mRNA_P-littoralis_Contig108.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig108.65.1
Unique NamemRNA_P-littoralis_Contig108.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig108contigP-littoralis_Contig108:215118..221340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size242
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789406.9661138-UTR-P-littoralis_Contig108:215117..2151181680789406.9661138-UTR-P-littoralis_Contig108:215117..215118Pylaiella littoralis U1_48UTRP-littoralis_Contig108 215118..215118 +
1680789407.0015376-UTR-P-littoralis_Contig108:221312..2213401680789407.0015376-UTR-P-littoralis_Contig108:221312..221340Pylaiella littoralis U1_48UTRP-littoralis_Contig108 221313..221340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789406.9795427-CDS-P-littoralis_Contig108:215118..2151771680789406.9795427-CDS-P-littoralis_Contig108:215118..215177Pylaiella littoralis U1_48CDSP-littoralis_Contig108 215119..215177 +
1680789406.9919667-CDS-P-littoralis_Contig108:221158..2213121680789406.9919667-CDS-P-littoralis_Contig108:221158..221312Pylaiella littoralis U1_48CDSP-littoralis_Contig108 221159..221312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig108.65.1prot_P-littoralis_Contig108.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig108 215119..221312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig108.65.1

>prot_P-littoralis_Contig108.65.1 ID=prot_P-littoralis_Contig108.65.1|Name=mRNA_P-littoralis_Contig108.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MTASRARVLCPACHSENDEVFSFLPMVQDFGFGLLSYRQRGNTFDDRRSC
YFATVQAVYHGVGRESFGEE*
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mRNA from alignment at P-littoralis_Contig108:215118..221340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig108.65.1 ID=mRNA_P-littoralis_Contig108.65.1|Name=mRNA_P-littoralis_Contig108.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6223bp|location=Sequence derived from alignment at P-littoralis_Contig108:215118..221340+ (Pylaiella littoralis U1_48)
AATGACTGCATCACGAGCGAGAGTATTATGCCCCGCATGTCACAGTGAGA
ATGATGAAGTGTCATGGGCGGTCCATAGGGGACGTCCGTTCGTGTAAGGT
CTAGGTAGGGTGTTGATTCGGTTTGCGTGGCCCCTCTCGGGTGCGCGAAA
TACCCACCAAGGATCAGTGATATGAAGTGATGTGAATTGATGAGAAACCT
