mRNA_P-littoralis_Contig1.279.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.279.2
Unique NamemRNA_P-littoralis_Contig1.279.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI)

HSP 1 Score: 544 bits (1401), Expect = 3.010e-189
Identity = 263/284 (92.61%), Postives = 276/284 (97.18%), Query Frame = 3 
Query:  234 MFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSETFTTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            MFN SSDFQHVQVVETAPFGKTLVLDGKTQSA+LDEFIYHETLVHPAMLAH +PKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRL+LHYTDAHAFLRE+E MYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVF+HVSMSVADVPSFGCCWGFNLASDS TF TE+YRRK+ AATD+DI ARI+G LRFYDG+THGGLFGVPKWLRAA+EEEERIMTI++PVFMY
Sbjct:    1 MFNASSDFQHVQVVETAPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEEEERIMTIDSPVFMY 284
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA)

HSP 1 Score: 403 bits (1036), Expect = 6.440e-133
Identity = 196/316 (62.03%), Postives = 243/316 (76.90%), Query Frame = 3 
Query:  165 TSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGM-YDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSETFTTEDYR--RKDPAATDADIAARISG-------ELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFM 1082
            TSSFWF EDV++++  + RLN IM+NG S FQ +QV++ APFGKTLVLDGK+QSA  DEF+YHE LVHPAML H +PKRV+IGGGGE ATARE+LRH+SVEKC+MVDLDK+VVD S+D LPEWGAG  DD RL+++Y DAHA+LR+ +G  +DVI MDIADPIEAGPGY+LYT+EFY++ATT+L+ GG++VTQSG  +++  +ECFTVIH+TL S FKH      DVPSFGC W F LA ++     +         AATDA IAARI G        LRFYDG  H G+FG PKWLR A++ E R+MT++NPVFM
Sbjct:   43 TSSFWFSEDVTDDMVTKFRLNNIMYNGKSQFQRIQVIDCAPFGKTLVLDGKSQSAAGDEFVYHEALVHPAMLLHGNPKRVFIGGGGEGATAREMLRHRSVEKCIMVDLDKMVVDVSKDKLPEWGAGCWDDDRLEVYYQDAHAWLRDYKGPPFDVICMDIADPIEAGPGYVLYTEEFYRYATTQLAEGGIIVTQSGPGSLNTHEECFTVIHRTLASAFKHAVPYTVDVPSFGCTWAFTLAFNACAGAADAAAVVEMSVAATDAAIAARIGGGGSSGSSALRFYDGAAHLGMFGTPKWLRRALDAERRVMTVDNPVFM 358
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A2D4BNJ7_PYTIN (Spermidine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNJ7_PYTIN)

HSP 1 Score: 383 bits (984), Expect = 1.570e-125
Identity = 183/322 (56.83%), Postives = 241/322 (74.84%), Query Frame = 3 
Query:  126 ADSGEKGSTKPPTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSE--TFTTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            A+S    S+  P   SFW+ E ++E+L + + L ++MF  +S FQ +Q++ET  FGKTL+LDGKTQSA+ DE +YHE+LVHPA++AH +PK VYIGGGGE ATAREVL+H SVEK VMVD+D++V D  R  LPEW  G  +DPRL++HYTDAHAFL+E +G +DVIIMDIADPIEAGPGY+LYT+EFYK+A T+L+ GG  VTQSG  A++  DECF+ IH TLK+ F  V     D+PSFGC W FNLA+++     T    R++  A TDA + ARI+  L+ YDG++H GLFGVPK +R A++ E R++T++NPVFMY
Sbjct:    9 ANSSSSASSLAPLERSFWYKESLTEDLYISTTLKRVMFEAASKFQTMQIIETTSFGKTLLLDGKTQSAKXDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHPSVEKVVMVDIDEMVCDLCRKELPEWSDGCFEDPRLEVHYTDAHAFLKEYDGTFDVIIMDIADPIEAGPGYVLYTEEFYKYAVTKLNAGGFFVTQSGPGALYNWDECFSAIHSTLKTAFNTVLPYTVDIPSFGCQWAFNLATNATDAAATGVAIRQRPIAETDALVKARINKPLKHYDGLSHLGLFGVPKPIRDALDAETRVITVDNPVFMY 330
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A7S2V6Z8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z8_9STRA)

HSP 1 Score: 382 bits (981), Expect = 2.140e-125
Identity = 190/308 (61.69%), Postives = 228/308 (74.03%), Query Frame = 3 
