mRNA_P-littoralis_Contig1.276.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.276.2
Unique NamemRNA_P-littoralis_Contig1.276.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: D7FT43_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT43_ECTSI)

HSP 1 Score: 950 bits (2456), Expect = 0.000e+0
Identity = 502/691 (72.65%), Postives = 551/691 (79.74%), Query Frame = 2
Query:   47 MDLDLGDLMSDAEKTHSSLGKRPAPSSKPQPQGDDLFQALATNLNALHQRLCREPAEVRASLEIEVRVGLISLPDRLQRATPGVPGSGAVQIDPNLMRQRGLRFVSGVSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDGINPPYCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQ-SGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRGGGMNEVREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPELDEGVRQAVLAACARFKRPTGKGSSFPGAQPVNMCKRNVLDVQRGSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNVFRVTGGGFLAGVLGSGTVLDGELVHNRTMRKAIFVAFDVLQHRERSLVSCGFLERLSVLKKGVIAEYVDRVREGGAEAAPDGHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYKRK 2116
            MDL L DL+ +AEKTHSSLGKRPAPS KPQPQGDDLFQALA  L+ALHQRLC EPAEVR++LEIEVRVGLIS  DRL+RATPG+PGSGAVQ+D ++MRQRGLRFVSGVS P F   KEEVGR+YGVAE ASKEVVYVYDSG MRDQRVV DG+NP  CERKEARQQVNFQLAAA YDLRVQAS EQ + PE   GLQPGS+EPPQGWSG+RTKRRFS+KS ++  EDE W+WRADLTLVEE                                                                      D+G+R+AV AACA+ KRPTGKGSSFPGAQPVNMCKRNV DVQRGSY +AEKTDGVRYLMM V   +G   TCVLVDRSMNVFRVTGGGFLAG++G GT+LDGELVHNRTM+KAIFVAFD+L++RER+LV CGFL+RLSVL+K +I  YVDRVREGGAEAAPDGHLMLV K+FFPRQ IMDLFRQV VEGQHRI++D+ERSLHHKTDGIIFQPDAPYKVGTD  LLKWKW+DLASVDLR YPATAA              GVRLCSEAGN+GEEVDLSR+VHLSEHD+ARLVADMQ SR+VIAE+ALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRML ++P+SDDWARQE TMRKRAVQWQYKRK
Sbjct:    1 MDL-LSDLIDNAEKTHSSLGKRPAPS-KPQPQGDDLFQALAHALSALHQRLCHEPAEVRSNLEIEVRVGLISQHDRLERATPGIPGSGAVQMDSDMMRQRGLRFVSGVSAPAFDAVKEEVGRRYGVAELASKEVVYVYDSGQMRDQRVVADGVNPLRCERKEARQQVNFQLAAAQYDLRVQASLEQPVPPEAVPGLQPGSSEPPQGWSGRRTKRRFSFKSDANTPEDERWIWRADLTLVEE----------------------------------------------------------------------DDGIRKAVAAACAQLKRPTGKGSSFPGAQPVNMCKRNVPDVQRGSYLVAEKTDGVRYLMMAVGTERGA--TCVLVDRSMNVFRVTGGGFLAGIVGVGTILDGELVHNRTMKKAIFVAFDILRNRERNLVPCGFLDRLSVLQKEIIPAYVDRVREGGAEAAPDGHLMLVPKRFFPRQKIMDLFRQVLVEGQHRIFRDEERSLHHKTDGIIFQPDAPYKVGTDTALLKWKWVDLASVDLRAYPATAA---------VGGGGGVRLCSEAGNHGEEVDLSRTVHLSEHDQARLVADMQGSRSVIAEMALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLAESPASDDWARQEMTMRKRAVQWQYKRK 608          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A835ZHC0_9STRA (mRNA_cap_enzyme domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC0_9STRA)

HSP 1 Score: 331 bits (848), Expect = 1.510e-95
Identity = 281/882 (31.86%), Postives = 363/882 (41.16%), Query Frame = 2
Query:  152 LFQALATNLNALHQRLCREPAEVRASLEIEVRVGLISLPDRLQRATPGVPGSGAVQIDPNLMRQRGLRFVSGVSPPVF-----------------------------------ARTKEE----VGRKYGV--AERASKEVVYVYDSGHMRDQRVVMDGINPPYCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGSNEPPQGWSGKRTKRRF------------------SWKSASSMSEDEAWLWRADLTLVEEVSPHRGG---GMNE---VREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPELDEGVRQAVLAACARFKRPTGKG---------SSFPGAQPVNMCKRNVLDVQRGSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNVFRVTGGGFLAGVLGSGTVLDGELVHN------------------------------------------------------------------------------------RTMR------------------------------------------------------------KAIFVAFDVLQHRERSLVSCGFLERLSVLKKGVIAEYVDRVREGGAEAAPDG-----HLMLVSKKFFPRQNIMDLFRQVHVE---GQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRT-----VIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQ 2104
            L Q     +  L +      A  +A+LE+E R+GLI       RAT  VPGSGA+  D   M+Q    FV GVS P F                                   AR K E    VG   GV  A+  S + VY Y+ G     RVV+        E K+A+  +NFQL +APYD RV  S E    P  +                                        +W+S      + A  WR D ++V+      GG   G+ E   V EVELEL P  + +WL     E+   MT  +A  L  L+  I+PLEPLS IA+P  E    V  +  + C    R  G+G           FPGA PVNMC+ ++  VQ G+YFI+EKTDGVRYL+++    +GGG  CVLVDR M  F V GG  LA V G+GTVLDGELVH                                                                                     R +R                                                            +A F+AFD+L  R R L++  F  R   +   + A Y+  +   GAE AP       HL    K+FF R  + DL R V       + R+Y D      H+TDG+IFQPDAPY VGT   LLKWKW+D+ASVDLR   A  A               +RL +EA   G  VD++  V L+ HD ARL ADM+++        IAEVA D  +G WVY+G RPDKDRPNF+TTV++T+VE+AEG+ EEEL YRM V   + D+W +Q     +    WQ
