mRNA_P-littoralis_Contig108.68.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 280 bits (717), Expect = 6.120e-81 Identity = 143/236 (60.59%), Postives = 173/236 (73.31%), Query Frame = 1
Query: 4 IKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQPSK--EECARNEGVDHFTPLPYEKRKKDREDDDSTETTRQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMIF 705
+K+ A D YCL S+VDGGM+GDPKL + +CPLGRTTR VL VLLG VL +K+DGSGV+IA+D++FTSPTLFECLASHDIFAVGTCR+D+TAGA AYLESL RT+ GDMNFCR+G++A V+W DSKD+ L STIH+AQP+K EE G+DHF PLP R K R + +QP MR DY GVD DQQNGS+ HDHKS N+WRRV + K+EQ+L F
Sbjct: 428 MKLLAACDITSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAG---GIDHFKPLPLSLRAKGRNGEPLD--LQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAF 658
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 268 bits (684), Expect = 3.400e-80 Identity = 142/255 (55.69%), Postives = 175/255 (68.63%), Query Frame = 1
Query: 4 IKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQP-------SKEECARNEGVDHFTPLPYE---------------KRKKDREDDDSTETTRQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMI 702
+K++A+ D + YC +S+VDGGM GDPKL WF+CPLGRTTR VL VLLGA K+DGSGVYIA+D++FTSPTLFECLASHDIFAVGTCRS++T GA YL+SL+R VE G+M+F RAG +AFV+W DSK++ LCS+IHIAQP KE+ + G DHF PLPY +K + S E +QP MRKDY A GGV+T DQQN S+ HDHKS N+WRRV+E K E+ I
Sbjct: 1 MKLFAICDIERYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDS--DGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLEL-QQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNI 252
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 281 bits (718), Expect = 6.870e-79 Identity = 147/257 (57.20%), Postives = 178/257 (69.26%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQP-------SKEECARNEGVDHFTPLPYE---------------KRKKDREDDDSTETTRQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMIF 705
G+K++A+ D +GYC +S+VDGGM GDPKL WF+CPLGRTTR VL VLLGA K+DGSG YIA+D++F SPTLFECLASHDIFAVGTCRS++T GA YL+SL+R VE G+M+F RAG +AFV+W DSK++ LCS+IHIAQP KE+ + G DHF PLPY +K + S E +QP MRKDY A GGVDT DQQNGS+ HDHKS N+WRRVME K EQ+ IF
Sbjct: 829 GMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDS--DGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLEL-QQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIF 1082
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 268 bits (686), Expect = 1.090e-74 Identity = 142/257 (55.25%), Postives = 177/257 (68.87%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQP-------SKEECARNEGVDHFTPLPYE---------------KRKKDREDDDSTETTRQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMIF 705
G+K++A+ D +GYC +S+VDGGM GDPKL WF+CPLGRTTR VL VLLGA K+DGSGV+IA+ + FTSPTLFECLASHDIFAVGTCRS++T GA YL+SL+R VE G+M+F RAG +AFV+W DSK++ LCS+IHIAQP KE+ + G DHF PLPY +K + S E +QP MRKDY A GGV+T D+QNGS+ HDH+S N+WR VME K +Q+ IF
Sbjct: 775 GMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKED--DDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKSLEL-QQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIF 1028
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.750e-71 Identity = 126/240 (52.50%), Postives = 161/240 (67.08%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQPSKEECARNEGVDHFTPLPYEKRKKD-----REDDDSTETTRQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMIF 705
G+K++A+ D GYCLI+++DG +GDP L +CPLG+TTR VL VLL L KL GSGV+IA+D++FTSPTLF CLASH+IFAVGTCRS +T GA Y++SL RT GDM FCR+GEMAFV+W+DSK++ LCST+HI + +E ++HF P+P + K +E D QP MR DY Y GGVD DQQN S+ HDH+S N+WRRV + KI Q L F
Sbjct: 135 GMKLYAVCDRNGYCLINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPRTCGALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEE----GGDINHFKPVPLALKGKGWAGKHKEHD-------QPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNF 363
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 229 bits (584), Expect = 4.750e-65 Identity = 111/167 (66.47%), Postives = 133/167 (79.64%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQP--SKEECARNEGVDHFTPLP 495