Query:  165 TSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSETFTTEDYRRKDPAAT-DADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            TSSFWF E+V+ N  +  RL KI+ +  S+FQ VQ++ET  FG TLVLDGKTQSA  DEFIYHE LVHPAML H +PK+VYIGGGGELATARE LRHKSVE+ VM DLDK+VVD S + LPEW AG   DPRL+L Y DAHA+L  N+  +DVIIMDIADPIEAGPGYILYT+EFYK+A TRL+PGGVLVTQSG  +     ECFT IH TLK  F  V      +PSFGC W FN+AS      T+ Y    P    D +I+ RI GEL+FYDG++H G+FG PK++RAA+  ++R++T +NPVFMY
Sbjct:    2 TSSFWFKEEVTVNHAMSMRLQKIILDQQSEFQRVQIIETNEFGTTLVLDGKTQSALRDEFIYHECLVHPAMLLHPNPKKVYIGGGGELATAREALRHKSVERVVMCDLDKMVVDVSMEHLPEWNAGCHLDPRLELAYGDAHAWLLNNDEQFDVIIMDIADPIEAGPGYILYTEEFYKYAMTRLTPGGVLVTQSGPGSNTTHGECFTAIHNTLKQAFPTVIPYTVSIPSFGCDWAFNVASIDSGVDTQAYGVGKPMGDLDEEISKRIDGELKFYDGVSHVGIFGTPKYIRAALAADKRVITKDNPVFMY 309
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: K3WN33_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WN33_GLOUD)

HSP 1 Score: 379 bits (973), Expect = 6.580e-124
Identity = 180/314 (57.32%), Postives = 235/314 (74.84%), Query Frame = 3 
Query:  150 TKPPTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSETF--TTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            T  P   SFW+ E ++E+L L + L K+ F   S+FQ +Q++ET  FGKTLVLDGKTQSA+ DE +YHE+LVHPA++AH +PK VYIGGGGE ATAREVL+HKSVEK VMVD+D++V +  R  +PEW  G  +DPRL++HYTDAHAFL++ +G +DVIIMDIADPIEAGPGY+LYT+EFYKFA T+L+ GG  VTQSG  A++  DECF+ I+ TLK+ F  V     D+PSFGC W +N+A++ E         R +    TDA + ARI   L+FYDG++H GLFGVPK +R A+E E+R++T++NPVFMY
Sbjct:   15 TLAPMERSFWYKEALTEDLYLSASLKKVTFEAQSEFQTMQIIETHSFGKTLVLDGKTQSAKTDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDEMVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTEEFYKFAVTKLNKGGYFVTQSGPGALYNWDECFSAIYSTLKTAFNTVLPYTVDIPSFGCVWAYNMATNHEDGDKALNAIRSRAIEETDAIVTARIPQPLKFYDGLSHLGLFGVPKPIRDALENEKRVITVDNPVFMY 328
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A6A4DP37_9STRA (PABS domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DP37_9STRA)

HSP 1 Score: 376 bits (965), Expect = 1.200e-122
Identity = 182/313 (58.15%), Postives = 234/313 (74.76%), Query Frame = 3 
Query:  159 PTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSE----TFTTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            P   SFW+ E ++E+L L + L  + F   S FQ +Q++ET  FGKTLVLDGKTQSA+ DE IYHETLVHPA+LAH +PK VYIGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  LPEW  G  +DPRL++HYTDAHAFL++ +G +DVIIMDIADPIEAGPGY+LYT+EFYK+A T+L+ GG +VTQSG  AV+  DECF+ IH TLK+ F  V+    D+PSFGC W FN+A++ E           R +  A T++ I +RIS  L+F DG++H GLFG+PK +R ++E E R++T++NPVFMY
Sbjct:   20 PMEKSFWYKEALTEDLYLSAALKTVTFEAKSKFQTMQIIETHSFGKTLVLDGKTQSAKNDEAIYHETLVHPALLAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKELPEWNDGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTEEFYKYALTKLNKGGFMVTQSGPGAVYNWDECFSSIHCTLKTNFNTVAPYTVDIPSFGCIWAFNMATNVEDGDGVAAVTAIRERSIATTNSLIESRISKPLKFLDGVSHMGLFGLPKIVRESLENETRVITVDNPVFMY 332
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A8K1CQB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQB7_PYTOL)

HSP 1 Score: 372 bits (954), Expect = 3.330e-121
Identity = 176/311 (56.59%), Postives = 234/311 (75.24%), Query Frame = 3 
Query:  159 PTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSET--FTTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            P   SFW+ E ++E+L + + L ++ F  +S FQ +Q++ET  FGKTLVLDGKTQSA  DE +YHE+LVHPA++AH +PK VYIGGGGE ATAREVL+H SVEK VMVD+D++V D  R  LPEW  G  +DPRL++HYTDAHAFL++ EG +DVIIMDIADPIEAGPGY+LYT+EFYK+A T+L+ GG  VTQSG  A++  DECF+ I+ TLK+ F  V     D+PSFGC W FN+A+++E      E    +  + T+A +AARIS   + YDGI+H G+FG+PK +R ++E E+R++T++NPVFMY
