mRNA_P-littoralis_Contig1.286.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.286.1
Unique NamemRNA_P-littoralis_Contig1.286.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: A0A6H5KPA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA6_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 2.650e-106
Identity = 199/303 (65.68%), Postives = 236/303 (77.89%), Query Frame = 2 
Query:  143 MNSLRFLRVPFGGGAGGIRLRPAAASSAAAGNNISPGVVERASTADDALRLLQANRSSSXXXXXXXXRCLSTSV-KTKHKDIPRRIYQSAPKRGHGRHSGMKKWS-TAKGAPAPVAPPTGNGEEEEQGEGAQEVVALEKIEGSKRRAAEGGLREVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVDFDEQIKAEPSRYRREKLQARKDNVEQLKADRGEQVYAETV 1045
            M+ LRFLR P GGG GGIR R  +A +AAA    +P +   A+T   ++    A+  S+XXXXXX  RCLSTS  + K++DIP+R+Y+SAPKR HG+H+GMKKWS T +G P   A       E   GE  Q+ +AL  +  S     EG LRE++T LKEIRVSPW+LNLLAKLVRGLPVVEA+AQL FCKKKHTTTV+KAIQNALNLADMRYGL+AEE+EVGEIFVTKGK+VKR+RIMGRGRAGIARRKWSHLNVTL+E+DFD+QIKA PSR RREKL ARKD VEQL+A+RGEQVYAE +
Sbjct:    1 MHRLRFLRAPLGGGIGGIRSRAYSAPTAAASAGNTPCM---AATCSSSIGGSTADTHSNXXXXXXS-RCLSTSANQKKYEDIPKRVYESAPKRRHGKHAGMKKWSATTRGPPPQQAEQXXXXRE---GEVQQKQLALGDVWSS---GNEGSLREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKMVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQIKAAPSRNRREKLMARKDEVEQLRAERGEQVYAEPI 293
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: D8LI12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI12_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.610e-77
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = 2 
Query:  440 MKKWSTAKGAPAPVAPPTGNGEEEEQGEGAQEVVALEKIEGSKRRAAEGGLREVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVDFDEQIKAEPSRYRREKLQARKDNV 997
            MKKWS A   P P        E+E++GE  Q+ +AL  +  S     EG LRE++T LKEIRVSPW+LNLLAKLVRGLPVVEA+AQL FCKKKHTTTV+KAIQNALNLADMRYGL+AEE+EVGEIFVTKGKVVKR+RIMGRGRAGIARRKWSHLNVTL+E+DFD+Q+KA PSR RREKL ARKD V
Sbjct:    1 MKKWSAATRGPPPQ-----EAEQEQEGEVQQKQLALGDVWSS---GNEGDLREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQLKAAPSRNRREKLMARKDEV 178
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: A0A1V9Z481_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z481_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.040e-26
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 2 
Query:  593 REVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            R V T  KEIRVSP  L LLA+ +RGLP  EA  Q+Q+  K+    V K +QNA+NLAD+ YG+    +++ E FV KG  +KR++IMGRGRAGI  R  SHL + LKE D
Sbjct:   47 RTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKAAIVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFD 157
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: K8YXM3_NANGC (Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXM3_NANGC)

HSP 1 Score: 117 bits (293), Expect = 1.630e-26
Identity = 63/144 (43.75%), Postives = 96/144 (66.67%), Query Frame = 2 
Query:  590 LREVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKK-KHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVDFDEQIKAEPSRYRREKLQARKDNVEQLKADR 1018