G+K+ A D GYCL S+VDGGM+GDPKL + +CPLGRTTR VL VLLG VL +K+DGSGV+IA+D++FTSPTLFECLASHDIFAVGTCR+D+TAGA AYLESL RT+ GDMNFCR+G++A V+W DS D+ L STIH+AQP KEE G+DHF PLP
Sbjct: 144 GMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSNDIFLISTIHVAQPVKGKEEAG---GIDHFKPLP 307
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 218 bits (554), Expect = 5.890e-60 Identity = 106/167 (63.47%), Postives = 130/167 (77.84%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQPSK--EECARNEGVDHFTPLP 495
G+K+ A D GYCL S+VDGGM+GDPKL + +CPLGR TR VL VLLG VL +K+DGSGV+IA+D++FTSPT+FECLAS+DIFAVGTCR+D+TAGA AYLESL RT+ GDMN CR+G++A V+W DSK + L STIH AQP+K EE G+DH PLP
Sbjct: 158 GMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADAYLESLGRTIPNRGDMNLCRSGQVACVQWADSKGIFLISTIHFAQPAKGKEEAG---GIDHIKPLP 321
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5JVE2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE2_9PHAE) HSP 1 Score: 197 bits (501), Expect = 7.000e-55 Identity = 102/197 (51.78%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQPSKEECARNEGVDHFTPLPYEKRKKDREDDDSTETTRQPEMRKDYCAYAGG 591
G+K +A D GYCLI+++DG +GDP L +CPLG+TTR VL VLL L KL GSGV+IA+ ++FTSPTLF CLASHDIFAV TCRS +T GA Y+ESL T+ GDM FCR+GEMAFV+W+DSK++ L ST+HI + E G++HF P+ + K R QP MR DY Y GG
Sbjct: 108 GMKQYAASDRNGYCLINSIDGSFKGDPSLGPLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMANYFTSPTLFACLASHDIFAVATCRSPRTCGALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVHIGETGGE----GGGINHFKPVLLALKGKGRAGKHKEHD--QPVMRMDYVKYMGG 298
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE) HSP 1 Score: 192 bits (487), Expect = 1.160e-53 Identity = 102/175 (58.29%), Postives = 126/175 (72.00%), Query Frame = 1
Query: 202 IDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQP-------SKEECARNEGVDHFTPLPYEKRKKDREDDDSTETTRQPEMRKDYCAYAGGVDTVDQQNGSNAHDHKSCNNYWRRVMEQKIEQSLHMIF 705
++ +FTSPTLFECLASHDIFAVGT R +TAGA +L+SL+R V+ GDM+F RAG +AFV+ DSKD+ LCSTIH+AQP KE+ + G DHF PLPY RK ++ + +QP MRKDY A GGVDT DQQNGS+AHDH++C NYWRRVME KIE++ IF
Sbjct: 1 MNKYFTSPTLFECLASHDIFAVGTYRVKRTAGAIPFLQSLDRIPVKRGDMHFARAGNIAFVQRLDSKDIILCSTIHLAQPRAAIGEPKKED--DDGGDDHFAPLPYSLRKAGQKG--KSMELQQPWMRKDYVANIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIF 171
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Match: A0A6H5KH92_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH92_9PHAE) HSP 1 Score: 191 bits (485), Expect = 9.020e-52 Identity = 92/165 (55.76%), Postives = 116/165 (70.30%), Query Frame = 1
Query: 1 GIKIWALRDHKGYCLISNVDGGMQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFTSPTLFECLASHDIFAVGTCRSDKTAGATAYLESLNRTLVELGDMNFCRAGEMAFVRWKDSKDVTLCSTIHIAQPSKEECARNEGVDHFTPLP 495
G+K +A D GYCLI+++DG GDP L +CPLG+TTR VL VLL L KL GS V+IA+D++FTSPTLF CLASHDIFAVGT RS +T GA Y+ESL RT DM FCR+ EMAFV+W+DSK++ LCST+HI + +E G++HF P+P
Sbjct: 110 GMKQYAASDRNGYCLINSIDGSFTGDPSLRPLEDCPLGKTTRHVLHVLLEECETLRGKLVGSSVFIAMDNYFTSPTLFTCLASHDIFAVGTWRSPRTCGALPYMESLGRTTPNPDDMTFCRSVEMAFVQWRDSKEILLCSTVHIGETGEE----GGGINHFKPVP 270 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig108.68.1 >prot_P-littoralis_Contig108.68.1 ID=prot_P-littoralis_Contig108.68.1|Name=mRNA_P-littoralis_Contig108.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp MQGDPKLHQWFNCPLGRTTRQVLWVLLGASPVLSKKLDGSGVYIAIDSFFback to top mRNA from alignment at P-littoralis_Contig108:221763..223858+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig108.68.1 ID=mRNA_P-littoralis_Contig108.68.1|Name=mRNA_P-littoralis_Contig108.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2096bp|location=Sequence derived from alignment at P-littoralis_Contig108:221763..223858+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig108:221763..223858+ >mRNA_P-littoralis_Contig108.68.1 ID=mRNA_P-littoralis_Contig108.68.1|Name=mRNA_P-littoralis_Contig108.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig108:221763..223858+ (Pylaiella littoralis U1_48)back to top |