Sbjct:    8 PLEKSFWYKESLTEDLYMSTTLKRVTFEAASTFQTMQIIETTSFGKTLVLDGKTQSAASDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHPSVEKVVMVDIDEMVCDLCRKELPEWSDGCFEDPRLEVHYTDAHAFLKQYEGTFDVIIMDIADPIEAGPGYVLYTEEFYKYAVTKLNKGGYFVTQSGPGALYNWDECFSAIYSTLKTAFNTVLPYSVDIPSFGCVWAFNMATNTEEPEKAKEAIIERRISETNALVAARISKPTKHYDGISHLGMFGLPKPIRDSVEAEKRVITVDNPVFMY 318
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A7S1CPT3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPT3_9STRA)

HSP 1 Score: 372 bits (954), Expect = 5.210e-121
Identity = 187/325 (57.54%), Postives = 234/325 (72.00%), Query Frame = 3 
Query:  153 KPPTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLA--SDSETFTTEDYRRKDPAA---------TDADIAARI---SGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            +P  TS+FWF EDV+ +L  R+ L +I+F+  S+FQ VQ++ET PFGKTLVLDGKTQSA  DE++YHE+LVHPAMLAHA+PK V++GGGGE AT RE+LRH SVEKCVMVD+DK+V D  R+ +PEW  G +DDPRL+++Y DA A++   +G +DVIIMDIADPIEAGPG  LYTQEFY+FA T+L+PGG+ VTQSG  A    DEC +VI+KTLK+ F +V    +D+PSFG  W FN+A   D E         KDPA+          DA I ARI   +G LRFYDG    G+FG+PK  R    +EER MT+ENPVFMY
Sbjct:    7 EPTMTSAFWFTEDVTPDLATRASLQRILFDAKSEFQRVQIIETGPFGKTLVLDGKTQSALADEYVYHESLVHPAMLAHANPKSVFVGGGGEFATTREILRHPSVEKCVMVDIDKVVCDICREHMPEWHDGCVDDPRLEVYYEDAKAWIEGYDGKFDVIIMDIADPIEAGPGIALYTQEFYQFAITKLNPGGMFVTQSGPGATFNADECGSVINKTLKTAFDYVVPYASDIPSFGSNWAFNIAFNKDHELAAAALAAGKDPASIFIDMERSEVDARIEARIKGGAGALRFYDGTCQRGIFGLPKAFRDVYAKEERFMTMENPVFMY 331
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A3R7KTL5_9STRA (PABS domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7KTL5_9STRA)

HSP 1 Score: 371 bits (953), Expect = 4.730e-120
Identity = 181/313 (57.83%), Postives = 232/313 (74.12%), Query Frame = 3 
Query:  159 PTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLAS----DSETFTTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            P   SFW+ E ++E L L + L  I F   S FQ +Q++ET  FGKTLVLDGKTQSA+ DE IYHETLVHP+MLAH +PK VYIGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  +PEW  G  +DPRL++HYTDAHAFL++ +G +DVIIMDIADPIEAGPGY+LYT+EFYK+A T+L+ GG +VTQSG  AV+  +ECF+ I+ TLK+ F  V     D+PSFGC W FN+A+    D +   T D R +  A T+  +  R+S  L+F DG++H GLFG+PK +R A+E E R++T++NPVFMY
Sbjct:   75 PMEKSFWYKEALTEELYLSAALKTITFEAKSKFQTMQIIETHSFGKTLVLDGKTQSAKNDESIYHETLVHPSMLAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTEEFYKYAQTKLNKGGFMVTQSGPGAVYNWNECFSAIYSTLKTSFNTVVPYSVDIPSFGCVWAFNMATNVDHDGDVAVT-DIRERRIAITNELVETRLSKPLKFLDGVSHMGLFGLPKVVREALENETRVITVDNPVFMY 386
[Close]
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Match: A0A484DTM6_BRELC (PABS domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTM6_BRELC)

HSP 1 Score: 369 bits (947), Expect = 5.110e-120
Identity = 178/313 (56.87%), Postives = 230/313 (73.48%), Query Frame = 3 
Query:  159 PTTSSFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKTQSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYDVIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSET----FTTEDYRRKDPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIENPVFMY 1085
            P    FW+ E ++E+L +   L  I F   S FQ +Q++ET  FGK LVLDGKTQSA  DE IYHE LVHPA+L H +PK VYIGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  +PEW AG  +DPRL++HYTDAHAFL++ EG +DVIIMDIADPIEAGPGY+LYT+EFYK+A+T+L+ GG +VTQSG  AV+  DECF+ I+ TLK+ F  V     D+PSFGC WGFN+A++ +           R +  AATDA + +RI   L++ DG++H GLFG+PK +R A+E E R++T++NPVF+Y