Sbjct:   16 LTQVRRGIMRTLTEEQTARLASRKANLEVEARLGLIHPLGSNTRATHTVPGSGAISRDMQEMKQAQYEFVGGVSGPAFNAIKGGAAALYAVAPAAAXXXXXXXXXXXXXXXXXARIKGECRVRVGAAPGVGCAQTLSADTVYTYEDGA----RVVVADAGTVRRETKDAKLTMNFQLPSAPYDFRVMVSVEDAQEPAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATWQSPREAPPEAALHWRLDASMVDVSEQLPGGEDAGLTEDSQVLEVELELQPHIQAQWLGAADEEQADLMTKHLALALFRLIGGIDPLEPLSLIADPPRETRLDVAASAKSKCQAL-RNLGRGXXXXXXXXXDGFPGAMPVNMCRADIAAVQGGAYFISEKTDGVRYLLVVTEEGEGGG-ACVLVDRKMGCFAVAGGAALAKVFGAGTVLDGELVHRSGAHGAXXXXXXXXXXXXXXXXXXCTAAAHPARAPPALACCASTLASDAKLPLGLSAAAAAPSPPAAAPHGAPAADATFMAFDMRVLRGRRHSPAAYACSPRTRTLPSYTRMLTPGATASLRLNPAWLLLAPPRDAYAYARADGAPAAEATFMAFDMLALRGRPLLAAPFKLRFQQVANQITAPYLAAL--AGAEGAPTSLKGVPHLRYAQKRFFARSQVGDLLRCVARPPGAARERLYLDARDGRSHRTDGVIFQPDAPYVVGTHRALLKWKWLDVASVDLRAASAEGA---------------LRLTTEA-QGGAPVDVTGVVALARHDAARLTADMRAAAAGRGAVFIAEVAHDRATGAWVYLGRRPDKDRPNFVTTVMATLVELAEGIGEEELVYRMAVGDAAEDEWDKQSRKYARVLRDWQ 873          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A4D9CWT2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWT2_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.810e-76
Identity = 215/685 (31.39%), Postives = 313/685 (45.69%), Query Frame = 2
Query:  143 GDDLFQALATNLNALHQRLCRE-PAEVRASLEIEVRVGLISLPDRLQ--RATPGVPGSGAVQIDPNLMRQRGLRFVSGVSPPVFARTKEEVGRKYG-VAERASKEVVYVYDSGHMRDQRVVMDGINPPYCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRGGGM------NEVREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPEL--------DEGVRQAVLAACARFKRPTGKGSS------FPGAQPVNMCKRNVLDVQRGSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNVFRVTGGGFLAGVLGSGTVLDGELVHNRTMRKAIFVAFDVLQHRERSLVSCGFLERLSVLKKGVIAEYVDRVREGGAEAA--PDGHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLH---------------------------------------HKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGL 2002
            G++ F  LA  L+ +   +  + PA     +EIE R+G+     R +  R  P  PG+G +++ P+       RF SGV+   F   +  +    G V E   +EVVY Y  GH R  R   +  +    E K     V+  + AAPYD+R+  + E   A  Q  +QPG       W  +R+K R S++   ++       W  D T V  +   R              EVELEL       WL+    E+    TS++A+ L   L+ +NP+E  S      P +          G  +A+ A C    +  G G        FPG  PVN+C+++V  VQ G Y++AEKTDGVRYLM ++   +G G    L+DRSM +    G   +  VL + +VLDGELV+N      IF+ FD+L   E +++S  F +RL  +     A  +  +  G A     P  +L +V KKF+ R+++  LF +V  E  HR+Y+D     H                                       HKTDGI+FQPD PY+ GTD    KWKW+D  ++D  +                      R+    G  G  +DL++ V L   D  RL ADM +SR  IAE+     +G+W Y  LRPDK  PN+ TTV +TM+E+AEG+
Sbjct:   48 GEEPFTFLARALDKIRSMILADLPATAWPKVEIEARLGIFCHQGRNEDERVFPACPGAGIIELGPDGWHGPPTRFFSGVTSGAFEDMQASIAHLGGGVVEEHMQEVVYTYP-GHRR-LRCSAENPDAGVLESKRKVMHVDMAMPAAPYDVRLTVAVEDAEAG-QEHIQPG-------WESRRSKLRSSFRD--TLGNCTLGPWSLDFTCVRTLEGARXXXXXXXXXEEATTEVELELGAEPLHTWLA-EKGEKADKETSRLASRLLDTLKRLNPVERASPGKVLTPVMMGRGGGGPGGGTMEALRARCGAILQAAGSGGGGGRHMKFPGIMPVNLCRKDVGRVQAGGYWLAEKTDGVRYLMFVLGDSRGEG--AFLMDRSMAISTFPGAEGVGKVLPAQSVLDGELVYNCLTSSYIFLVFDLLFWGEEAMLSQPFAQRLQAIH----ARVMPAIEAGKASGTLHPGRYLPVVGKKFYRREDLHRLFARVQEEEGHRVYRDATCVSHYFAYLGLGAREGGGXXXXXXXXXXXARVWSVQECLSRYYHKTDGIVFQPDVPYRCGTDTRFFKWKWLDTVTIDFALTLTP-----------------YRVLCGGGATGS-LDLTKQVSLEAQDLRRLRADMAASRCRIAELGFSIATGMWTYKMLRPDKTDPNYFTTVCTTMLELAEGV 695          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A7S3GU40_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU40_9STRA)

HSP 1 Score: 251 bits (640), Expect = 7.510e-68
Identity = 208/685 (30.36%), Postives = 321/685 (46.86%), Query Frame = 2
Query:  224 ASLEIEVRVGLISLPDRLQRATPGVPGSGAVQIDPNLMRQRGLRFVSGVSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDGINP-PYCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQPG---SNEPPQG---WSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRG-----GGMNEVREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPELDEGVRQAVLAACARFKRPTG-----KGSSFPGAQPVNMCKRNVLDVQRGSYFIAEKTDGVRYLMMIVPAPQGGGET---CVLVDRSMNVFRVTGGGFLAGVLGSGTVLDGELVHNRTMRKAIFVAFDVLQHRERSLVSCGFLERLSVLKKGVIAEYVDRV-----REGGAEAAPD-------GHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSL-----------HHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVY-----PATAAGXXXXXXXXXXXXXGVRL-CSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTV--------IAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPS-SDDWARQETTMRKRAVQWQ 2104