            +REV +R   IR+SPW +NLL + VRGLPVVEA  QL+F +K K    V+K IQNA NLA++R+ L  E++ V E FV +  + K I  MG+GR G+  R++SH+ V LKE+DF+  + A  +R++R + + R+   ++++  R
Sbjct:   74 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAR 217
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: A0A024G8V2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8V2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.510e-26
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 
Query:  593 REVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            R V T  K+IRVSP  L  LA+ VRGLP  EA  Q++F +K+  T V   +QNA+NLAD+RY +  E +++ E FVTKGK +KR+RIMGRGR+GI    +SHL + LKE +
Sbjct:   62 RTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRATIVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLKEFE 172
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: A0A1V9ZLD6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLD6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.580e-26
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 2 
Query:  593 REVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            R V T  KEIRVSP  L+LLA+ +RGLPV EA  Q+ F  K+    V K +QNA+NLAD+ YG+    ++V E FV KG  +KR++IMGRGRAGI  R  SHL + LKE +
Sbjct:   47 RTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKAAIVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFE 157
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: T0QX48_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QX48_SAPDV)

HSP 1 Score: 114 bits (285), Expect = 6.920e-26
Identity = 63/133 (47.37%), Postives = 81/133 (60.90%), Query Frame = 2 
Query:  527 AQEVVALEKIEGSKRRAAEGGLREVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            A E +AL  +E      A    R V T  KEIRVSP  L LLA+ +RGLP  EA  Q+ F  K+    V K +QNA+NLAD+ YG+    ++V E FV KG  +KR++IMGRGR+GI  R  SHL + L+E D
Sbjct:   30 AAEDIALPSLED-----AADNFRTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKAAIVKKTVQNAINLADINYGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: F0WBS2_9STRA (Uncharacterized protein AlNc14C53G4113 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBS2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.670e-25
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 
Query:  593 REVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            R V T  K+IRVSP  L  LA+ VRGLPV EA  Q++F +K+    V   +QNA+NLAD+RY +  E ++V E FVTKGK +KR+RIMGRGR+GI    +SHL + L+E +
Sbjct:   61 RTVKTIKKDIRVSPRKLTYLAQQVRGLPVEEALLQMKFSRKRRAGIVQTTVQNAVNLADIRYNIEPENLKVAEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLEEFE 171
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: A0A6G0X9R4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9R4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 8.430e-25
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 2 
Query:  593 REVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            R V T  KEIR SP  L LLA+ +RGL   EA  Q+QF  K+    V K IQNA+NLAD+ YG+    ++V + FV KG ++KRI+ MGRG  GI RR+ SHL + L+E D
Sbjct:   57 RSVQTMKKEIRTSPRKLTLLAQQIRGLTATEALTQMQFSPKRKAAVVKKTIQNAVNLADIYYGIEPSALKVEQAFVNKGMILKRIKFMGRGNTGIKRRRHSHLTIVLREFD 167
