mRNA_P-littoralis_Contig108.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig108.69.1
Unique NamemRNA_P-littoralis_Contig108.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig108.69.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.110e-15
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 3 
Query:   39 RQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMIF 197
            +QP MRKDY A  GGVDT DQQNGS+AHDH++C NYWRRVME KIE++   IF
Sbjct:  119 QQPWMRKDYVANIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIF 171
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BLAST of mRNA_P-littoralis_Contig108.69.1 vs. uniprot
Match: A0A6H5KH92_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH92_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.250e-6
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 2 
Query:  410 RQVPAKRTEDGRVWGSVRVKGARDCMNPDCTQRSSSGCSCAE-CKEGGDSGALMCRTCFKNEASHTAPAVARVNG 631
            + VP  +   G+V GSV++K    CMNP C +R   GC+C E C   G +G LMC+TCF +   H A A A  +G
Sbjct:  267 KPVPLAQQPTGKVLGSVQLKSQLLCMNPACPKRKLKGCTCEEFCAFEGQTGVLMCKTCFLDTDRHAAAAEAHWHG 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIY7_9PHAE7.110e-1569.81DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KH92_9PHAE4.250e-642.67DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig108contigP-littoralis_Contig108:222599..223742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1133
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789408.1648352-UTR-P-littoralis_Contig108:222598..2229501680789408.1648352-UTR-P-littoralis_Contig108:222598..222950Pylaiella littoralis U1_48UTRP-littoralis_Contig108 222599..222950 +
1680789408.1962242-UTR-P-littoralis_Contig108:223312..2237421680789408.1962242-UTR-P-littoralis_Contig108:223312..223742Pylaiella littoralis U1_48UTRP-littoralis_Contig108 223313..223742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789408.176666-CDS-P-littoralis_Contig108:222950..2232841680789408.176666-CDS-P-littoralis_Contig108:222950..223284Pylaiella littoralis U1_48CDSP-littoralis_Contig108 222951..223284 +
1680789408.1856456-CDS-P-littoralis_Contig108:223295..2233121680789408.1856456-CDS-P-littoralis_Contig108:223295..223312Pylaiella littoralis U1_48CDSP-littoralis_Contig108 223296..223312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig108.69.1prot_P-littoralis_Contig108.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig108 222951..223312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig108.69.1

>prot_P-littoralis_Contig108.69.1 ID=prot_P-littoralis_Contig108.69.1|Name=mRNA_P-littoralis_Contig108.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MARGLMGRCDVGSLNTGGRRQVPAKRTEDGRVWGSVRVKGARDCMNPDCT
QRSSSGCSCAECKEGGDSGALMCRTCFKNEASHTAPAVARVNGTTGKRRK
KAHGVAQEVKRILFFR*
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mRNA from alignment at P-littoralis_Contig108:222599..223742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig108.69.1 ID=mRNA_P-littoralis_Contig108.69.1|Name=mRNA_P-littoralis_Contig108.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1144bp|location=Sequence derived from alignment at P-littoralis_Contig108:222599..223742+ (Pylaiella littoralis U1_48)
AAAAAGACCGGGAGGATGACGATTCGACGGAGACTACGAGGCAACCAGAG
ATGAGGAAGGACTATTGCGCGTACGCAGGGGGTGTAGACACGGTTGACCA
GCAGAACGGGTCGAACGCGCATGACCATAAGTCCTGCAACAACTACTGGA
GGCGCGTGATGGAACAAAAAATTGAACAATCCCTGCATATGATTTTTTGT
GGTTCAGGAAGTGGGTGCCTGTGCTAAAGTGTGAAGCGCAGAGAAGGGTA
GAGGGCGATGTCGGGGACACGGCGCAAAAGGAAAGGTTGGGGTGTGCAAT
CAGTGAGCTAGGCAGGCTGGCCAAACTAGAGCGGGCTGAGTGGGATAAGG
TTATGGCGCGAGGATTGATGGGAAGGTGCGACGTCGGTAGCCTTAACACT
GGCGGGAGACGGCAGGTGCCAGCAAAGCGTACCGAAGACGGTCGTGTTTG
GGGTAGCGTCAGAGTGAAGGGTGCGCGTGATTGTATGAACCCTGACTGCA
CGCAGAGGTCTTCGAGTGGGTGCAGTTGCGCAGAGTGTAAAGAAGGAGGT
GATTCGGGGGCTTTGATGTGTAGGACATGCTTCAAAAACGAGGCTTCACA
CACGGCCCCGGCAGTAGCTCGGGTGAACGGCACAACGGGGAAGCGTAGAA
AAAAAGCCCATGGAGTGGCTCAAGAAGTGAAAAGAAGTACTTCGAAGTAT
TATTTTTCCGTTGACGTTGATTTCGTCGAAGAAACCATTTAGGTGGAGGG
CTTGACGACAAGAAATGGACCAAATTGTAACGAAACGTTTCTTGGCGCAA
CGCAACTTCGACTGGCAGAAAATACGCGCGTTTCTCTCTGTGTAAAGAAT
AGAAACGTAATGCTGGCTCCGCTTGCCATTGACCACAGCGTGATTACACG
ACTTTGGGGGGGGCAAGCCAGGGGTGGCGGGCGCATGGGCCTGTGTTCAG
GTTGGGTATGCATGCGACCAGTTTATTTTGATGTTTGATCTATCTTTCGT
CAGAGAATATATTTCGCAGGGGAGTATCTGTTGTACTTCGAAGTAGCTTT
TTTCGGGCGTTGTCATGTCCGTGTACACCATTTTTTGGGGGAATGCTTGA
TTCGTTGGTTTGTGTCGCATGCATTGCTCAGTCAGTCGCACACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig108:222599..223742+

>mRNA_P-littoralis_Contig108.69.1 ID=mRNA_P-littoralis_Contig108.69.1|Name=mRNA_P-littoralis_Contig108.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig108:222599..223742+ (Pylaiella littoralis U1_48)
ATGGCGCGAGGATTGATGGGAAGGTGCGACGTCGGTAGCCTTAACACTGG
CGGGAGACGGCAGGTGCCAGCAAAGCGTACCGAAGACGGTCGTGTTTGGG
GTAGCGTCAGAGTGAAGGGTGCGCGTGATTGTATGAACCCTGACTGCACG
CAGAGGTCTTCGAGTGGGTGCAGTTGCGCAGAGTGTAAAGAAGGAGGTGA
TTCGGGGGCTTTGATGTGTAGGACATGCTTCAAAAACGAGGCTTCACACA
CGGCCCCGGCAGTAGCTCGGGTGAACGGCACAACGGGGAAGCGTAGAAAA
AAAGCCCATGGAGTGGCTCAAGAAGTGAAAAGAATATTATTTTTCCGTTG
A
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