            +++E+EVRVG+I   D  +R     PG  AV +DP       LRF +GV      R + ++  +         +++   +S    D R  ++        E+K+A  Q+N  L A  YD+R+  + E   AP      P    +  PP     W  +R K+R S+    +  +     WR D T V+ ++   G     G + +  EVE EL       WL     ++VI  T  +A  L HLL+   P E  +     +  +++      +       +P       K S F GA PVN+ ++N ++VQ+  YFI EK+DG+RYLM +VPAP+    +    VLVDRS  +F+  G   +   LG G +LDGELV NR++++ +F+ FD L +R + LV   F ERL  ++  ++  +   +     +E    A  +         L LV K F PR+    L  ++ +E   R++ D E              HHK+DG IFQP+A Y       L+KWKW +L SVDL++       + AAG             G ++ C++ G+         +V L E D  RL+ADM+S            I EVA D   G+W Y+ LR DKD+PNFI +V+   +E AE +S EEL+Y +   +    +D+  Q   M+ + + WQ
Sbjct:   55 SAIEVEVRVGMIV--DNYRRWKSRSPGKTAVVVDPR--SNPSLRFRAGVDHIFARRLRSKLSDQMFHCAVQPLQIMRCDES----DNRWTVNSKGELMMAEKKQALDQINLALIAHEYDIRINVATE-IAAPLTDSTDPAVLAATGPPVNRALWVVERRKKRTSY----TCKDPHMNKWRIDYTEVDIITKAAGAATPSGKIKKEIEVEFELEHAPMLEWLRERDDQQVINKTKVLAGQLIHLLDYCIPFESEAEKEASLLVVNDTYFDMEINKLDMMVKPDAVQAGRKKSDFIGAMPVNLTRQNFMEVQKTDYFITEKSDGIRYLMYVVPAPRATDPSDCIAVLVDRSKTIFKFRGCETVGKALGVGVILDGELVFNRSLKENVFLVFDALLYRGQPLVDKLFGERLETIRTTILTAFARNLPAVLAQESALNAQRNLPTLPGANPLQLVRKVFVPRREFNTLLSKMRLEEGERVFFDPENRAAAPGAPPTSRRHHKSDGFIFQPNARYVFSKHYELMKWKWAELRSVDLQIEIPMEATSNAAGGDWPIYLKCGGPDGTQINCTKRGDT--------NVGLGEFDTYRLLADMESPELANRNTQSPPIVEVAYDISIGMWSYLHLRKDKDKPNFIDSVMGVFMEQAESISIEELEYSLSASSHGLENDYEVQIEKMKAKLLVWQ 718          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: K0TI32_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI32_THAOC)

HSP 1 Score: 249 bits (637), Expect = 3.470e-67
Identity = 194/576 (33.68%), Postives = 287/576 (49.83%), Query Frame = 2
Query:  518 CERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQ----SGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRGGGMNEVR-EVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPE-LDEGVRQAVLAACARFKR--------------PTGKGS--------SFPGAQPVNMCKRNVLDVQR--GSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNV--------FRVTGGGFLAGVLGS---GTVLDGELVHNRTMRKAIFVAFDVLQ-HRERSLVSCGFLERLSVLKKG--VIAEYVDRVREGGAEAAPDGHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYKR 2113
             E+KE    ++  L AAPYDLR+  + E+ L  +Q    + L+PG       W+ KR KRR S+  A     D+++ WR D+T V   +  +     E+  E+ELEL      R +  +       ++  +A  L ++L+ +NP   +  +   + E  ++   +  +  C   KR              PTG  S        SF G  PVN  + N+ +VQR  G YF++EKTDGVRYLM+        G TCVLVDR+ +          R+ G   +  V+ +   GTVLDGE+V +R +R+ IF+ FDVL       ++   F +RL  L+    V  E    V    A   P   L LV K F  RQ++ +L   V  E   RIY+  E + HH TDGIIFQP++ Y  GTD  LLKWK++D  ++D+++ P  +               GV      G  G  V+++R + L   +  RL AD   + + I EV  DPG+G W Y  +RPDK  PN I+TV+ T++E+AE LS EEL+YRM V   + D + ++  TM K+ +  Q +R
Sbjct:  214 AEKKEKLATIDLALPAAPYDLRLTCATERALTDQQYPNVASLRPG-------WTTKRIKRRRSYVRA-----DKSFAWRMDVTEV--TAESKNSSHPEIGYEIELELGASMTQRLIQ-SDDGSARKLSETLAQQLWYMLQQLNPTSDVLEVEEFLQEQTNKDATKLAIGQCGSIKRFMDSKFQAWRSAIAPTGGKSNEEVQGPRSFLGCMPVNFARHNIEEVQRSEGGYFLSEKTDGVRYLMVFT------GSTCVLVDRASHESGKAYQPKHRMAGDEPMDSVVKAIKPGTVLDGEVVVHRKLRRPIFIVFDVLAISATEPILHLPFEQRLVHLRSASFVKPEIKMDVFNPQAVTNPQVALPLVRKNFVKRQDLDNLLSLVTEERGLRIYRYGE-THHHLTDGIIFQPNSAYVCGTDVNLLKWKYLDTVTIDVQILPPASHRRGNGGQDDNVLNVGVM-----GEEGTIVNMTRYLRLPNSERLRLEADRDETGSNICEVGFDPGTGEWYYRTMRPDKVAPNHISTVLGTLLELAESLSTEELRYRMSVPPGTRDTYTKEVRTMEKQLLDHQRRR 762          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A7S2KVX1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVX1_9STRA)

HSP 1 Score: 235 bits (600), Expect = 6.740e-63
Identity = 207/661 (31.32%), Postives = 306/661 (46.29%), Query Frame = 2