[Close]
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Match: A0A5D6Y2H8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2H8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.690e-24
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 2 
Query:  578 AEGGLREVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKAIQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKWSHLNVTLKEVD 925
            A    REV T  K+IRVSP  L  LA+ VRGLP  EA  Q++F  K+    V K +QNA+NLAD++Y +  + ++V E FV KG  +KR+RIMGRGR+G+     +HL V L+E D
Sbjct:   58 APAAAREVKTMKKDIRVSPRKLTYLAQQVRGLPAQEALLQMKFSPKRKAAIVHKTVQNAVNLADIKYQIDPQNLQVAECFVNKGHYLKRMRIMGRGRSGVMHHPHTHLTVVLREFD 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPA6_9PHAE2.650e-10665.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI12_ECTSI2.610e-7773.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Z481_9STRA1.040e-2652.25Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K8YXM3_NANGC1.630e-2643.75Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxI... [more]
A0A024G8V2_9STRA2.510e-2652.25Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1V9ZLD6_9STRA2.580e-2653.15Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QX48_SAPDV6.920e-2647.37Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
F0WBS2_9STRA1.670e-2552.25Uncharacterized protein AlNc14C53G4113 n=1 Tax=Alb... [more]
A0A6G0X9R4_9STRA8.430e-2550.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6Y2H8_9STRA3.690e-2448.28Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1314363..1318064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI12
PFAMsRibosomal_L22
Model size1553
Max annot lvl2759|Eukaryota
KEGG koko:K02890
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons4
Evalue8.13e-81
EggNOG OGsCOG0091@1|root,KOG1711@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L22/L17
Ec32 orthologEc-04_002820.1
Descriptionstructural constituent of ribosome
Cds size906
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.286.1prot_P-littoralis_Contig1.286.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1314868..1317922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789319.2880754-UTR-P-littoralis_Contig1:1314362..13148671680789319.2880754-UTR-P-littoralis_Contig1:1314362..1314867Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1314363..1314867 -
1680789319.3456705-UTR-P-littoralis_Contig1:1317922..13180641680789319.3456705-UTR-P-littoralis_Contig1:1317922..1318064Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1317923..1318064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789319.302224-CDS-P-littoralis_Contig1:1314867..13149211680789319.302224-CDS-P-littoralis_Contig1:1314867..1314921Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1314868..1314921 -
1680789319.309936-CDS-P-littoralis_Contig1:1315859..13159711680789319.309936-CDS-P-littoralis_Contig1:1315859..1315971Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1315860..1315971 -
1680789319.3212516-CDS-P-littoralis_Contig1:1316406..13165401680789319.3212516-CDS-P-littoralis_Contig1:1316406..1316540Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1316407..1316540 -