Sbjct:   15 PAEKLFWYKEAMTEDLYMAVALKTITFEAKSSFQAMQIIETNSFGKMLVLDGKTQSARSDEAIYHEALVHPALLNHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWSAGAFEDPRLEVHYTDAHAFLKQYEGTFDVIIMDIADPIEAGPGYVLYTEEFYKYASTKLNKGGYMVTQSGPGAVNNWDECFSSIYCTLKTSFNTVVPYTVDIPSFGCVWGFNMATNVDNEDGAAVLTSIRERSIAATDALVKSRIRQRLQYLDGVSHMGLFGLPKIVREALESETRVITVDNPVFLY 327
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.279.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT45_ECTSI3.010e-18992.61Spermidine/spermine synthase n=1 Tax=Ectocarpus si... [more]
A0A836C836_9STRA6.440e-13362.03S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A2D4BNJ7_PYTIN1.570e-12556.83Spermidine synthase n=2 Tax=Pythium insidiosum Tax... [more]
A0A7S2V6Z8_9STRA2.140e-12561.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WN33_GLOUD6.580e-12457.32PABS domain-containing protein n=2 Tax=Pythiaceae ... [more]
A0A6A4DP37_9STRA1.200e-12258.15PABS domain-containing protein n=6 Tax=Phytophthor... [more]
A0A8K1CQB7_PYTOL3.330e-12156.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1CPT3_9STRA5.210e-12157.54Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3R7KTL5_9STRA4.730e-12057.83PABS domain-containing protein n=18 Tax=Peronospor... [more]
A0A484DTM6_BRELC5.110e-12056.87PABS domain-containing protein n=1 Tax=Bremia lact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1290664..1300643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT45
Preferred nameSPS1
PFAMsSpermine_synt_N,Spermine_synth
Model size1947
Max annot lvl2759|Eukaryota
KEGG koko:K18787
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0009888,GO:0009914,GO:0009926,GO:0009987,GO:0010087,GO:0010089,GO:0010487,GO:0010817,GO:0016740,GO:0016765,GO:0016768,GO:0030154,GO:0032502,GO:0044424,GO:0044464,GO:0048759,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:1905177
Exons7
Evalue1.08e-194
EggNOG OGsCOG0421@1|root,KOG1562@2759|Eukaryota
Ec32 ortholog descriptionspermidine/spermine synthase
Ec32 orthologEc-04_002790.1
EC2.5.1.79
Descriptionspermidine synthase activity
Cds size1068
COG categoryE
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.279.2prot_P-littoralis_Contig1.279.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1290684..1299784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.9971633-UTR-P-littoralis_Contig1:1290663..12906831680789318.9971633-UTR-P-littoralis_Contig1:1290663..1290683Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1290664..1290683 +
1680789319.0855472-UTR-P-littoralis_Contig1:1299784..13006431680789319.0855472-UTR-P-littoralis_Contig1:1299784..1300643Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1299785..1300643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789319.0079885-CDS-P-littoralis_Contig1:1290683..12908411680789319.0079885-CDS-P-littoralis_Contig1:1290683..1290841Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1290684..1290841 +
1680789319.0208766-CDS-P-littoralis_Contig1:1294020..12941111680789319.0208766-CDS-P-littoralis_Contig1:1294020..1294111Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1294021..1294111 +
1680789319.0288718-CDS-P-littoralis_Contig1:1295028..12951601680789319.0288718-CDS-P-littoralis_Contig1:1295028..1295160Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1295029..1295160 +