Query:  302 GSGAVQIDPNLMRQRGLRFVSG-VSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDGINPPY----------CERKEARQQ--VNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGS--NEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRGGGMNE--VREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPE-LDEGVRQAVLAACARFKR------------------PT---GKGSSFPGAQPVNMCKRNVLDVQR--GSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMN--------VFRVTGGGFLAGVLGS---GTVLDGELVHNRTMRKAIFVAFDVLQHRERSLVSCGF------LERLSVLKKGVIAEYVDRVREGGAEAAPDGHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYK 2110
            GSG  +I P + +   +R  SG V+P    R  EE            +E +    +G+  D+RV   G    +           ERK+ +    ++  L +A YDLR+ A+ E         ++ G+    PP GW+ KR KRR S++       D+ + W+ D+T V  VS   G   +E  V E+ELEL   +  + +         A+  Q++  L  +L  INPL  +  I + + E  D    +  LA C   K+                  PT    K   F G  P+N  + N+ +VQR  G YF++EKTDGVRYLM+        G+T VLVDR             + T    +A ++     GTVLDGE+V +R +R+ +F+ FDV+   +  LV   F      +E  S  KKG   +  D         A    L L+ K F  R  + +L   V  E   R+Y+  E + HH TDGIIFQP+ PY +GTD  LLKWK++D  ++D+ + P                  G R+    G  G  VD++R + L   +  RL AD   S   IAEV  DP +G W Y+ +RPDK   N I+TV+ T++E+AE L   EL+YRM + +   D + +    M+K+ +  Q K
Sbjct:   43 GSGLSEISP-ISQAYAVRSSSGTVTPQHIKRDLEE------------EETIETVFAGYSGDRRVCYPGEENAWKRKNQRVVGKMERKQRQTDGMMDLSLPSASYDLRLMAATEH--------VEDGNVTYPPPSGWTTKRLKRRRSYRR-----RDKTFAWQLDITEVTTVSAAGGKPSDEAVVFEIELELSQSSTQKLIQAPDDAAARALAKQLSQQLWWMLSQINPLSDVLDIESYLREHSDPAAVKVALAQCNHMKKFLSTKEWSSAITSDGQPSPTISHNKTLKFIGCMPINFSRHNIEEVQRSDGDYFLSEKTDGVRYLMIFT------GKTVVLVDRRNEGKQPVPAPSAKDTNADPMAPLIPHVQPGTVLDGEVVIHRQLRRPMFIVFDVMCCGQTPLVQYPFGERRKAIENASFRKKGAAVDVFDPALLKNPSIA----LPLIRKNFVARTALDNLLSHVSEEKGLRLYRYGE-THHHLTDGIIFQPNRPYVMGTDHHLLKWKYLDTVTIDVELLPPL--------DNFSGDGDGWRV-GVLGEEGTMVDMTRFIKLPVSERLRLEADRHESGAKIAEVGFDPETGEWYYLTMRPDKIASNHISTVLGTLLELAECLGTNELRYRMNITSGGRDTYRKDTRAMQKQLLDHQRK 657          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A7S3ZLY4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLY4_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.710e-62
Identity = 224/713 (31.42%), Postives = 326/713 (45.72%), Query Frame = 2
Query:  140 QGDDLFQALATNLNALHQRLCREPAE-VRASLEIEVRVGLI--------SLPDRLQRATPGVPGSGAVQIDPNLMRQRGLRFVSGVSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDGINPPYCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVE---------------EVSPHRG---GGMNEVREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPV---PELDEGVRQAVLAACARFKRPTGKGSSFPGAQPVNMCKRNVLDVQRGSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDR--SMNVFRVTGGGFLAGVLGSGTVLDGELVHNRTMRKAIFVAFDVLQHRERSLVSCGFLER-------------LSVLKKGVIAEYVDRVREGGA-------EAAPDGHLM-------LVSKKFFPRQNIMDLFRQVHVEGQH--------RIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADM--QSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQE 2071
            +G ++  +LA  LNAL     R  A+ +  ++E+E R+G+         S     +R   G  G GAV I  +        F  GVS   F   +E V R   V+   S E  +  ++G     R+V+        E+K      +F L +A YD+R+Q + E  L P     +P        W+ +R K+R S   AS         WR DLT V                EV+  +G      + V EVE+EL   A  RWL+L  P  V      +A  L  +L  +NP+E      NP    P++ + + ++VL          G+  +FPGA PV + +RN+ DV R +YF+AEK+DG R L++ V     G   C LVDR  ++ V RVTGG      L  GTVLDGE+V N   +  +F+ FDVL + +  +    F +R             LS       A   D + + G+        + P+  L+       LV K+F   +   ++  ++  +           R+ +D     H ++DG++F PD PY  GTD  LLKWK  D  +VDL V     AG                      ++G +VD S+ VHLSE D ARL AD+  + SR  +AE+ LD  SGLWVY  +RPDK+  N   T +ST++  AE  SE EL+YR+   T   DDWA++E
Sbjct:   52 KGANVEASLANALNAL-----RTAAQGIGGAIEVECRIGVACEKGAGLGSATAAAKRFVAGRRGCGAVAIGGS------SDFCPGVSEVSFREAQENVERCQSVSWTESVESTFGAETGP----RLVVSSDGRQRLEQKSKLDTHDFALPSAAYDVRLQVASEANL-PLAQLPEPTKKH----WTFRRIKKRRSCAPASFRG------WRVDLTEVTRHDYTVDKLTTQTALEVAKGKGPPPASSSTVYEVEVELDSAATQRWLAL--PMGVSQEEKMIADVLSAVLRVLNPVEATDTRGNPAVPAPKMLQNIAKSVLRGIQ-----AGQSRAFPGAMPVGLARRNMKDV-RSNYFVAEKSDGERRLLVAVHDKAAGKVRCCLVDRKGTVEVARVTGG----KPLKPGTVLDGEIVRNLAHQAPVFLIFDVLHNGQEDVSQATFSQRYFGGLSSKTLKDCLSTKCPPPTATKEDGMHDDGSFQVAVHQPSDPNDALLKDAPALPLVPKRFVSSRRCGEILAKITQDNDEEGSVPFGCRVSRDGAFRTH-RSDGLVFVPDTPYIAGTDHSLLKWKARDQLTVDLTV---RGAGKGEGLGFFA-----------VDDDGGDVDCSKHVHLSEQDAARLRADVADRPSRVTVAELGLDSSSGLWVYHAVRPDKEGGNHFDTFLSTLLLHAESPSEPELRYRLSSPT---DDWAKRE 708          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A7S3L5K2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5K2_9STRA)

