mRNA_P-littoralis_Contig108.84.9 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig108.84.9 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE) HSP 1 Score: 1019 bits (2635), Expect = 0.000e+0 Identity = 863/1566 (55.11%), Postives = 953/1566 (60.86%), Query Frame = 3
Query: 2391 KELHDLQGVYEDFRAASRERVGALSERAASALRRERSRAVLRATIWQWRAITLE--SDLGMAVAMKERLKLRQEQRDAFGKWLDLCRRRSLARSVLSRLLQRRTVVDQRGALRRWVRQAAAVAXXXXSAVLRRAEAERARSGAAAVLAKGLARGRRRSLESGFGKLREGLVVSQMKSRALRHLAIGYHRRGLDALSVALSRWSRHVSARGLKAAAIRRLARVRRRRELVQAMRRWGGVVGVEQAVERLAGXXXXXXXXXXXXXXXXXXREECNRQRAVETREAGQRRRQVLSELLAVANGRKLLMRCLMGWRAHAVTRRCQLRSARSFLLASNRRAVRGALVAWRDGRRRRDNAARKLWHLGRACRTAALREGLRWLRVCARGKERLEAATIVSSAKLETEELRRERDGASQRLLAAIEENHRAARQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTVRGLEKRQQREAFWAWRAAAENESRRAVHISGACARLRAVRKRPGRLQVANAFSVWARLSAASSQSDRRAETAASAKRHRTLRACLSALRANASLRRRARLALLSLDRRCRLRRLARGWGAVLRAAATGSAEERAVLRLGRAEAAVAAGRLAARARAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGSAALAARSKRRRVRTLFACWRREALASSRIRSRTLSRVAGAAEGLVSEAFFRWRGQNRAAHGRAKVLTALARVSDRRRFERAEMRLALKTWRRNACGGSGGAGENWERLG---AADQEDGLEAVAGMFVEAAAAFSTAASVPRVFELVEEFVSEVAISSQGRLLLLDGEPGGGMFCLELDRRASHEQEPLEATFPIGNGLVARCVTTGLAFQTAHRGDSGGXXXXXXXXGVSPAPSAHRPFSNSNANHSSRVGGISFALAGPADLHALPLPESYDPAGPPYLRAATYGVQRRLPHPLSVSFQGWKKRSDAGAPGPESASTVPPPPASWDDRYNRRPGDSPVLRCGGGDDGGXXRGRGRSRLAFFPATDDCGSSRSPSPADPVGAGGRARGYGFLSNSPPPAGGVAGGRDGKRLWSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDEGMLLQVACLPVAGGDGGQALIGVLKA-------WRQHHKQQGGGESNRGSLQGFSGGEMAALGVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLARQRDDARVALARAKGTLRRMAPALREARDRQLGFRHYHDLIVNMSKAVLQDDGFHSGPGAEQAQEEDCRREIAADTARCCGXXXXXXXXCQGSCVEATRGGGGRDGSVCGRTASVGSHTRNNNNDSGGGNTRPRTCGPDACARGTSNDSRRQICGGGDLGLGGSGGASRTSS-PGPRLVNGRARSALRNGCGFEAYCSSPEDSAAAAVSSAPSAGGCGRGGDRDGGEAGPAILAVLRETAAAGGGMRIRLGA 7049
+ELH LQGV+++F+A S ER SER ASA RER RA LRA IWQWRAITL S+LG A+ + +RLKLRQ +R RT LR W RQAAA XXXX L RAEAE R AAAVL + L+RGRRRSLE G GKLR+G+ S MK+ S+R A A+RRLAR+RRRR+L AMRRWGGVV EQA+ L G +V R + + CLM W+A+ V+RR QLRSARSFLLA NRRAVRGALVAWR+GRRRR AARKLWHLGRACRTAALREGLR L+V AR KER EAATIVSSAKLETEE+RRERDG RL A +E HRAARQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R VR LEKRQQ AF AWR AA NE+RRA ISGACARLRAVRKRPGRLQ+A++FS+WARLSAASS SDR AE AA AKR R +R C S LR+NASLR+R R AL SLDRRC L +LARGWGA+LRAAAT