1680789319.0371234-CDS-P-littoralis_Contig1:1296024..12961171680789319.0371234-CDS-P-littoralis_Contig1:1296024..1296117Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1296025..1296117 +
1680789319.0561028-CDS-P-littoralis_Contig1:1296581..12967701680789319.0561028-CDS-P-littoralis_Contig1:1296581..1296770Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1296582..1296770 +
1680789319.0666678-CDS-P-littoralis_Contig1:1298205..12984271680789319.0666678-CDS-P-littoralis_Contig1:1298205..1298427Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1298206..1298427 +
1680789319.076959-CDS-P-littoralis_Contig1:1299601..12997841680789319.076959-CDS-P-littoralis_Contig1:1299601..1299784Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1299602..1299784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.279.2

>prot_P-littoralis_Contig1.279.2 ID=prot_P-littoralis_Contig1.279.2|Name=mRNA_P-littoralis_Contig1.279.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=356bp
MVHGTCFSYGVLKTRSGSLSSRSLSTMPDAVAAKGADSGEKGSTKPPTTS
SFWFHEDVSENLELRSRLNKIMFNGSSDFQHVQVVETAPFGKTLVLDGKT
QSAELDEFIYHETLVHPAMLAHADPKRVYIGGGGELATAREVLRHKSVEK
CVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMYD
VIIMDIADPIEAGPGYILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKD
ECFTVIHKTLKSVFKHVSMSVADVPSFGCCWGFNLASDSETFTTEDYRRK
DPAATDADIAARISGELRFYDGITHGGLFGVPKWLRAAIEEEERIMTIEN
PVFMY*
back to top

mRNA from alignment at P-littoralis_Contig1:1290664..1300643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.279.2 ID=mRNA_P-littoralis_Contig1.279.2|Name=mRNA_P-littoralis_Contig1.279.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9980bp|location=Sequence derived from alignment at P-littoralis_Contig1:1290664..1300643+ (Pylaiella littoralis U1_48)
GTGCACCAGCGGCAAAATGTATGGTGCATGGTACATGTTTTTCATACGGA
GTATTAAAAACAAGGAGTGGTTCACTCTCATCTCGCTCTCTGTCGACCAT
GCCTGACGCTGTAGCCGCAAAAGGGGCGGACTCGGGCGAGAAAGGGAGCA
CGAAGCCCCCTACCACGAGTTCCTTTTGGTGAGATGCTGCTTGCATTCGC
TGCGTTCCATTCGAACCGAACGCTACCGCTGTGAGATTAACACGCAGCCC
CCAATGAGATGATACAACAGCAGCACTACAGCAGCAGTACCTTCTGGAGT
CGTTTCATGTTTCACGTTCAACCTCCAGTACAGCAGCTGTTGATTACTGC
TGTAATTTATAAAAAGCGCATTTTTGCCAGTGCAGTGGTGTTGACACCAG
GAACCATGCCACACACACACCCGCACCTACCCGGCATGCAATTGGGCCCT
GAATTCGGATATTACTCTGTGGTGTCACTATATACTGGCAGGGCTGCTGT
GGGCTGTCTGTCGGTAACTCCGCTATCTTTCTCTCTTGTCGGAATCATTT
TCTTTGCCGCTACAACCTGTAAACATGTGTTCGTATGTACGAATCATGTC
ATACAGTGCTTCGAAAGTATCATACAGCAGCAGAAGCAGCAGCAGTACAG
CAGCAAGAGCTGACCTTTTATCACACCAAGAGAGACCTCTGAGGAGCATG
CAAAAAGCAGTGTTCGCTTCCAGCAGCATTGGGAGATCCTCTAAAGAACT
TGCGCGACACAGACACACACCATCTGAACACACGCATATTCATGCACACA
CACGCAAACACACGCAAACACACGCAACCGTATCATAGGTCGCACAAGAT
AATTCGCCCCCTGGACCGATTTTCAAACCTTAATTTCTCCACACCGACGA
AGGTGCCAGCATCAAACGATATGTTTTTAGAAAGCTCTCGAGATGGTTCC
AACGCCGCCCCTTTCCGGCACCCACACTCTTTCCGCTGCGGAGTAATTGT
GCTATGAAAATCGGTCCGAGGGGTGTGGTATCTTATGCGATCTACGGTAC
ACACCTATGGGTAAAAGTACCTGTATACTACACGGCGCCCACACTCCCAC
GCTGGTTTTGTTCGTTTCCAATCTTTCTTTGTCGAGCATGTTTTTCTGTA
TTTTTGTATTTTTGTACTTAGGCCACCACAGATGGTACCCCAACGGTATT
ATGTCTGATTTCTGATTTTTCTTGGGTGACCATCGTTTACTTTCTGTTCC
TGTATTTTCCCCAGCAGTACCGCTGCTTCTGCTGTCTACACTTCGTTCGA
TCTTCCTATCTTTAGCGTTTCACGGCCTCTGATTGGCCAACCTCGTGTGT
GCTTGAAACACACCGCGTTCTGTCCTGCAGACCACCGGCATTCCGCCGCG
CCACCACGGCTTTCCTTGGCCGGTCGTACGGGTTAGGGTTGGGTAGGATC
GACTTGGGTCGGGCACTGTTTATGTCATACTTGGTTTGTGGAGCTGAAGT