HSP 1 Score: 234 bits (597), Expect = 7.460e-62
Identity = 218/721 (30.24%), Postives = 334/721 (46.32%), Query Frame = 2
Query:  233 EIEVRVGLISLPDRLQR-------ATPGVPGSGAVQ-------IDPNLMRQRG-------------LRFVSGVSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDGINPPY------CERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRGGGMNEV--REVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPL-EPLSAIANPVPELDEGVRQAVLAACARFKR------------------------PTGKGSS---------FPGAQPVNMCKRNVLDVQRG---SYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMN-------VFRVTGGGFLAGVLG---SGTVLDGELVHNRT---MRKAIFVAFDVLQ-HRERSLVSCGFLERLSVLKKGVIAEYVDRVREGGAEAA---PDGHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEE---VDLSRSVHLSEHDEARLVADMQSSRTV--IAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYKR 2113
            E+E R+G++ +P  L+R       + P   GS AV        ++P+   + G             +  ++ ++  +      E+ R   + E +  E VY+   G+  ++R+  +G++P         E K   + ++  L AAPYD+RV  S E+ +   Q+ L+    EP   W  KR KRR+S+K      +D    W+ D+T V   S    G +      E+E+EL      + ++  +PE++  +T+ +A    H+LE +NPL + L A  +     D    Q  LA C   +R                        P G  ++         F G  PVN  + ++ ++Q+    SYF +EKTDGVR+L++ +      G T VLVDR+M        +         A VL     GTVLDGE+V NR      + IF+ FDVL     +S++   F +RLS LK+          R+  AE+A   P   L LV K F PR  + DL  +V  E   RIY     + +H TDGIIFQP+ PY  GTD  LLKWK++D  ++D+ +    A                       G  GEE   VDL+R V L   +  ++ AD  ++  +  IAEV LDP SG W Y+  RPDK  PN I TV+ +++E+AE ++ EEL+YRM V   + D + +    M ++ +  Q KR
Sbjct:   68 EVEARLGILKVPGSLRRVVSTGAKSVPKPDGSMAVAPAFDCSTVEPHCAMESGVSRRHATQWTSTGISEINAITSALLVTNPNEL-RSKPIQETSMTETVYI---GYADERRICFNGLHPEQYDGLGKLETKTKLETLDLTLPAAPYDIRVTLSTEKIM---QNNLE----EPLNSWKSKRIKRRWSYKR-----KDNKMFWQIDVTEVTTTSNPENGPVTTTVDHEIEMELQESIMLQLVNEENPEKLHILTTNLAKQAWHILERLNPLADALDAEESLTEHSDPEAVQLALAQCGALRRHADVHRKSGGEYTGAYANPLPYNSPIGNPNASIAALANHNFLGCMPVNFTRHDLDNLQKSAPASYFCSEKTDGVRHLLVFL------GHTAVLVDRAMKGKMPIPILQPAKPEDPFASVLDLIQPGTVLDGEVVMNRKGGPKPRPIFIVFDVLSISTTQSIMHLPFEQRLSHLKRATFRTPTAN-RDMFAESAIVNPRVPLPLVRKNFVPRTGVDDLCAKVVEERGMRIYSSGV-AHNHLTDGIIFQPNLPYVCGTDTNLLKWKYLDTVTIDVELLQLRANDPDDFL--------------RTGCLGEEQTRVDLTRHVSLPISERLKMEADKYAAGGLARIAEVGLDPESGEWYYLTFRPDKTIPNHIGTVLGSLMELAEHVTTEELRYRMSVPAGARDHYRKDLRGMMRQLLDHQRKR 750          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A7S1G2I8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2I8_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.670e-61
Identity = 211/720 (29.31%), Postives = 335/720 (46.53%), Query Frame = 2
Query:  173 NLNALHQRLCREPAEVRAS-LEIEVRVGLISLPDRLQRATPG-VPGSGAVQI--DPNLMRQR-------GLRFVSGVS---------------PPVFA-------RTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDGINPPYCERKEARQQ-----VNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRGGGMNEVREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINPL--EPLSAIANPVPELDEG----VRQAVLAACARFKR---------PTGKGS---------SFPGAQPVNMCKRNVLDVQRGS--YFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNVFRVTGG------GFLAGVLGSGTVLDGELVHNRTMRKAIFVAFDVL-QHRERSLVSCGFLERLSVLKKGVIAEYVDRVREGGAEAAPDGHLM--LVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYKR 2113
            N   L +R       VR+S LE+E R+G++          PG +  SGA  +  D N            G  FV G+S                P+ A       +T +++  K  + E    E VY   +G+  ++R+   G+       K  R++     ++  L ++PYDLRV  + E+    E   +   S  PP G+S +R KRR S+       +++ +LW+ D+T V        G  +  +E+E+EL   A  + +++   +       Q+A+ L  +++ INP     L ++ + +    +G    +  A L++   F++         P G  S          F G  P+N  + N+ +VQ G   YFI+EKTDGVRYLM+        G+T VLVDR+M    + G        +L  ++  GTV DGE+V NR  ++ +F+ FDV+     + +    F ERL  LKK             G     D  ++  L+ K F  R ++ +L  +V+     R Y + +   H  TDGIIFQPD PY +GTD  L KWK++D  ++D+ + P    G              +R+ +  G++G  VD++R V L   +  RL AD   S   IAEV  DP +G W Y  +RPDK   N I+TVI T++E+AEG+   EL+YRM V     D + ++  +M+ + + +Q KR
