mRNA_P-littoralis_Contig108.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig108.71.1
Unique NamemRNA_P-littoralis_Contig108.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig108contigP-littoralis_Contig108:255960..256547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789407.1858227-UTR-P-littoralis_Contig108:255959..2560901680789407.1858227-UTR-P-littoralis_Contig108:255959..256090Pylaiella littoralis U1_48UTRP-littoralis_Contig108 255960..256090 +
1680789407.209244-UTR-P-littoralis_Contig108:256390..2565471680789407.209244-UTR-P-littoralis_Contig108:256390..256547Pylaiella littoralis U1_48UTRP-littoralis_Contig108 256391..256547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789407.1966274-CDS-P-littoralis_Contig108:256090..2563901680789407.1966274-CDS-P-littoralis_Contig108:256090..256390Pylaiella littoralis U1_48CDSP-littoralis_Contig108 256091..256390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig108.71.1prot_P-littoralis_Contig108.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig108 256091..256390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig108.71.1

>prot_P-littoralis_Contig108.71.1 ID=prot_P-littoralis_Contig108.71.1|Name=mRNA_P-littoralis_Contig108.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MTDVYEQPVESEVDAGNGSSGEEDDDASSDDGDDGWNSCVLRQQQLLRQR
GGVVESMDPSERGFGGLGGGDGDPNAGTFSQLMHPFDRGKSSHLRRFVW*
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mRNA from alignment at P-littoralis_Contig108:255960..256547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig108.71.1 ID=mRNA_P-littoralis_Contig108.71.1|Name=mRNA_P-littoralis_Contig108.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig108:255960..256547+ (Pylaiella littoralis U1_48)
GAGGACATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCACGGTGCG
AGAAACACTGACGACGACGGGCGAGAGTACGTTGCGGCCGTCTCGACAGG
CCCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAGATGTGTATGAGC
AACCAGTTGAGTCGGAGGTGGATGCAGGGAACGGCAGCAGTGGCGAAGAG
GATGATGATGCTAGTAGTGATGATGGCGATGACGGTTGGAACAGCTGTGT
TTTGCGGCAGCAGCAGTTACTGCGGCAACGCGGCGGCGTGGTGGAGTCCA
TGGACCCATCGGAGAGAGGTTTTGGCGGTTTAGGGGGCGGCGACGGTGAC
CCCAATGCTGGGACGTTTTCGCAGCTCATGCACCCGTTTGATCGGGGCAA
GAGTTCGCATTTGCGGCGGTTTGTATGGTGATGAACTTCATGCTCGGGGA
ACAATTATGAGTGGTACACGTCCATTTGATCGGGCCAATGGCTTCGGTGA
TTGCAGCATGAAGGATGGCGGGCTTCGTGCCGGGGGGCAGTGTTTTGGAG
TGACAGCGCGGGTGCGGCCGCAACAGGTGCAGGAGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig108:255960..256547+

>mRNA_P-littoralis_Contig108.71.1 ID=mRNA_P-littoralis_Contig108.71.1|Name=mRNA_P-littoralis_Contig108.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig108:255960..256547+ (Pylaiella littoralis U1_48)
ATGACAGATGTGTATGAGCAACCAGTTGAGTCGGAGGTGGATGCAGGGAA
CGGCAGCAGTGGCGAAGAGGATGATGATGCTAGTAGTGATGATGGCGATG
ACGGTTGGAACAGCTGTGTTTTGCGGCAGCAGCAGTTACTGCGGCAACGC
GGCGGCGTGGTGGAGTCCATGGACCCATCGGAGAGAGGTTTTGGCGGTTT
AGGGGGCGGCGACGGTGACCCCAATGCTGGGACGTTTTCGCAGCTCATGC
ACCCGTTTGATCGGGGCAAGAGTTCGCATTTGCGGCGGTTTGTATGGTGA
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