SAE R+ LRL RAEAAVAAGRLA RARAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLG+AALAAR WR EA ASSR+RSR LSR++ AA+GLVSEAF WR +R AHG+AK LTALAR SDRRR +RAEMRLAL+TW RNACGG G G G EDGLEAVAG+FVEAAAAFSTA+S+P VF LVE+FVSEVAISS+GRLLLL+GEPGGGMFCLE DRRA +Q+PLEA+FPIGNGLVARCV TGLAFQT RG +G G SP S+ R +S S G + ALAGPADLHALPL E YDP P + RAA G + PLS+SFQGWKK++ G P P+SAST+ PPPASW+ R +R P SPVL GG GRG SRLAFFPA+DDC SSRSP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +L VACLPVA GDGGQA++GVLKA WR+ +Q G E +R +GFSGGEMAAL VVA XX GLARQRD+AR ALARAKGTLRRM PALREARDRQLGFRHYHDLIVNMSK VLQD G E E + +A GXXXXXXXX R ASVGSHTR+NNN S G D RG++ +R G G GG S T G RL G + L CGF+ SSP D AAAV A S G G RD PAIL VLRETAAAGGG R+ GA
Sbjct: 14 QELHHLQGVFDNFQATSAERAYDSSERTASAFVRERQRASLRAAIWQWRAITLRASSELGTAMMLADRLKLRQAKR--------------------------RT-------LRHWARQAAAXXXXXXXXXLARAEAEGVRLNAAAVLTEALSRGRRRSLERGVGKLRDGVEASLMKA-----------------------------SSRETTATALRRLARLRRRRQLSGAMRRWGGVVSAEQALGGLGG--------------------------------------RVERXXXXXXXXRAVRVWCLMAWKAYGVSRRIQLRSARSFLLAQNRRAVRGALVAWREGRRRRAEAARKLWHLGRACRTAALREGLRRLKVSAREKERREAATIVSSAKLETEEMRRERDGMGSRLTEATDEIHRAARQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDETRDAAYLEMVERVVTRNARRKLLQTTLRAWSEGARRRRRFAATFWRAARAVRSLEKRQQHVAFLAWRVAAVNETRRAADISGACARLRAVRKRPGRLQLASSFSIWARLSAASSHSDRHAEIAACAKRQRAVRTCFSTLRSNASLRQRTRRALSSLDRRCSLSQLARGWGAMLRAAATASAERRSGLRLSRAEAAVAAGRLATRARAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGAAALAAR------------WRGEARASSRLRSRALSRISQAAQGLVSEAFSTWREGSRIAHGKAKALTALARASDRRRSDRAEMRLALRTWTRNACGGDGDGGGRRSGDGEPRGGGMEDGLEAVAGVFVEAAAAFSTASSIPEVFTLVEDFVSEVAISSRGRLLLLNGEPGGGMFCLESDRRAPPDQDPLEASFPIGNGLVARCVATGLAFQT-RRGGNGSTG------GASPPRSSRRLYSTS--------GALDVALAGPADLHALPLQERYDPESPSH-RAAENGAHAQ---PLSMSFQGWKKKAVTG-PIPDSASTLLPPPASWNHRRSRSPDGSPVLGVGGS-------GRGPSRLAFFPASDDCESSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLLF-VACLPVACGDGGQAMMGVLKASESWLLAWRE--QQHRGDEGHRPPDKGFSGGEMAALAVVAGQAAAALRRVGAAASEREEVLQELDAXXADRVDETQKREEAVKEEMKHLREAMEHLSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQDG---DGANPEADHERGRKGTVAPPPCHADGXXXXXXXX------------------XXXRAASVGSHTRHNNNGS---------TGEDMGTRGSNPGARSTNATFGSEG----GGVSETPGRQGSRLAAGGGNAPLSE-CGFKVSPSSPRDKVAAAVPFARS----GDDGGRD--RFDPAILTVLRETAAAGGGSRVAAGA 1396
BLAST of mRNA_P-littoralis_Contig108.84.9 vs. uniprot