Sbjct:   51 NCRTLGRRKAGGSLPVRSSPLEVEARLGVLQSQVPTVSGHPGRLMSSGAKPVGNDGNFATAFYCNANGIGAHFVGGISHGHAVHWTSGGLSENSPISAALGVAAEKTIKQI--KEALEETELTETVY---AGYKNNRRIAFPGLPSRGSTGKRERKEKMCAPLDLCLPSSPYDLRVGCAVEET---EDGSV---SFPPPAGYSTRRIKRRRSYTR-----KNKTFLWQLDITEVT-----TDGDRHSTQEIEMELSQEATVKLINVDDDQAATKYAQQLASQLKWMVDQINPSGGADLGSVEDQMKPHPDGEACEIAMAQLSSLKHFQKTKDWRGAVAPEGGASPDMRNDSRLKFIGCMPINFGRHNISEVQNGESEYFISEKTDGVRYLMVFT------GKTVVLVDRAMKGNTLHGPPGKDPFAYLVPLIRPGTVFDGEVVLNRKFKRPVFIVFDVMCVGASQPVTDLKFSERLQHLKKASFRTKTANADMFGENLVKDKSVVCPLLRKNFVRRIDLDNLLSRVNEAKGIRTYVNSDAHCH-LTDGIIFQPDTPYAMGTDVRLFKWKYLDTVTIDVEILP-DHGGYYPGKTNEDNDTPPLRV-AVVGDDGSMVDMTRHVRLPTSERMRLEADRAESGAKIAEVGFDPETGEWYYRNMRPDKVASNHISTVIGTILELAEGMGTVELRYRMSVAEGMRDTYRKEVRSMQSQLLDFQRKR 740          
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Match: A0A7S3Q9C1_9STRA (mRNA guanylyltransferase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9C1_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.310e-59
Identity = 200/658 (30.40%), Postives = 300/658 (45.59%), Query Frame = 2
Query:  347 GLRFVSGVSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQRVVMDG---INPP--------YCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQPGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVE------EVSPHRGGGMNEVREVELELLPRARD-RWLSLTHPEEVIAMTSQVATHLCHLLESINPLEPLSAIANPVPEL-DEGVRQAVLAACARFKR----------------------PTGKGSS---------FPGAQPVNMCKRNVLDVQR----GSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNVFRVTGGGF---------LAGVLG---SGTVLDGELVHNRTMRKAIFVAFDVL-QHRERSLVSCGFLERLSVLKKGVI-AEYVDR-VREGGAEAAPDGHLMLVSKKFFPRQNIMDLFRQVHVEGQHRIYKDDERSLH-HKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVDLRVYPATAAGXXXXXXXXXXXXXGVRLCSEAGNNGEEVDLSRSVHLSEHDEARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMVEVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYK 2110
            GL   S +S          V R     +   KE+V    +G+  + RV   G   IN            E K     ++  L AA YDLR+  S E+ L  + S +     EPP+GWS +R KRR S+        D+++ W+ D+T V         S                 L  A   + ++   P++ +A+ + ++  L  +L  INPL  +  +   + +  D    Q  LA C   K+                      P+GK  +         FPG  PVN  + N+ +VQR    G Y+++EKTDGVR+LM+        G T VLVDR+M   ++              +A V+     GTVLDGE+V +R +R+ +F+ FDVL     + ++   F +RL  L++    +E  DR +    A   P   + LV K F  R  + +L   V  E   R Y++ E  +H H TDGIIFQP+APY  GTD  LLKWK++D  ++D+++ P                       +  G  G  V++SR +HL   +  RL AD   S   I EV L+P +G W Y+ +RPDK  PN I+TV+ T++E+AE L  EEL+YRM V +   D + +    M+K+ +  Q K
Sbjct:  153 GLSDTSSISSAFGVTDASHVKR-----DLVEKELVETVFAGYPTNNRVCFPGDHKINSAGKDTGKRGCMENKSKLTTMDVALPAAAYDLRLNLSTERTL--DHSVI-----EPPRGWSTRRLKRRRSYTR-----RDQSFAWQLDVTEVTTNDVQTSASXXXXXXXXXXXXXXXXXLNAATTLKLVNENDPKKAMALCTSLSQQLWWMLGQINPLSDVLDVEEYIRDHPDTSAVQLALAQCGSLKKFMDSRRGGGGGNSVSGWTSAIAPSGKSPTPSAGLANIKFPGCMPVNFSRHNIEEVQRSDDQGGYYLSEKTDGVRHLMVFT------GNTVVLVDRAMKGKQIVPRNLDDDKKKLDPMASVIPLIKPGTVLDGEVVMHRKLRRPLFIVFDVLCLSATQPILHLPFAQRLHFLRRASFRSETADRDMFATSAVRDPSIAMPLVRKNFVRRIELDELLSHVVEEKGMRSYRNGE--VHNHLTDGIIFQPNAPYVCGTDHSLLKWKYLDTVTIDVQIMPPGYGQRSYGNNGGNDNDDSKLTVAVTGEEGSMVEMSRFIHLPRSELRRLEADRAESGANIVEVGLEPTTGEWYYLTMRPDKIAPNHISTVMGTLMELAESLGTEELRYRMSVPSGGRDTYRKDMRKMQKQLLDHQRK 785          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.276.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT43_ECTSI0.000e+072.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHC0_9STRA1.510e-9531.86mRNA_cap_enzyme domain-containing protein n=1 Tax=... [more]
A0A4D9CWT2_9STRA1.810e-7631.39Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3GU40_9STRA7.510e-6830.36Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K0TI32_THAOC3.470e-6733.68Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2KVX1_9STRA6.740e-6331.32Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3ZLY4_9STRA2.710e-6231.42Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3L5K2_9STRA7.460e-6230.24Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1G2I8_9STRA1.670e-6129.31Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3Q9C1_9STRA1.310e-5930.40mRNA guanylyltransferase n=1 Tax=Chaetoceros debil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1278178..1281867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT43
PFAMsDSPc,mRNA_cap_C,mRNA_cap_enzyme,mRNA_triPase
Model size2782
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00987,ko:K01104,ko:K08244,ko:K13917,ko:K14165
KEGG ReactionR03828,R10814