TGAGCACTTTTGGAAACTGAGCTAAAGCATTACGGAAGCTTGAGCACACA
CACGGAGATCAGAGGGCTAAACTGGTGCACACACTTGCACACACGCGAGG
TGCGCTCCGGACAGCACTCTATCGAGCTCGGCAGGAAGGGGAACACACGC
TCTCGCAAAGGTCTGATACGTATTCCCATTTATGCGTGCGGTTTATCACA
CACTGGCTGCCAGCAACGCTGCCAGCTGAACATTCGGCCTTGTGGAGGAT
GCTGTGTGTGGGTTCCCCACCTGTGATATGGTGTCCAATCCGAGAACACC
TGTGATATGGCGTCCAATCCGAGAACACCTGTTATATGGTGTCCAACGAG
AATGAATCGTAGTGCTATCAGGAGTCTGGAGTGCTGACCGCGCTTGCTTG
CGGCCATTTCGCACGCGTGCAGCCTGCGCAAACGGCTTCTTGCAGCATGC
GCAAACGGCTTCTTGCGATGCGGAGGCCTGGGCGGGACGCTGTACGCATT
TGCCGGTTCTTGGTGTGGTGGCGGGACGTTGTCCCCGCGGCTGCATCTGA
CCTGCTGGCTGGCCTGTTGCGCTGTGGCTGCCTGAGCGGGACGCTGTCCC
CTCTTAGGCATCTGCCGTTTGCTGGTGTTGCAGCGGGACGTTGTCCCCGC
GGATGCACCATTGCGCGTCCCAGCTCTCTCGTGCCTGCGAGCACGCGTTT
TTTTCGGAAAGCTATGACCCTCTCTCGCGGGGTCCCCGCGTGGCTCTCCT
GTGGGATACTTGGCTGGGTGCTGTCGCCATGTGCGCGACTGCGTATGCAC
TTTGCTGTGCATGATTGCACAGCACAGGCCTCAGCTGGTATTCTGCTGTG
CTGCGAAGCAGCCGCGTGCTGCGGTACTGCGGAAGAGCTGCGTTGCAGAG
CAGCTGTGGCGCTTCACTACCTTGTTTTTTTTGTGTTCCTTCTTTACTGT
AACACACTGTGTATTGCAAGATGTTTTTGTCGTTTTGTTTTGTGTTCTCT
TTGACTACTGCTGTATACTGTATTACTGCTGTATATCGAAATTTGCGTTG
TTGCTTTTTTTTTGTATTCTCTCCTACTACTAAACTTGGTATTGCAAGCT
GTTTCTGCTGTATGCTCCTCTCTATCTCCACCGTAGACGAACCTGTTTAT
GCTGTATGATTCATCTGCCACAGGCATCGCAGTGAGTTGCAGCCGTCTGC
TACAGCTGTTGCTGTTGTCCTGTGGTTGTCATGTGTGTCGATGCGAATAG
TGCTTCCACCATGCGTGTAGCACTGATTTTTCGCTCCTTTGTTTTTCACC
TGTCTTCGTTCCATATTCACCACGCGTGTGGCACTGATTTGTTTCCCTTT
ATTGTTCACACCTGTTTTTGCTCCACTGTCTCGTTCTATTTTTTTGGGGG
GGGATGTGATCCGTTGTTTCACGAGCCTGTGGGTGGCGCAGTGCCTGTGC
GTCAAGAAGAAGGACGGCACTGTCCGTCTGTGCATCGACTGGCGCGTGCT
TAACAAGCAACTGGTAAGCGATTCTGGTGGTTTGGGGGACATGCAGTCGA
TTTTCGACGGGTTGAAAGGCAAGCGGTATTTCACTCAGTTGGACTTGGTG
AGTGGGTTCCATCAGATTGAAATCGCTGAATCTGATCGCTTCAACACGGC
GTTCCGTGATGCGGATGGCATGCTTTGGGAGTTCACGCGTGCGGGTTTTG
GTTTGACGGTGTTGCCAGCGGCGTTCAGTAGGAGAGTGAAGTCTGCGCTG
GGCCACATCGACGGCGTGTTTAGCTGACTAGATGGCATTCTGATTGCGAG
CTCTACCTGGGAGGAACATTTAGCTACGATCACGTTGGTGTTCAGTCGGT
TGCTGGCGGCCGGTCTGTCTGTAAACTTTGCGAAACGCATCTTCGGTGCT
GCTTCACAAGAGTTTTTGGGCATGGTCATCGATAGCACAGGCATTCGCCC
CGCGCCATCGAAGTTGAGGGCAATCGCCGACATGGCTCGCCCCACTAACG
TCGAGGAGCTTCGCACTTTCCTTGGCATGACGGGATACCTCAGGCAGTTT
GTTCCTCTGTACAGCGTCACCGCCGCACCATTGACTAACATTCTTCGCCA
CAAAGAATTCGCATCGAAGCGTGCTCGAAAGTGCAGGATTCCGTGGGGTG
AGCAAGAGGAAGAGGCCTTCTAGCTGCTGCGAGAGTCGCTAGCTTCGCCT
