mRNA_P-littoralis_Contig108.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig108.62.1
Unique NamemRNA_P-littoralis_Contig108.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig108.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig108contigP-littoralis_Contig108:192424..194176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size332
Hectar predicted targeting categorysignal peptide
Exons2
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789406.8994277-UTR-P-littoralis_Contig108:192423..1924871680789406.8994277-UTR-P-littoralis_Contig108:192423..192487Pylaiella littoralis U1_48UTRP-littoralis_Contig108 192424..192487 -
1680789406.932027-UTR-P-littoralis_Contig108:194109..1941761680789406.932027-UTR-P-littoralis_Contig108:194109..194176Pylaiella littoralis U1_48UTRP-littoralis_Contig108 194110..194176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789406.9126096-CDS-P-littoralis_Contig108:192487..1925011680789406.9126096-CDS-P-littoralis_Contig108:192487..192501Pylaiella littoralis U1_48CDSP-littoralis_Contig108 192488..192501 -
1680789406.9239995-CDS-P-littoralis_Contig108:193922..1941091680789406.9239995-CDS-P-littoralis_Contig108:193922..194109Pylaiella littoralis U1_48CDSP-littoralis_Contig108 193923..194109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig108.62.1prot_P-littoralis_Contig108.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig108 192488..194109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig108.62.1

>prot_P-littoralis_Contig108.62.1 ID=prot_P-littoralis_Contig108.62.1|Name=mRNA_P-littoralis_Contig108.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MTRRLLFAAALGLGLASVRAAVEGRRQLQGTAGTCVFVERVSGKALAPGQ
SEVSLRRHRLVPDTGG*
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mRNA from alignment at P-littoralis_Contig108:192424..194176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig108.62.1 ID=mRNA_P-littoralis_Contig108.62.1|Name=mRNA_P-littoralis_Contig108.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1753bp|location=Sequence derived from alignment at P-littoralis_Contig108:192424..194176- (Pylaiella littoralis U1_48)
CAACCACAACCAACCGCCTAGTCCAATATCCCAGGGAAAAAATATACACG
AGCACTCGCTAGTAAGCATGACTCGGAGGCTGCTGTTCGCTGCAGCTTTG
GGTCTCGGCCTCGCTTCCGTTCGTGCCGCCGTAGAAGGCCGCCGTCAGCT
ACAGGGGACGGCCGGCACATGTGTCTTCGTCGAACGAGTGTCCGGGAAAG
CGCTCGCTCCCGGTCAGAGTGAGGTCTCGCTCCGTAGACATCGATTAGTA
CCAGGTATGTAGTCTCGAATGATGAAGTGCTCAAGTTGTGGCTTACAGAA
AACATATCAAGAGAAAGTCATGGAATGTCGGGGGAGGTTTGCTTAAAACC
AGGCAGGTTATTGATTTTCGGAAGTACGCACGGACTATCCACCCGCCTAC
GTTACAAAAATGTGTAAACTATACCCTCGACGAGAAAGCGAAAACCCCAG
CCGCGATGCCATGCTTTGATCACGAAACCCACCACGAGAAACCCATGCCC
ACCAATATTCTGCTCAAGCCATATGGCTCCGGTGGTACGATGCTGGGTCC
TCTCGTAATAATGATGTACCTACGCAGCAGGAGGATAGCTTTTCCATCTA
CATGTTATTGTCGCTTGAAAGCAGAGATGTTTGTAATGAATGCTTTGAAG
GCCACAGGCATATGCCGAGGGAAACAATTCTACAGCCTACACCTGACCTT
TTGATCCCCGGCTGGTGCACCCTACGTATTATGCCGAAAGGTTATACAGC
ACAGAATAGGTGAGACGACAACAAACAAAGCCATTAACTAACCAAATATC
ATCTATATCCTACCTTAACAGGACGCTGTCAAGAGGTGTATCGGTAGACC
CCAGTCGGGGAGATGGGCAACCGCCGATGGCTGAGTACGGCACTCCACAA
ACAAACCTTTCGCGTCGACGGCAGGACAAAGTCGTGGGTCCGCATCCCGG
GGTACCCACTTCTTTTTCATAACAAAATGTGCGCGGAATATAACCCACTT
CTTTTTCATAACAAAATGTGCGCGCAATATATTATGTAGTAAAATATCGC
TCAGCACGGCCAGCTCTGCATACGAAATCCTGGTTGGAAAAAGCATCTGG
CCCTTCTCATGAGGCCAGTCCTTGTCAATTTCCATCCACGTGTCAGTGCC
AGAGAGTTTTCAGAGGTGGAGATTTCAATCGTCGGGTACATGGTTGAACT
TTACCGACAGGTGTCTACACCTCCTTGCAGAGTGGGAATATGAAACTCCG
ATCATTTCTTGTCTCATGCACATACATATGCATGTGGTGTAGTCTAAGTA
CCATCCGCGGAGTAATTGATGCATCACGCGGTCTACCTGGGTAAATGAGC
TTCAACACCGTACATGGTACCGCCGCAGTACTTGAAATAGATCTTCGTTG
CTCGGGAAACGATGGTAAACGTGTAAAATATTTCGATAAGCCTCGTACTT
CAAGTCGCTCGGGAAACGATGGTTTTTAGATAATAATTCGATGGTGGGCC
TTGTTCTTTCCAATGGGTTTTCGCCAGCATGGTGTGATCAGCAGCATGAA
TCGTCTTCACCGGTAGGGATATGGAAGTATCTCTCTCAAAGAACCTGGGT
CTAACATGCACGTACATCAACAGTTGACCCGAATCGCCTACTACTGTCTT
CCGTCGCTCGCACGTGCCAAAACAGACACAGGAGGGTAAGGAACTGTTGA
TTTCCACTAGGCGTTCCTACTTGCGCTTCAAGTCGGTTAGTGGAAATGGC
GAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig108:192424..194176-

>mRNA_P-littoralis_Contig108.62.1 ID=mRNA_P-littoralis_Contig108.62.1|Name=mRNA_P-littoralis_Contig108.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig108:192424..194176- (Pylaiella littoralis U1_48)
ATGACTCGGAGGCTGCTGTTCGCTGCAGCTTTGGGTCTCGGCCTCGCTTC
CGTTCGTGCCGCCGTAGAAGGCCGCCGTCAGCTACAGGGGACGGCCGGCA
CATGTGTCTTCGTCGAACGAGTGTCCGGGAAAGCGCTCGCTCCCGGTCAG
AGTGAGGTCTCGCTCCGTAGACATCGATTAGTACCAGACACAGGAGGGTA
A
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