Match: D7FQ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ02_ECTSI) HSP 1 Score: 662 bits (1709), Expect = 1.700e-205 Identity = 604/967 (62.46%), Postives = 664/967 (68.67%), Query Frame = 3
Query: 966 SGGQRRGEEE-ERGGLGPSA-ASIGSVEGELRGAELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYTPPLGASAATSAATSR------IGGGXSXSGGVGFSSAISSIPPLAYK-------------------DRSRSPRWG-----SGGXXXXXXXXXXXXXXXXXXXPRARKPPLRRRDLDRTVDKEXXXXXXXXXXXXGAARSSSYHRVGAKVNRGRSGARGRSGGGGLRREAEATLDGGIF-FPASTASS-------------------------PRMVRKPWRSLSPSPRATAVAGATGSGWLTGPFGGSSSIGNNRRSDDVHGAKLSELRERLLAELVEKEDLARELEECRREAEEFREKEERREREVEELVEKXAEERRARRVAEDELESLGASHRSLEETSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAADRHRDL-------EGERDRHLKELHDLQGVYEDFRAASRERVGALSERAASALRRERSRAVLRATIWQWRAITLESDLGMAVAMKERLKLRQEQRDAFGKWLDLCRRRSLARSVLSRLLQRRTVVDQRGALRRWVRQAAAVAXXXXSAVLRRAEAERARSGAAAVLAKGLARGRRRSLESGFGKLREGLVVSQMKSRALRHLAIGYHRRGLDALSVALSRWSRHVSARGLKAAAIRRLARVRRRRELVQAMRRWGGVVGVEQAVERLAGXXXXXXXXXXXXXXXXXXREECNRQRAVETREAGQRRRQVLSELLAVANGRKLLMRCLMGWRAHAVTRRCQLRSARSFLLASNRRAVRGALVAWRDGRRRRDNAARKLWHLGRACRTAALREGLRWLRVCARGKERLEAATIVSSAKLETEELRRERDGASQRLLAAIEENHRAARQRA 3671
SGG RGEEE ER G G SA S+GSV GELRG ELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGY PLGASAATSAA + +GGG GFSSA+SSIPP A DRSRSPRWG SGG PRAR PPL RRDLD T ++E A S SYHR G K++RGR+G R R G A AT+DG + FP SS PRM R+ W+SLSPSPR TA A A G GW + ++G+ RRS + A + ELR+RLLAEL KE+LARELE+ RREAEE +E+ E+RE EVE L+E+ A+ERRAR AE ELE L SHR+LEE SA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EG+RDR +EL DLQGV+E+F+A S ER SER ASA RER RA LRA IWQWRAITL SDLG A+ + +RLKLRQ +R AFG WLDLCRRRS AR+++SRLL R+T VDQR LR W RQAAA XXXX L RAEAE AR AAAVL + +RGRRRSLE G GKLR+G+ S MKSRALR L+I R L LS AL RW S R A A+R LAR+RRRREL AMRRWGGVV EQA+E L G XXXXXXXXX REEC RQ+ + TR+AG+R R+VLS LA A R LLMRCLM W+A+AV+RR QLRSARSFLLA NRRAVRGALVAWRDGRR R AARKLWHLGRACRTAALREGLR L V AR KER EAA IVSSAKLETEE+RRERDG RL+ A EE HRAARQRA
Sbjct: 45 SGG--RGEEEGERDGPGLSARVSVGSVAGELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYATPLGASAATSAAINGGTTAPDLGGGIGVGSVDGFSSALSSIPPFASGGXXXXXXAGSHGYVGGNTFDRSRSPRWGGRRAGSGGGSGRVATSVS---------PRAR-PPLLRRDLDETAEEEEEYKAE-------ARSSGSYHRGGTKISRGRTGGRDRRDGA-TAAAAAATVDGASYAFPMEALSSSPRQGGRSAGRGGDRPFSSSSAGPAPRM-RRSWKSLSPSPR-TAAAPAKG-GWPVA----AGALGSARRSY-IQNAGVDELRDRLLAELEAKEELARELEDSRREAEEHQERGEQREGEVEGLLEREADERRARGEAEAELEQLRVSHRALEEQLSALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDRDRVAQELRDLQGVFENFQATSAERAYDSSERTASAFIRERQRASLRAAIWQWRAITLRSDLGTAMMLADRLKLRQAKRGAFGAWLDLCRRRSHARALMSRLLHRKTAVDQRRTLRHWARQAAAAXXXXXXXALARAEAEGARLNAAAVLTEAFSRGRRRSLERGVGKLRDGVEASLMKSRALRRLSIACRHRDLGMLSAALWRWRSQASWREATATALRHLARLRRRRELSGAMRRWGGVVAAEQALEGLGGRVERVVXXXXXXXXXRVWREECTRQQTLATRKAGERCRRVLSGRLASAARRNLLMRCLMAWKAYAVSRRIQLRSARSFLLARNRRAVRGALVAWRDGRRWRAQAARKLWHLGRACRTAALREGLRRLGVSAREKERQEAAMIVSSAKLETEEMRRERDGMGSRLIEATEEIHRAARQRA 983
BLAST of mRNA_P-littoralis_Contig108.84.9 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI) HSP 1 Score: 582 bits (1500), Expect = 3.030e-178 Identity = 478/1025 (46.63%), Postives = 524/1025 (51.12%), Query Frame = 3
Query: 3990 RTVRGLEKRQQREAFWAWRAAAENESRRAVHISGACARLRAVRKRPGRLQVANAFSVWARLSAASSQSDRRAETAASAKRHRTLRACLSALRANASLRRRARLALLSLDRRCRLRRLARGWGAVLRAAATGSAEERAVLRLGRAEAAVAAGRLAARARAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGSAALAARSKRRRVRTLFACWRREALASSRIRSRTLSRVAGAAEGLVSEAFFRWRGQNRAAHGRAKVLTALARVSDRRRFERAEMRLALKTWRRNACGGSGGAGEN----WERLGAADQEDGLEAVAGMFVEAAAAFSTAASVPRVFELVEEFVSEVAISSQGRLLLLDGEPGGGMFCLELDRRASHEQEPLEATFPIGNGLVARCVTTGLAFQTAHRGDSGGXXXXXXXXGVSPAPSAHRPFSNSNANHSSRVGGISFALAGPADLHALPLPESYDPAGPPYLRAATYGVQRRLPHPLSVSFQGWKKRSDAGAPGPESASTVPPPPASWDDRYNRRPGDSPVLRCGGGDDGGXXRGRGRSRLAFFPATDDCGSSRSPSPADPVGAGGRARGYGFLSNSPPPAGGVAGGRDGKRLWSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDEGMLLQVACLPVAGGDGGQALIGVLKAWRQHHKQQGGGESNRGSLQGFSGGEMAALGVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLARQRDDARVALARAKGTLRRMAPALREARDRQLGFRHYHDLIVNMSKAVLQDDGFHSGPGAEQAQEEDCRREIAADTARCCGXXXXXXXXCQGSCVEATRGGGGRDGSVCGRTASVGSHTRNNNNDSGGGNTRPRTCGPDACARGTSNDSRRQICGGGDLGLGGSGGASRTSSPGPRLVNGRARSALRNGCGFEAYCSSPEDSAAAAVSSAPSAGGCGRGGDRDGGEA-GPAILAVLRETAAAGGGMRIRLGA 7049
R VR LEKRQQ AF AWR AA NE+RRA ISGACARLRAVRKRPGRLQ+A+AFS+WARLSAASS SDR AE AA KR R +R C S LR+NASLRRRAR AL SLDRRC LR+LARGWGA+LRAAAT SAE R+ LRL RAEAAVAAGRLA R RAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLG+AAL R +R AHG+AK LTALAR SDRR+ +RAEMRLAL+TWRRNACGG G G E G DGLEA+AG FVEAAAAFSTA+S+P VF LVE+FVSEVA+SS+GRLLLL+GEPGGGMFCLE DRRA +Q+PLEA+FPIGNGLVARCV TGLAFQT RG +G G SP S+ R +S S G + ALAGPADLHALP E RGYGF+S SPP R WSESXXXXXXXXXXXX AWR+ +Q G E +R +GFSG EMAAL VVA XX GLARQRD+AR ALARAKGTLRRM PALREARDRQLGFRHYHDLIVNMSK VLQD G GA +++ R+ C A RGGGG C R ASVGSHTR+NNN S G D RG S + I G G G SG R GPRL G + L CGF+ SSP D AAAAVS A R GD GG+ GP IL VLRETAAAGGG R+ +GA