TCAACATATGTTTAGTCCCAAAGATCCTCGAACAGAGTGTAAACAGACCA
CGGCATTTGTCTATCATAGTTTGTGACCACGGGCTAGACTTTGGTGACGA
TCTAATGTGAGAATCAACAAGAACCTACCGCGCGTTTCACGCACCCGCCT
CAAAAGAAACCACCACGGTTCGCTCGTGCCTTCAAAAGTTGATGTTCTCT
ATCGCATCGATCCACACGTGGTCAGCCTCGCCTTCCCGCGCAGCCTTGGA
CCATACGAAGTATAAGTATCATAAGTTGCGGTAGTCGACCGCAAGATGAA
GCAGGGTGGGGCAGAAAGGATGTGCTTCTTACCCAGCATACACAGCAGGG
CACCGCCAGAAGTCTCCGCTGGAAGTCTTTTTCGCGCACGAGGTAACGGC
TATCGTACGGCTCGAAAGGGGCCGTGTGTGTAAGCGTCATCGAAAGATAG
ATCCAGGGACGCAGGCAGGCAACGCCCGTCCGAGGCAGCAGCAAGATGCG
CATGTCCTTGACGAGTGACCACGGGGTGCCGGCCCTTTGATGGCCATTTT
GCGGCCAAAGCTTGCTGCAGCTGCTGCTGCCGCCGCTCGCTGTATGTACA
GCAGTATACACCTCGCGGCCCTACTGTGTCGGGGAGCAAATGGGCCAAAG
CGTTGGGACAACAGCAGTTACCGTAGATGACTTGACACAAGATACCACCC
CTCCCTGGACTGAGGTCGAAAGCGTCATCCCTCCTATAGCGAGCCGAGCG
TCAGTGCCGATGGTGCAGGCGTTTTTCTAGAAACATCTCGTTGAGAGCTT
TCCAAAAACGTTCTGGCACCCTCTTCTTGACGTAATAGTAATCGACCTGC
AGCTGTGAAAGTCCGGTTCAAGGTGTAAGGTAAATTGTGTCACATAAAGG
CAAAGTTCAAAGGCGGCATAGCATGTTCTGGGAAAGCGACGCTGCGGGCC
GTTGTCACGCCAAACTATCCTGTGTCAGGCCTCCTCCAGACCTTGTTGAT
ACCAGGTGTCTGGTACTTCGAAGTATTCATTTTTGACACAAGATCAAAAT
GGCGCACATGTGAATGAGCGTGAGGCGAAACTTGAAGGCACTGCACCACG
TATTGCACCACGGATTCTTGAAACCGACCTTCGTCCCACGCTGCGAGTAT
GGCGTCGTCGCCGTATTATGCGCGCTCGCTTTATTACTCCACGTTGGCAA
CATCGACCTCCCTCGCCCGCAAGGGGCTCTGCTGCGGTTTAGCGCTGCGA
TTTGACACGTCTGTTGACGCTTTTTGTGATAGACGTATTATTTCATAGTT
GACCAATGAAGCGAGCCTTGTTGTGTTGCCAATTGCCAACAGTATTCTGT
CGATGATAAGGTCACGCCTCCGTCGCTCAGCGGGTCATTTTGCGGCCACA
TCAAGTGTGCAGGGCAATTTGTCCAGCTCATTTTTTTCTTGTGATGATCT
GACTTGAGACTGGAAATTTGACTGGAATCCTCAAACGCCCCCCTGTCGGA
AACGCAGAACAAACAGCGAAGTATCAAAATTGAAGATTTAAGCAATAATT
TGGTCCATCTCTGTTTTCAAGTGGTTCAGGAAAATGACCGACAAATTCGG
TATAAATAAGATCGAATGCACGCGTATGTATGATATGTATGGGTGTGGTC
ATGTAATCGCACCAATCGGCGCTATCGCATGGAAGTGCATACTACTGTAA
AGAGGGCGAGAACGATGTAGTTTTTTGAGTCACCCGAGGTACACGGTGAA
CGCGTAGACGTCACGACGAGTAGTGAAGTGTCGTTTTGAAGTGTATGACA
TCATGGATGATTGAACCCGGCTTGATCGATCTGTCTGCTTGATGCGTGTC
ATGGAAGGTTTCATGAAGATGTTTCAGAGAACCTGGAGCTGCGGTCAAGG
CTCAACAAAATCATGTTTAACGGCTCATCCGACTTTCAACACGTGCAGGT
GTGTGCATGCGTGTGTTCGTGCGTGTGTGCGTGCGCGTGTCTTTTTATGT
GTAGCATTGACCGCGCCAACCTGCTAGAATATTATAAAGGGTATATACAT
GAGTCTCAGAGGATCTCCTATCTTGCCGTTGAGGGTGGCGGAAAGTAGGC
GTAAGGGTCCGTCCAGACTCCGGGTTCGGCTTCAAAACAACTCGTATACC
GCTTCGAGGCATTTCACCCGCAGCATGATGTGTGCTGCTTCTGCTTCTGC
TGCTGTCGTGGAATGTCGCCTTGGTGCAGGTGGCACTAGCCGTTAGATCA
GTCAAGATGTGTTGGCCTCGATGCGTGTGTGCCTGTGCTGCGTGCGCGAG
TGCGTGTTTGCGAAAGCACCATCCTACACCCCGCGCTACTTCGAGAATAA
AGAGCGGGTCAAATGTTTCCAGCTTTGTTCGTTACATCTCTTGTAGTCCG
AAATTTGTACCCGGTATGACTTGGATTGTGGAGGGGGAAGGGCAGGGGGA
AGTCCATAAACCCATCCCTCACGTAGCCCCCGGCGTACAAGAGGGGACCT
TAGCCCCCCCCTCTCCCCTCCCGCATTTCAGTCGATGCACGAATATTTGG
CGCAATTTGATAAAGGTGATTACCCTCGACTGCCATCATTGAAAGCAAAC
ACACGTGGATCACACAGCAGAACAGAAAATGAAAGTTCCGACGGCATCAC
CTTATGTCTTGTCGCCTTGCAGACGTTGCAGGAGATGCAACAAAATTAAT
GCACAGCTTTGCCACGATCATTAGATTTGTATGATTTTCGGTCGGTTTTC
TGCCCTGGTTCGCTGGTTGTAGCCAGTAGAAAAATGTGCGGCAGGAGATG
TTCAGAGGACTTTGGTGTGCAGCAATCAATGATCCAATTTTTTACTTCGT
GTTTGCTGCTTGAAGGTGGTAGAAACGGCGCCTTTCGGGAAAACTCTGGT
TCTTGACGGCAAGACTCAGTCGGCGGAGCTGGACGAGTTCATCTACCATG
AGACGCTTGTGCACCCGGCCATGCTGGCGCATGCGGACCCGAAGCGGGTG
TGTGAACCAGAGATTTATTTTTCGCTGTTCCTTATTGATATATTATTGCC
TTCCCACTTTGGCGGTAAGTCGGGTGTTGATAGCTACGAGTATTTACCGC
ACAGAGGTTAAACTCGTTGAAGGTTGCCTTTCACAACGTACCCCATTGTT
CACCATGGCCAGGCGCACACACAAGGCGGGTAAGCCAAAGCTTAGGAGTT
GGTGTTGGTATATTTTCTTCGGTTTGGTGGCTGCGAACGTCTAATAAACC
ACGATTGACATTCAATTTCACGCAAAATTGTCAACCTACTTGTTTAACGA