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.0
EggNOG OGsCOG5226@1|root,KOG2386@2759|Eukaryota
Ec32 ortholog descriptionmRNA capping enzyme
Ec32 orthologEc-04_002760.1
EC2.7.7.50,2.7.9.4,3.1.3.16,3.1.3.48
DescriptionmRNA guanylyltransferase activity
Cds size2145
COG categoryA
BRITEko00000,ko00001,ko01000,ko01009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.7792094-UTR-P-littoralis_Contig1:1278177..12782111680789318.7792094-UTR-P-littoralis_Contig1:1278177..1278211Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1278178..1278211 +
1680789318.8237102-UTR-P-littoralis_Contig1:1281264..12818671680789318.8237102-UTR-P-littoralis_Contig1:1281264..1281867Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1281265..1281867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.7937744-CDS-P-littoralis_Contig1:1278211..12797051680789318.7937744-CDS-P-littoralis_Contig1:1278211..1279705Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1278212..1279705 +
1680789318.8023705-CDS-P-littoralis_Contig1:1280031..12804901680789318.8023705-CDS-P-littoralis_Contig1:1280031..1280490Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1280032..1280490 +
1680789318.814248-CDS-P-littoralis_Contig1:1281072..12812641680789318.814248-CDS-P-littoralis_Contig1:1281072..1281264Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1281073..1281264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.276.2prot_P-littoralis_Contig1.276.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1278212..1281264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.276.2

>prot_P-littoralis_Contig1.276.2 ID=prot_P-littoralis_Contig1.276.2|Name=mRNA_P-littoralis_Contig1.276.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=715bp
MTKKMDLDLGDLMSDAEKTHSSLGKRPAPSSKPQPQGDDLFQALATNLNA
LHQRLCREPAEVRASLEIEVRVGLISLPDRLQRATPGVPGSGAVQIDPNL
MRQRGLRFVSGVSPPVFARTKEEVGRKYGVAERASKEVVYVYDSGHMRDQ
RVVMDGINPPYCERKEARQQVNFQLAAAPYDLRVQASQEQRLAPEQSGLQ
PGSNEPPQGWSGKRTKRRFSWKSASSMSEDEAWLWRADLTLVEEVSPHRG
GGMNEVREVELELLPRARDRWLSLTHPEEVIAMTSQVATHLCHLLESINP
LEPLSAIANPVPELDEGVRQAVLAACARFKRPTGKGSSFPGAQPVNMCKR
NVLDVQRGSYFIAEKTDGVRYLMMIVPAPQGGGETCVLVDRSMNVFRVTG
GGFLAGVLGSGTVLDGELVHNRTMRKAIFVAFDVLQHRERSLVSCGFLER
LSVLKKGVIAEYVDRVREGGAEAAPDGHLMLVSKKFFPRQNIMDLFRQVH
VEGQHRIYKDDERSLHHKTDGIIFQPDAPYKVGTDPGLLKWKWIDLASVD
LRVYPATAAGAGRGGAGRGGGGGGVRLCSEAGNNGEEVDLSRSVHLSEHD
EARLVADMQSSRTVIAEVALDPGSGLWVYMGLRPDKDRPNFITTVISTMV
EVAEGLSEEELKYRMLVDTPSSDDWARQETTMRKRAVQWQYKRKAAAQQH
QQREHQQPPPPPPR*
back to top

mRNA from alignment at P-littoralis_Contig1:1278178..1281867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.276.2 ID=mRNA_P-littoralis_Contig1.276.2|Name=mRNA_P-littoralis_Contig1.276.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3690bp|location=Sequence derived from alignment at P-littoralis_Contig1:1278178..1281867+ (Pylaiella littoralis U1_48)
ACACACCAGCAGTGCACCCAGAAGCTCATGAAACATGACCAAGAAAATGG ACCTGGATCTCGGAGACCTCATGAGCGACGCCGAGAAGACCCACTCCAGC CTCGGTAAGCGGCCGGCTCCCTCTTCGAAGCCGCAGCCGCAAGGGGATGA TCTTTTCCAGGCGCTCGCGACGAACCTGAACGCCCTGCACCAGCGTCTGT GCCGTGAGCCCGCGGAGGTGCGCGCCAGCCTCGAGATCGAGGTGCGAGTG GGGCTCATTTCCCTGCCCGATCGACTCCAGAGGGCCACCCCGGGCGTGCC AGGGTCGGGAGCTGTCCAGATCGACCCGAACCTCATGCGGCAGCGCGGGC TGCGGTTCGTTTCCGGGGTGAGCCCTCCTGTCTTCGCGAGGACCAAGGAG GAAGTCGGCCGCAAGTACGGAGTCGCCGAGCGGGCCAGCAAGGAGGTTGT GTACGTCTACGACTCCGGGCACATGCGAGACCAGCGGGTGGTCATGGACG GTATCAACCCGCCCTACTGCGAGCGGAAGGAGGCACGGCAGCAGGTGAAC TTTCAGCTGGCGGCGGCACCGTACGACCTGCGCGTCCAGGCGTCCCAGGA GCAGCGGTTAGCTCCCGAGCAGTCTGGCTTGCAGCCGGGCAGCAACGAGC CTCCGCAGGGCTGGTCCGGCAAGAGAACCAAGCGGCGATTCTCGTGGAAG TCCGCCTCGAGCATGTCTGAGGATGAGGCGTGGCTGTGGCGGGCGGACCT CACTCTCGTCGAGGAAGTTAGCCCCCACCGCGGCGGTGGCATGAACGAAG TCCGGGAGGTGGAGCTCGAGCTGCTGCCGAGAGCGAGGGACCGCTGGCTG TCGCTGACCCATCCGGAGGAGGTTATCGCCATGACCTCGCAGGTGGCGAC GCACCTGTGCCATCTGCTGGAGTCAATCAACCCCCTGGAGCCCCTGTCGG CAATCGCTAACCCGGTGCCGGAGCTGGACGAAGGCGTCCGCCAGGCCGTC CTCGCGGCGTGCGCCCGGTTCAAGAGACCAACGGGAAAGGGTTCCAGCTT CCCGGGAGCGCAGCCGGTCAACATGTGCAAGCGGAACGTTCTGGACGTGC AGCGGGGCTCTTACTTTATCGCTGAGAAAACGGACGGGGTGCGGTACCTC ATGATGATCGTACCGGCGCCGCAGGGGGGAGGAGAGACCTGCGTCCTCGT GGACCGGTCGATGAACGTGTTTCGAGTCACCGGGGGCGGGTTTCTGGCTG GAGTTTTGGGGAGCGGCACGGTCCTGGACGGGGAACTCGTGCACAACCGC