Sbjct: 80 RAVRSLEKRQQHGAFLAWRVAAVNETRRAADISGACARLRAVRKRPGRLQLASAFSIWARLSAASSHSDRHAEIAACTKRQRAVRTCFSTLRSNASLRRRARRALFSLDRRCSLRQLARGWGAMLRAAATASAERRSGLRLSRAEAAVAAGRLATRTRAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGAAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGSRQAHGKAKALTALARASDRRQSDRAEMRLALRTWRRNACGGDGDGGGGRXXXXEPRGGG-MADGLEAMAGAFVEAAAAFSTASSIPEVFTLVEDFVSEVAVSSRGRLLLLNGEPGGGMFCLESDRRAPPDQDPLEASFPIGNGLVARCVATGLAFQT-RRGGNGSTG------GASPPRSSRRLYSTS--------GALDVALAGPADLHALPPQE--------------------------------------------------------------------------------------------------------------------RGYGFVSKSPPXX-------XXXRWWSESXXXXXXXXXXXX--------------------------------------------XXXXXXAWRE--QQHRGDEGHRPPDKGFSGREMAALAVVAGQAAAALRRVGAAASEREEVLEELDAXXADRVDETQKREEAVKEEMKHLREAMEHVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQD-----GDGANPEADDERGRKGGVAPTPC----------------HADRGGGGNGIHRCCRDASVGSHTRHNNNGS---------IGEDMGTRGNSPGATSTIAIFGSEGGGVSGIPGRQ---GPRLAAGGGSAPLSE-CGFKVSPSSPRDKAAAAVSFA-------RSGDDGGGDRFGPEILTVLRETAAAGGGSRVGVGA 878 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.84.9 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig108.84.9 >prot_P-littoralis_Contig108.84.9 ID=prot_P-littoralis_Contig108.84.9|Name=mRNA_P-littoralis_Contig108.84.9|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2273bp MPGRDEEGPSALEALSRNWRSALVVNGLFDALEETERQRDELAQNLSSKHback to top mRNA from alignment at P-littoralis_Contig108:352465..376155+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig108.84.9 ID=mRNA_P-littoralis_Contig108.84.9|Name=mRNA_P-littoralis_Contig108.84.9|organism=Pylaiella littoralis U1_48|type=mRNA|length=23691bp|location=Sequence derived from alignment at P-littoralis_Contig108:352465..376155+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig108:352465..376155+ >mRNA_P-littoralis_Contig108.84.9 ID=mRNA_P-littoralis_Contig108.84.9|Name=mRNA_P-littoralis_Contig108.84.9|organism=Pylaiella littoralis U1_48|type=CDS|length=6819bp|location=Sequence derived from alignment at P-littoralis_Contig108:352465..376155+ (Pylaiella littoralis U1_48)back to top |