ACTGTCATTTTGTTCCAAGCTTTTACCTCACGACGCACCCCCAACGCAGT
TGTTACTTTTGTGTTCGTACTCGACAGCCGTAAGCAGCACCCACTTGTTT
GCAGCAAGGAGGCGTTCAGTGAATCGTTGGAGATCCTCCTTTTCGCTTAT
GCAGCAGGGAATCGAAAGTCGGTTTCAGCCGACCGATAAGCTTTGTTCTC
TATCTCATCTATCGTGTCTTTTCTCTCGCAGTATATGCGGAAATTCTCAT
ATATCGGGGGGGGTAGGGGCTCTTGTTGAAGTTCCCATTCGTTGCTGGGT
TTAGTAGCGTCTTGACAAAGAATACTGGTTTGTTGAGCGGTTTTGGTGTG
TTTTTTTTGCAGGACAGTATTCTAGGGTAGGCGATGGGCGGAGAGCTACC
CACGGTGCGGAGGTGCGCTACTGCTGCTGTGGCCCTCCCTTGGGAAGGTG
TTCAACTGGATGAATCAAGACTTAAACTTCTGCATGAATCACACATCTAT
CCGTTCGTATTTGCCGTAATAGTTGCAAAATTTTAGTTTGTGTGCGTTCG
GTTATCGGCAGGTTTACATCGGGGGGGGCGGAGAGCTAGCCACGGCGCGA
GAGGTACTGCGGCACAAATCTGTGGAAAAGTGCGTCATGGTCGACCTAGA
CAAGGTATCGCAACGACCTTGCACAGCCGTAGTTGGCGGCAGGCGCACAA
CGAGCCGCGCCACTTAGCTAGCAATAGAGATATGACTGCTGTTCCTCGTG
AGTCTGGATACGAGCTAATGTGAGTAGGAGAGCAGACACGACGTAGGATG
GAGACTGCGCTGCGGATGGTAGCAAACAGAACGACAAACCCCTGTATTGA
AACAAAAGGTGCTCATTGTTGCTGAAAGCATCTGGGGGCGTCTATGAAAC
GGTTGGCACGCATGGGTGTTTGTATTTTTCGCCTGTTGTCACATTATCTT
ACCTAAATAACCTTATCTGGTGGTCGCAAACAACAACGGCAAAGTACTGG
ATATGGTCCCCCCCCCCCCCCCCCGGTGCTACTCCGTGTCGAAATGGATT
CGTCACCAGTGGCCAAAATTGCTTACGGGAAGGGTCAAATGAAGTCGCCC
CCCCCCCCCCACGCCCAGTTAGTAGTGGATACATCGAGGGACGTGCTGCC
GGAGTGGGGTGCGGGGGTCCTCGACGACCCTCGTCTGGACCTGCACTACA
CGGACGCCCACGCCTTCCTCCGCGAGAACGAGGGCATGTACGACGTTATC
ATCATGGACATCGCCGATCCCATAGAGGCCGGCCCGGGGTATATACTGTA
CACGCAGGTGACTTGCAGTGTCCGTTTCTTGACTTGTTGCGTTGTGTTTT
CCGTGGATGGCGGGGTGCCGTGTACGGTACATGACCAGGGAGTGCTCTGC
ATGTGTGTGTGTGTGTGTGTGTGTTTTTTCCTTTTGGACAGCAGTTATTC
CGATCTTGCTGGCTTTTTCTCTGCTGGTTTTGTTTCGAAAAAAAGCCCGC
CCTCGGCCGCTTCTGGCTGGGGCGTGTGCGTCGGTGAAGCTTTCACGTTG
GGGCTGTGTGCGCGCGTGCATCCCCCGCGTGCATCTTTGTTCTCGCTCAC
TCGTTGTCACGAGTATTTAGCGCTTGGAAACTCACCGGGGGGTGGGGGTA
GCTGCAGGTACTGTGCTGCTTTATCGTATGCTGGTACACAGCCGGCATGC
AGAGGTGATAGATTGACTCAGAACACGACGAGATATCAAACGTGTTAATT
ATTGTTTGACTACCGGATCAGGTTTGCCTGGATGATGAAGCTTAGATACC
ACGAGGGGTAGGGTGCGCCGGCGAACATTTACAGTAACACGAGTCTCAAA
TCGGGAGCGTGTGTGTGATGTCATCCTACCTGTTCTGGACGCCAGCCTAC
ACCTTTCGGTACAGTAAGACTTCAAGGGCGAATATGTCCAGGAACATCCG
TCTCGACTCTGTGTGTGTCGTCATCCCATCTATTTATTCTACACGTCAGT
CTAAACGTTTCGGCATAAGTTGGACGCGCCAACCCTAGTAGGTGTCGAGG
TTGCCAGCACCTTTTCTCCTGTTGGTGCGATTCTGAGCGCCGAACCTCTA
GTGGTACGAAGAGGGTGCTCGTCCAGAATGCTCCTTGTTCATCACAATTT
CCTTTTGTTTTTTTCATCACCGATACGAGACACGAATGAACACGTCGCGG
TCACCGGCGTTGATCTGATTCTGAACGCTTGCGCACTTCATGGTCGAATC
CTTTCCCGTCTGTTTTCGTTCTGAATCTCCCCCCCCGCGATGCTGTCGTC
TATTCTCTCTCTCGTCTTGACGGCGAGATTGGCTGGTGTGATGTGTTGTC
TCCTCTCCTGTGAGAACCTCGGAACAAAATATTTGGTTCCCAAAACATAC
GAAAAGTATCTCCGAAACGGATTATGCAGCACGATACAATTTCACTCTCG
TTAGATCTCGATATTCCTGTATTCAAACAAAAATCACGAGAAAGTCTGCT
ACACACTCGTCGAATCTTGGATCTTCATCTCCATATCATTTTAACCTTGG
TACACACGTCTTGGTACACGAGTCTTGTTTGGCGCATGTTGTTGTTTGTA
CCCCTTTCCGACATTCCTATTTTTCCTGTTGTCTCCATTTTTGTTGGCGG
TGTGTTTTCGCCCGCCCGCACACCCGGCCCTTGCTCTGCCCCTTGGTCCT
TCCATATCACACGCGCGCGCTCACCTGTATGCATTCATGCAGGAGTTCTA
CAAGTTCGCAACGACGAGGCTTTCGCCGGGCGGGGTGCTGGTCACGCAGT
CTGGCGCGGCGGCGGTACACCTGAAGGACGAGTGCTTCACCGTTATCCAC
AAGACGCTCAAGTCTGTGTTCAAGCACGTTTCCATGTCGGTGGCCGACGT
TCCATCGTTCGGCTGCTGCTGGGGCTTCAACCTCGCCTCGGACTCGGAAA
CTTTCACCACAGAGGTAGGCCCCTGGCGGTGTTTTGATTGTCGTTGTTTA
GAGCAGTGCTTTTCGGTTGTCGTGCCCTAGTATTTTCTTGTGCTTCGTCC
CGACGTGTGAGCGTTTGTTGTTGTTGAGTTTTCAGCAGAGCCCGCGCTAC
CCGACTGGCTTTTGACAGTACGTCACTTTTGGCGTGTCGAACACAAAAAT
GTTACTTTGAACCGGGGTCTCGAGGGCTTTGCATGTGTGTGTGTTTATGT
GTGTGTTTGTGTGTTTGAAGAGTTTAATGCTGGACAAGTATTGCGTATTG
ATGTCGTCGGTAGACGTGTCCTTGTCCGGCTGGTGCGGGGGGTCCAGCCT