TTGGTCCTCGTGTTTCCCGACATGAACAACACCTTCGAGCTGCACACAGA
CGCGAGCACCACCGGAGCGGGGGCTACTCTCATGCAAGCGGTTGGTGAGG
TACCTCGGGTGGTTTCTTTTGCAAGTCATAGGTGGTCGCGGACGGATTCG
CGAAGGGGTCCGACAGAGCGAGAGTGCATGGCTATTCTGTGAGCAGTTGA
CCACTTTCAAGCCATATTTGGCTGGGAGAGCGTTCAGGCTGGTGACGGAT
TGCTCAGCGTTGACGTGGTTGTTTCGGAGTAGGGAGCTTTGCCCAAAACT
CCACCGTTGGGCTCTGCGCTTGATGGAGTATGACATTATCATGGTGTGGA
AGGCTGGTGTAAAGCACGTGTTGCCAGATGCGCTTTCTCGTTTACCGCAC
TCGGCGGAGCCGCAGGATGATGTAGACGACTCCTTTCCTGACGATGCCAC
TTCCAAAGCCCCGTCTGACTATGTAGGGCCTCAGGGGCCGACGTTGGATG
GTGTTCCCTTGGTAAACCTGGTAACCTATGGCCCTGATGATGAAGTGGTC
ATGTCCTCAGATGAGATCCATGCTTCCTCGGATGAGACCCATGCTCACAT
GATCTCTGCCTTGCAAGCCCTGCCGTTTGCCTCTTGTGCGACGTTAGAGA
CCCAGCAAAAAGGTCTCCGGCGATCGACGAGGAGTCGTGCTCGTTCCGTC
TGTCTCCGGTCTCCCGGTGAGCCCCCGCTGGCCCTCCCGGATCTACACGA
GTGTTCCGGCCGTCCGTCTTATTCCCCGACCGAGGTGGATTCCATGGTTG
CGACGCCCCGCACGATCCCGTCATCGGTGATCTCCCCGGAGGACGACGAC
GACGTACAGCAAGTGCTCTCGGCAGGGGGGGACGTGGCGCCGTCGTCTGC
AGAGGTCGTCAGTACAGCTACGATGCCGGCTTTCCGAAAGGCGCTGAAAC
TCCTGCCCGACCCAGCAGCACTGGTGCGGAGGCAGCAGGACGACCCGCAC
TTGACCCAGGTTTGCAAAGACTTGTCGAATGAGGAGAACAGAGCTGGGGA
GGACAAGAGACACGGTTATTGCCTGGATGACAGTGGAGTGTTACTGGTGG
GACGGGAAGGAAAGGAATTGCCAGTCATTCCACTGTCGATGGTGCCTAAT
GTTATTGCCTTGGTGCACCTGTTTCACGGCCACGCAGGAGTAGGAGCCAC
CTTACATCTTGTGAGGAGGTACTTTTTCTGGTCGCACATGGCTCGTGATA
TCCGTCACTATGTCCTGTCCTGTGGTTGCCGTAGGCGTAAGAGACCAACC
AGTAGGCGCGTAGCGATGCTTCCTGGTAGACCATTCGCACCTTGGGAGGA
AGTGCAGATGGATATCTTGAAAATCGACGTTCCCTCTCAGTCAGGCAACA
ACCACATCCTACTTGTAGTAGATCGCGCCTCAAAGTTCCCGTTCGGTTTT
CCCTTGAAGACCAAGCAGGCAGTAGGTGTGGCTCTGTCGTTGGATGCAAG
CAGACATTCGCTTTGGTCCCGCAGATCACCCGCGAGGGCAAGGTGCTGTT
GAGAGGCTAGGAGGTTGGCTGCAAGAGATGTTGTCGGAACTCTGCAAGTC
TTGGCCTGGCCGTTGGGACGAGTACGTCAGTCCAGCTCTCTGGATGAAGC
GTACTCTACCCGACGTGTCCTTGCCTGCTAACATGTCTCCTTTCGAGCTG
CTGCTCGGTAGGCCCCCTCGTACGTCGTTGGACTCGCTTCTCGCCGATGA
GACAGATAACACGAGAGGCTTGGACAATTTCGTCGAGCAGAGGAGACAGA
ACATGTCAGAAGTGCGGCAGGCGATGAAGAGACGCGACGAGATCAGGATG
GCCGCTCGAGAGAAGGCCAACGCTTCCATCTCCCGACCCTCGGCTGGAGT
CTCTGCAGATCGTGACAGCTTGGTGCTGGTGCGGACACCTGCTAGCTTGA
GACACCGAGACTGCCGCGGGATGAAGCTGCAGCACGACGTGTACAACGGG
CCTTGGACCGTCGTGGAAGTGCTGGAAAAGGGGCTGAGTGTGCAAGTCGA
GATGAGGGGACTCAGGCCACGTGGCCGTAGGGTGTCGGCTGCTGATGTAA
AACCTTTTCATGTACGGCCGGTCCACTTGCGCCACAAAATCGGGGACGAG
TTTGCTCAGTATGCTTGGGGAGGCCGACTTCCGATTGCCTGAATCTTCAG