1680789319.3327725-CDS-P-littoralis_Contig1:1317316..13179221680789319.3327725-CDS-P-littoralis_Contig1:1317316..1317922Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1317317..1317922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.286.1

>prot_P-littoralis_Contig1.286.1 ID=prot_P-littoralis_Contig1.286.1|Name=mRNA_P-littoralis_Contig1.286.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MNSLRFLRVPFGGGAGGIRLRPAAASSAAAGNNISPGVVERASTADDALR
LLQANRSSSRSSSSSSSRCLSTSVKTKHKDIPRRIYQSAPKRGHGRHSGM
KKWSTAKGAPAPVAPPTGNGEEEEQGEGAQEVVALEKIEGSKRRAAEGGL
REVSTRLKEIRVSPWSLNLLAKLVRGLPVVEASAQLQFCKKKHTTTVSKA
IQNALNLADMRYGLSAEEMEVGEIFVTKGKVVKRIRIMGRGRAGIARRKW
SHLNVTLKEVDFDEQIKAEPSRYRREKLQARKDNVEQLKADRGEQVYAET
V*
back to top

mRNA from alignment at P-littoralis_Contig1:1314363..1318064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.286.1 ID=mRNA_P-littoralis_Contig1.286.1|Name=mRNA_P-littoralis_Contig1.286.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3702bp|location=Sequence derived from alignment at P-littoralis_Contig1:1314363..1318064- (Pylaiella littoralis U1_48)
CGCTTTCCCAGTTTTCCGGAGCCCCCTTCTGCAAACTCGAAGAACACACC
TCATATTTATAAAAACAGGAGTGTTCAACCAGTCCCGGCTGAACGTGTGC
TTCTGGTTCATCGCATTGACAGCTGCAGCGCAAAGGTTCACTATGAATAG
TTTGCGCTTTCTTCGAGTGCCGTTTGGCGGTGGTGCTGGCGGAATCCGTC
TCAGACCAGCAGCAGCATCGTCAGCAGCAGCAGGCAACAACATCTCGCCA
GGAGTTGTCGAGAGGGCGAGCACCGCTGATGATGCCCTTCGGCTGTTGCA
AGCGAACAGGAGCAGCAGCCGTAGCAGCAGCAGCAGCAGCAGCAGGTGCC
TGAGCACGAGCGTCAAAACAAAACACAAGGACATTCCGAGGCGGATATAC
CAGAGCGCGCCGAAGCGCGGCCACGGAAGGCACTCGGGCATGAAGAAGTG
GTCGACCGCTAAGGGTGCGCCAGCGCCCGTCGCACCACCTACAGGAAATG
GCGAGGAGGAGGAGCAAGGTGAAGGCGCGCAGGAGGTTGTCGCCTTAGAG
AAGATCGAGGGTAGCAAGAGGAGAGCAGCAGAAGGAGGTTTGAGGGAAGT
CAGCACGCGGCTCAAGGAGATCAGGGTCAGTCCTTGGAGCCTTAACCTGC
TGGCGAAGCTGGTGCGGGGCCTGCCTGTGGTGGAAGCTTCTGCGCAGCTC
CAGTTTTGCAAGAAGAAGCACACCACTACTGTCAGCAAAGCCATCCAGGT
GTGTACAGTATACGAGTGTGTGTGTGTTGCCATCTCATCTATTGTAGACG
CTAGTCTGCACCTTCAGGTACAAGTAGGGCGCACCAGCAGGGGTTCGGCG
AGCGGAAAGTGATCACGTACGTTTCCAAAAATCGACTTGGAATTTGCGAC
GGACGACGGCTCGAAACATGTCCTGCTTTGGATGTACTGTACCATGTACG
AAGTGCACATTTCTCGAACATGTCTTTCATGACAAGATTATCGTATATAC
AATGATCCTACTGTATGGATACCGGCTGAGTAAAATAACATGGCGAGCTC
TTCGATGTGAGGATATAGTTACAGCAGTACTTGCAAAACATCAGTTACTG
CTGTACAACAGTGCAGAGCGGTGACAAATGGCTTGGCAGATGCTTTTATG
AAGCATCTGTTCGTACCGCTGCTAGATACTCGTACACATCTGCTGCCAAG
GATTGGACGGAAGGAAGGTTGTTCAAGGGCATGATACGCGGGAGAGACGG
CGTGCGTGTACCGTATTCTCGGTGTCAAGGTCTTGTCTAAATCTCCCACC
CCAGCCCTTCGTCTACAGAAAACTCCCCCCAACTGCCCAGTGTCGCAGAA
CGTCCTCTCAACCCGACCTCCGCACCCCTCTCTCGCTCCCCCCTACACAC
AAGCCTCTTTTCATCCCCACCCGGCCCTCCTTTCCTTCCCTGACATTTCC
TCGTCCTCCGGCACGCCTCTTTTCATTCCGTACCGCCACCCCCGGCCCGC
TGATCCATGCATGCGTTTGAAAAGAACGCCCTCAACCTTGCGGATATGCG
GTACGGGCTGAGCGCGGAAGAGATGGAGGTGGGCGAAATCTTCGTGACGA
AGGGGAAGGTGGTGAAGCGCATCCGGATCATGGGCAGGGGGCGCGCGGGA
ATCGCGAGGTGCGTTTATTCCCCAAAGTATCCTCATGAAGTCAGACTTTC
GAGTTCTTAAAGGGCTGTTCAGAAGGTAAAAATAATATGCAAGGACTTTC
ATCGGGGTTTCACAGGTGCTGTAGTTGATGCCCTTCCGACCGCGCTGTTT
ATCTACCGTGCAGCAGTTTTCGTATCTTCTTTTCCCGCGGTATGTTGGAT
GCACATACTGCCGCGTATTCTTAAATTTCTCGGTTTTCCTTTATTAATTT
