCAGGGAGACCCTCACGTTCACGGGGATGGGGGCAGCGGTTTTCGA
CGGTTTTCCAGCTTTGGAGGCCGTGCACTTGGACGAGGTGGCGGAGGTGT
CAGAAGGCGACCGGAGTGATGAGCCAGCCGTCACCATGCTGAAACTCAAC
ACTGCCGTCGGTCAGGACCTCTCGGCGTCATTGGTGTTGTCTCTCGTCGA
TCTGCTGGCCGTGCACAGGCCGACATTGGATAGGCTGATCATCGTGGCCG
CTGTACAGCCTCCCAAGAGGCATCAGATGCCGGCAGCAGCGGCAACCATC
CCACCGGATGTCGTGTGCACTTTCTCCTGCGACGGCCACCGCGGCGGAAA
CGACGGAAAGCACACCAAACCGTTACCGGCCTCGGTGTCAAAGCTGTCGG
CGCTGCCCACCGGGGCTCGTCTCGCGGACTCATTTCTCACGACTCTGGTG
CGGCTCTGCAGGCTGGAGGAGTTGCCGCTAACGGTGCTGGCGCGCGTCGG
CTATCGCACCACTGGAGCGGCCGCGGATGTGGACGGAACCGACGAGGCGA
TCAACGGTCTCGGGAAATGCCTTGCGGATGTGTTGGGGTTGGAGTTCGAC
TCGCAGAAGGCGTGTGGAGCACGAAGATCGAAGGGGTGGAAAGGAGCGCC
CCCTTCACAGCTCGTACCCGGCTACATTTAG
back to top