ATTTGCAACCCAAGTACCAAACCCTGATAGATTGCCGCCAATTTGCCACT
CAGACGGGAAGGTTAAAGTGGGAGTTCAAAGGGTTGACACCGAGCGGAAC
TGAATCGGAGTGGAGATCTGAGAAGGAGATGCTTGACACTTTCACACCGC
TTCAGTTGGACGTTTCTGTTGCACTTTGGCACTTGTACCACCCAGATGCC
CCCGCTCTCAAGCCTCCCTCCCCGCCGAACCCTCTGTCTCGTTCTGAAGC
CCTACGCATGTTCCCAATAGATTTCGTGGTATGGAAGCGTTTCGCCGACG
ACACCCGCCTGAAGGGACAGGCGTATGACTTCAAGGCGCCTTACTGGAGA
GTGCGCTACTCAGACGGGAACTGGGAGGACCTGACCCGTACGGAGTTGCA
GAAGCTGGTGCAGTAGTACTGCATCTTCGCTCGGGGCCGGGGCAACAGCC
GGAGCGACTTCAGCGGAATTCCGGAGTTATGTGGTGGATTGGATGGGGTT
GGTCGCTGGGTACGTTGTGGTGGAGATTGGATACTAGAAGGCCATGGTCT
GTCTCGTAGGGAGAGTTGTGCGGTAACGCCTCCAATGATTTGTTCGGCGG
CGATTGGTGGAATTTGCGCTGCGTTGCCGCTGCGGAATTTTTGCCGCGTT
GCCGTTGCAACTTGTCCTGCCTTGGTCTTTTTAGTACAGCCGTCGTAGTT
TGCGGACAGCGCCGGTTTGTGTGCTGCGGCGGGTTCTTCCCTTTGGGGTT
TTCCTTCCGCAATCAAGTGCACGGTGTATGGCATATCGTAGGGGGTCGGT
TGGTGCGTACTGGTGTGCAGTGCTAGCTATGGGGCACATAGGGAAGGCGG
TTTTCCGTGGGAGTTTTTACGCCTTATTCAAACCCTAGGTGTCCGGCTCA
GCAATCCCAAGTACTGCCTTAAATTGGGGTTGTTCCTTGCGGGACAATTT
TCAGGCCAGTATGCTAGGTAGTGTTCCGCCCTGCTGGCAGAGCATTACAA
TGCTGGGGGGGGTGTTACGGGCGGTCCATAGGGGACGTCCGTTCGTGTAT
TTTGTAACGTCCAGGTAGGGTGTTGATTCGGTTTGCGTGGCCCCTCTCGG
GTGCGCGAAATACCCACCAACGGTCAGTGATATGAAGTGATACGAGTTGC
TACGAAACCTTAAGCACTTTTGGAAACTGAGCTAAAGCATTACGGAAGCT
TGAGCACACACACGGAGATCAGAGGGCTAAACTGGTGCACACACTTGCAC
ACACGCGAGGTGCACTCCGGACAGCACTCTATCGAGCTCGGCAGGAAGGG
GAACACACGCTCTCGCAAAGGTCTGATACGTATTCCCATTTATGCGTGCG
GTTTATCACACACTGGCTGCCAGCAACGCTGCCAGCTGAACACTCGGCCT
TGTGGAGGATGCTGTGTGTGGGTTCCCCACCTGTATAGAAGATTTTCGTT
TCTGCCAATGGTGCAGGACTTCGGTTTCGGATTACTGTCGTACAGACAGC
GAGGCAACACCTTCGACGATCGACGAAGCTGCTATTTCGCAACGGTACAG
GCAGTTTACCACGGCGTGGGCAGAGAAAGCTTCGGTGAAGAGTAGGTCAG
CAACATGGGTCCTGTTCAGTAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig108:215118..221340+

>mRNA_P-littoralis_Contig108.65.1 ID=mRNA_P-littoralis_Contig108.65.1|Name=mRNA_P-littoralis_Contig108.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig108:215118..221340+ (Pylaiella littoralis U1_48)
ATGACTGCATCACGAGCGAGAGTATTATGCCCCGCATGTCACAGTGAGAA
TGATGAAGTATTTTCGTTTCTGCCAATGGTGCAGGACTTCGGTTTCGGAT
TACTGTCGTACAGACAGCGAGGCAACACCTTCGACGATCGACGAAGCTGC
TATTTCGCAACGGTACAGGCAGTTTACCACGGCGTGGGCAGAGAAAGCTT
CGGTGAAGAGTAG
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