TGCTCAGACCAAACTCCAACATTGCAACAGGAGGTCAAAATTGTTGGGTA
CCTTGTGGAGTGCTATGATGAAATGCTTTTTGTATGATTGGCATTTGGCA
ATTCTGTCTCTCGTTGTATTTGTGTGTCTGTGAGGTTTTGTGCATTTTTT
CTTTTCTGCCGCTGACACCACTCCGTCAGCATTAAAACAGCAAAGCAACC
CAATAAATTCTAGGCTCACGTCCATGTATCACAACACTGTCGGAGTATTG
TACATCTATGAACAGTGTTGTTTTTCCAAGTGTTTTTTTTTTAGGGAGTT
TCCTCATACGAAGTACAGCCGTAGTGTCCTGTTGAAAATGCTTCAATATA
CACCTGTATGTACCACGCCTTGCTGTTCTGTGTTTCGAGTGCGCTACAGC
AGTGTATGTGTGTGTTGTCATCCCTTTAATTGGACGCCACTCTGCACCTT
TCTTGTAGGTAGACGCTCCAACTGGGGTCACGCAGGGGGAAGTCAACTCA
AGAGTTTTTTTTTTTTTCCCACTTCCCTCTGCGGTGTTGCCTTGTTTTTG
GTTGAGCTTTTATCGCGAGAAAGGGGACAGTAATCCCTTTCCCTCGTCGA
TGGTACGATCGAATTTTGTTCACTCACGAATTAATCGCTTTCCACTTTCA
CGCGCATTGTGACAAGAAAACCCAGATCGTGTTACTGCACTGGGATTCGA
ACTCACGCGTGAATGTCAGAAGGTTACGTGGGTTACCAACTGAACCACGG
GGGCGACCGGTCTCTGCGCCCCGTTAAACAGCAAGTCACCGTAGGCGTTT
CGTTTCGACGCTGTTCCCATTCCGGTTTCATGTTTTAGGATTACCGGCGG
AAGGATCCGGCAGCGACGGATGCGGACATCGCGGCAAGAATCTCCGGAGA
GCTGCGGTTCTACGACGGGATAACTCATGGTGGTTTGTTTGGCGTGCCGA
AGTGGCTCCGAGCAGCGATCGAGGAGGAGGAGCGCATTATGACCATAGAA
AATCCCGTTTTCATGTACTGATTTAGCGACGCAACGTGGGAATAAGGAGA
GGAAGGCAGACGAATGTGTGTACGTAAAGAGAGAGAAAGGATGGGGGATC
GGGAGTACGATTGTTTGTTGAATCAAACGTATCGTTGCCCAAATTGGCGA
CCAAAACTAGTGGACGTCGCCGAATTTGTGGTGCTTCCAACGGCGCACGC
TCAGTCGAACATTCGCGTGCGTGAGTTTTTTTGGGCTCCCGGCGCGCACG
CGTATCGATTACCCCGATTGTTCGGAAAGGCCTCTGCCCTCGCCGGTAAA
AACATAGAGGTATCATATCGTACGTACACGTGTACCGGTATGTTCTCCCC
TGTCACCTTGTTTAACGTCAAGGTATCAGCCGATATCCTGCGAAATACAT
GGTAAATATAAATACATTATCATATCGTGTGCCAAAAAAGAAAAAAAAAC
AGCACTAACTGTACGCAGCATTCAGCATGCGTACGATACGAGTACAATAT
AAAATTTCCTCTGCTTTTGTGAATGTATTTTGGCTCAAGGTACCGCGAAC
AACGTATATTTTCTGTGTCACAAAGAAGCGAAACTCACACTTGCAGCGTG
CGAAGGTTGTTGTTGGAAGGTCAGTTGTGTGAAAGATGCGAGATAGGGAT
TTTATGTAATGGGGAAGTTCAGCTACCGTGAACCACGAGGTCTCTTCTTC
TTGCGGGTACGAAGCGTCGCTTCGAGTCTACGGAAATACCAACTGGTGAT
AAGTACGAAGTATTTTCTGTCGATGCCACCCCACACAGCACAGAGTGCAC
GTAGATGGCGTGGCCACTCAGCTTTCACAGACGCTTTTCCTTTGTGCGCG
TACGGCGTGGAATATACACCGGAGTCTCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1290664..1300643+

>mRNA_P-littoralis_Contig1.279.2 ID=mRNA_P-littoralis_Contig1.279.2|Name=mRNA_P-littoralis_Contig1.279.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1068bp|location=Sequence derived from alignment at P-littoralis_Contig1:1290664..1300643+ (Pylaiella littoralis U1_48)
ATGGTGCATGGTACATGTTTTTCATACGGAGTATTAAAAACAAGGAGTGG
TTCACTCTCATCTCGCTCTCTGTCGACCATGCCTGACGCTGTAGCCGCAA
AAGGGGCGGACTCGGGCGAGAAAGGGAGCACGAAGCCCCCTACCACGAGT
TCCTTTTGGTTTCATGAAGATGTTTCAGAGAACCTGGAGCTGCGGTCAAG
GCTCAACAAAATCATGTTTAACGGCTCATCCGACTTTCAACACGTGCAGG
TGGTAGAAACGGCGCCTTTCGGGAAAACTCTGGTTCTTGACGGCAAGACT
CAGTCGGCGGAGCTGGACGAGTTCATCTACCATGAGACGCTTGTGCACCC
GGCCATGCTGGCGCATGCGGACCCGAAGCGGGTTTACATCGGGGGGGGCG
GAGAGCTAGCCACGGCGCGAGAGGTACTGCGGCACAAATCTGTGGAAAAG
TGCGTCATGGTCGACCTAGACAAGTTAGTAGTGGATACATCGAGGGACGT
GCTGCCGGAGTGGGGTGCGGGGGTCCTCGACGACCCTCGTCTGGACCTGC
ACTACACGGACGCCCACGCCTTCCTCCGCGAGAACGAGGGCATGTACGAC
GTTATCATCATGGACATCGCCGATCCCATAGAGGCCGGCCCGGGGTATAT
ACTGTACACGCAGGAGTTCTACAAGTTCGCAACGACGAGGCTTTCGCCGG
GCGGGGTGCTGGTCACGCAGTCTGGCGCGGCGGCGGTACACCTGAAGGAC
GAGTGCTTCACCGTTATCCACAAGACGCTCAAGTCTGTGTTCAAGCACGT
TTCCATGTCGGTGGCCGACGTTCCATCGTTCGGCTGCTGCTGGGGCTTCA
ACCTCGCCTCGGACTCGGAAACTTTCACCACAGAGGATTACCGGCGGAAG
GATCCGGCAGCGACGGATGCGGACATCGCGGCAAGAATCTCCGGAGAGCT
GCGGTTCTACGACGGGATAACTCATGGTGGTTTGTTTGGCGTGCCGAAGT
GGCTCCGAGCAGCGATCGAGGAGGAGGAGCGCATTATGACCATAGAAAAT
CCCGTTTTCATGTACTGA
back to top