ATAGGGAAACTGCTGCGGTGGTAGCTGTACTCTTGCGCGTAGAGGCCGCG
TAGTCTCTTTTCCGCTTAATTCATCGTACTTGGTAGTTGTTTCCGAGTTT
TTTTCTCACATCTCCTCGCTGGATGCGGCTCTCTCTGTCCGCTTCTCTCT
CCCTCTCTTATATTTTGGTGCCTGTATCTTTCGTATGGCCCAGGCGCAAA
TGGAGCCACCTCAATGTGACTCTCAAGGAAGTCGACTTTGATGAGCAGAT
CAAAGCGGAGCCGTCTCGGTATCGGAGGGAAAAACTGCAGGCCCGCAAGG
ATAATGTGCGTTTTTTGGAGGTGTTTGAACAGAAAGGCTGTCGGAGGTGG
GGGGGGGGCAGGGGGAGTGTAATCGTGTGCCTTTGGAGCGGGCGTAAGAT
GGGGCTTCGGTGGGTTCTGGTGTGTGCATTCGAGGTGGGTTTGGTAAGGT
GGGACGATGACGCGAGGTGAGGTTCAGTACAGCAGTAGGGCTGCGGAACG
TAGTACCGCCTGGTAAACACGTTTGGGGATTCCCAGTGTTTAATAACTGA
CTTGTTACGTACGTACCCCGATGAATCGATTGATCTGAGCGTGCTCCGTA
TTTTGAGATGCATTTTGAGCCGTGGAGGAAAAATGATGAGGCCAGGGGAG
GGGGGGGGGAGGGTTCTTGGTAGCGTGGTATTGGCGTCTCGAGAAGGGAG
CTGTGCTTTCCGAAGTGGACGAAGTCATGGAGATTTTTCGATGTGCAAGG
AGCGGGGACAGGGTAGATGGCGTCAATTCGGAAGTTGGGTGGGGGTGGAG
TAGCGTAGTCCTGCAGGACATGGAAGAGGTACAGTACGGAATCCGCGTTC
AGGTTACGACGACTTTCCCAACTTCGTATGCTTGGTATTTTAATGAATCC
GGGCTCTGTGATTGTTTCAGCGTGTGCGTGTGTTTCGTTCGCTTGGTGGT
CGCTGTATTGCATGGTTGGCTTCTTTGGTGTGTGGTGGGCTTGAAAAGAC
AGCGATTTATCTCCACTGCTTTGTGTCGACCGCCTGTCGGAATTAGACGG
TTGGATTAGGGAGGAGTGTTGTGGACTGGGATTTTTCATTGGTAGTTTGC
AGTTTAGAGGTGAAAGTTTTGTCTACGGTACGAATCCCCGCAATGATCAT
CTGGAAGGACGACCCTCAATCGACAAACGCCGCCTACTACACAATATGAA
GTATTTCTTGACAGCAGACCCTCTTTTCTGTTTTTTTTTTCAGGTTGAGC
AGCTGAAGGCGGACCGCGGGGAGCAAGTTTACGCGGAGACCGTGTAGGCA
GAGAATAGTCCCTGGTACTGCATGGAAGGCAGCTACGCAACTGCTGATAT
CGACGGTTTCTACGTGACACGGATGGACGTCTCTCGCTAGAGGAGAAACA
TCGGAGGAATGGAAATACCAGGGGCGGCGAGACAGGAGGCACTGTCAGCC
CCGTGAGAATTATCCCAGAGGGTGCGGATCGGCCCATCGGCGTGAGGCCA
ATGGCTCGTCCTCACGTACGTGCGGAGATCGGGTATCGTCGACAGCAGAG
CACGCTATAAATAGTTGCTTGTGTGGTTCTGGCTCTCTTGTTTTCTCGCT
GTCTGCCTGTGAGATTGTTACCGGTACGAGTATTCGTAGGTCCGTGCACG
ATTTGCGGCACGTGACTGAAGCTCTCTGTTTTCGAGAAGAGTGTGAAAAG
CGCGACGAACCAGGCGTTGTTGTGCTGCTGCCTTTCGTGAGTATGCGCAG
TTGTTAGCGCTGTTTCGATCTCTGGGGAAAATAGTTTTTTTTTAGCTTGA
CA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1314363..1318064-

>mRNA_P-littoralis_Contig1.286.1 ID=mRNA_P-littoralis_Contig1.286.1|Name=mRNA_P-littoralis_Contig1.286.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig1:1314363..1318064- (Pylaiella littoralis U1_48)
ATGAATAGTTTGCGCTTTCTTCGAGTGCCGTTTGGCGGTGGTGCTGGCGG
AATCCGTCTCAGACCAGCAGCAGCATCGTCAGCAGCAGCAGGCAACAACA
TCTCGCCAGGAGTTGTCGAGAGGGCGAGCACCGCTGATGATGCCCTTCGG
CTGTTGCAAGCGAACAGGAGCAGCAGCCGTAGCAGCAGCAGCAGCAGCAG
CAGGTGCCTGAGCACGAGCGTCAAAACAAAACACAAGGACATTCCGAGGC
GGATATACCAGAGCGCGCCGAAGCGCGGCCACGGAAGGCACTCGGGCATG
AAGAAGTGGTCGACCGCTAAGGGTGCGCCAGCGCCCGTCGCACCACCTAC
AGGAAATGGCGAGGAGGAGGAGCAAGGTGAAGGCGCGCAGGAGGTTGTCG
CCTTAGAGAAGATCGAGGGTAGCAAGAGGAGAGCAGCAGAAGGAGGTTTG
AGGGAAGTCAGCACGCGGCTCAAGGAGATCAGGGTCAGTCCTTGGAGCCT
TAACCTGCTGGCGAAGCTGGTGCGGGGCCTGCCTGTGGTGGAAGCTTCTG
CGCAGCTCCAGTTTTGCAAGAAGAAGCACACCACTACTGTCAGCAAAGCC
ATCCAGAACGCCCTCAACCTTGCGGATATGCGGTACGGGCTGAGCGCGGA
AGAGATGGAGGTGGGCGAAATCTTCGTGACGAAGGGGAAGGTGGTGAAGC
GCATCCGGATCATGGGCAGGGGGCGCGCGGGAATCGCGAGGCGCAAATGG
AGCCACCTCAATGTGACTCTCAAGGAAGTCGACTTTGATGAGCAGATCAA
AGCGGAGCCGTCTCGGTATCGGAGGGAAAAACTGCAGGCCCGCAAGGATA
ATGTTGAGCAGCTGAAGGCGGACCGCGGGGAGCAAGTTTACGCGGAGACC
GTGTAG
back to top