ACCATGCGGAAGGCCATCTTTGTTGCTTTCGACGTTCTGCAACATCGCGA GCGCAGCCTGGTGTCCTGCGGGTTTTTGGAGCGGTTATCGGTCCTGAAGA AGGGGGTCATTGCCGAGTACGTGGACCGGGTCCGGGAGGGCGGGGCCGAG GCCGCTCCGGACGGCCACCTCATGCTCGTCTCCAAGAAGTTCTTCCCACG CCAAAATATCATGGACTTATTCCGCCAGGTGTGTTTGTGTGTGCGCGCGT TGAACGAGCCCTTCTCTTTTGAGTCTTTGATGATGCGCATATCACATGAT CCTGCAGTGCGTATTATCGTGGTGTGGCTTATTGGTCTCATCGGACGTTG TTTTGATCACGAACGCAGATAAAATGTACCGTTTATTGAACACAATCCCA CGGTTGTTCATATTGGTACGAGACGAAAGCAAAGTGTGGTGCTCAAGATC AATCGGCTACGAAGTACATTTTAAAGCGACGAAATTGTTCGGCGGTAGCG GTAGCGGTGGCGGTGGTGGCGATCACAATGATGTTTGTTCTGATGCATTC GTAGGTGCACGTCGAGGGCCAGCACCGCATCTACAAGGACGACGAGCGGT CGCTCCACCACAAGACTGACGGCATCATCTTCCAACCGGACGCGCCGTAC AAGGTAGGCACCGATCCAGGCCTGCTAAAATGGAAGTGGATAGACCTCGC CTCGGTGGACTTAAGGGTATACCCGGCAACAGCAGCAGGAGCAGGTAGAG GAGGGGCAGGAAGAGGAGGAGGAGGGGGAGGAGTGCGGCTTTGCTCCGAG GCCGGGAATAACGGTGAGGAAGTAGACCTCTCCAGGAGTGTCCACCTCTC GGAGCACGACGAGGCGCGACTGGTGGCCGACATGCAGAGCAGCCGCACTG TCATCGCGGAGGTTGCCCTCGATCCCGGGTCCGGGCTGTGGGTGTACATG GGGCTGAGGCCGGACAAGGACCGGCCGAACTTCATCACGACAGTTATTTC TACCATGGTAGAGGTGGGTCAGTCAGTCAGGCGTGCCCGTCGTGGGGTAT GGTACATACCTGGTACAGGAAAATATCCCACCTGCACCGCCCACATGAGA AGTCAAGCATATCTCGTTTAAATCTTGTTATCAAGGAGGGGTTCATCAGT ATGGACGCTCGCTGTCGTGGAGACAGAAAATTGCGATGTAACCACCCCCC CTGTCGATCACTCCGCCACAAGATGGAACTTTCTGTAGACCGCCGGGCCC GGTCGGTCAGCGGATAAGTAGCGTGAGACCGTCCGGACTACTGCGTCAGG GAGGGCTGTTTTGTTGGGGTCATTTTGTCTCCTCGTTTCCTTCCACTGAA GAAGAGACATCCCCGTTTCATTTGCAGTCTCATTTTGTTCTCGAGTCATT GGAAATGATACTACTGCAGGGGAGAGGCTGCTCTCGTGAAATCCGTTACT TGCTCCCCTCGGTCGAGTCGTTGCGATTCACAACGCCGAATAGTGTACTC TATAGGAGTTTGACATCCCCGTTCTCCCGCTACCGCTACCGCTGCCGCTC CCGGGTCCCACTTCCGCTTTGCCTTGGCACGGCCGACCGACTCAGGTGGC AGAAGGGCTTTCGGAGGAGGAGCTGAAGTACCGAATGCTGGTGGACACCC CCTCGTCCGATGACTGGGCCAGGCAGGAGACGACAATGCGCAAGCGAGCG GTCCAGTGGCAGTACAAGAGGAAGGCAGCGGCGCAGCAGCACCAGCAACG AGAGCACCAGCAGCCGCCGCCACCGCCACCACGGTAGCAGAACTAGCAGC AGAACAAGGATTAGAGGTTTGGGGAAAGTGGGGTACTAGATATGGAAAGG AGGAACGCAAGTTGTGTTGAGAAGGTGGTGATGGTGGTGGCGGCGCCGGT AGCGCGGATTTTGCCGGCGGCAATCAACCGCTATGTGGTGTATCGGTAGG ATGGTGTCTTGTGTTTGTTGACCGTTGTGTTTTGGCGGGTGCTCCGTGTT TGTGTGCGGTTCTTTGTTCGCCATGGCGACTGATTCTGTTCGCCTTCTGC GTTGTCGATGCAGACGCGGCGGTGTTTTCGTGTTTTGTTTACCCGAAATA TACTGCTGTTGTTCGGCGCAACGTGTGTGAGATCGATGGGGGCTTTGAAT TGGGCTGGTGCACGCGAGGAACCGGTGAGGTGTGAACGTAGCGTTGCTTT GCCTTCCCGTGGTTATCACGTAGATTGTCAAATGATAAAGGTAAGGTGGC AGAACCTTACTTGCATCCCGAATGCAACATCGAAAACGAGCGAAAGAAGA AACGCTTTTCATTATGGGCGGCGCACGGTCTCTGGACAGGAGGTTAATTG ATGCCTGCTTTTCGCGCCCTCTGAGATACTTGGGTGGCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1278178..1281867+

>mRNA_P-littoralis_Contig1.276.2 ID=mRNA_P-littoralis_Contig1.276.2|Name=mRNA_P-littoralis_Contig1.276.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2145bp|location=Sequence derived from alignment at P-littoralis_Contig1:1278178..1281867+ (Pylaiella littoralis U1_48)
ATGACCAAGAAAATGGACCTGGATCTCGGAGACCTCATGAGCGACGCCGA
GAAGACCCACTCCAGCCTCGGTAAGCGGCCGGCTCCCTCTTCGAAGCCGC
AGCCGCAAGGGGATGATCTTTTCCAGGCGCTCGCGACGAACCTGAACGCC
CTGCACCAGCGTCTGTGCCGTGAGCCCGCGGAGGTGCGCGCCAGCCTCGA
GATCGAGGTGCGAGTGGGGCTCATTTCCCTGCCCGATCGACTCCAGAGGG
CCACCCCGGGCGTGCCAGGGTCGGGAGCTGTCCAGATCGACCCGAACCTC
ATGCGGCAGCGCGGGCTGCGGTTCGTTTCCGGGGTGAGCCCTCCTGTCTT
CGCGAGGACCAAGGAGGAAGTCGGCCGCAAGTACGGAGTCGCCGAGCGGG
CCAGCAAGGAGGTTGTGTACGTCTACGACTCCGGGCACATGCGAGACCAG
CGGGTGGTCATGGACGGTATCAACCCGCCCTACTGCGAGCGGAAGGAGGC
ACGGCAGCAGGTGAACTTTCAGCTGGCGGCGGCACCGTACGACCTGCGCG
TCCAGGCGTCCCAGGAGCAGCGGTTAGCTCCCGAGCAGTCTGGCTTGCAG
CCGGGCAGCAACGAGCCTCCGCAGGGCTGGTCCGGCAAGAGAACCAAGCG
GCGATTCTCGTGGAAGTCCGCCTCGAGCATGTCTGAGGATGAGGCGTGGC
TGTGGCGGGCGGACCTCACTCTCGTCGAGGAAGTTAGCCCCCACCGCGGC
GGTGGCATGAACGAAGTCCGGGAGGTGGAGCTCGAGCTGCTGCCGAGAGC
GAGGGACCGCTGGCTGTCGCTGACCCATCCGGAGGAGGTTATCGCCATGA
CCTCGCAGGTGGCGACGCACCTGTGCCATCTGCTGGAGTCAATCAACCCC
CTGGAGCCCCTGTCGGCAATCGCTAACCCGGTGCCGGAGCTGGACGAAGG
CGTCCGCCAGGCCGTCCTCGCGGCGTGCGCCCGGTTCAAGAGACCAACGG
GAAAGGGTTCCAGCTTCCCGGGAGCGCAGCCGGTCAACATGTGCAAGCGG
AACGTTCTGGACGTGCAGCGGGGCTCTTACTTTATCGCTGAGAAAACGGA
CGGGGTGCGGTACCTCATGATGATCGTACCGGCGCCGCAGGGGGGAGGAG
AGACCTGCGTCCTCGTGGACCGGTCGATGAACGTGTTTCGAGTCACCGGG
GGCGGGTTTCTGGCTGGAGTTTTGGGGAGCGGCACGGTCCTGGACGGGGA
ACTCGTGCACAACCGCACCATGCGGAAGGCCATCTTTGTTGCTTTCGACG
TTCTGCAACATCGCGAGCGCAGCCTGGTGTCCTGCGGGTTTTTGGAGCGG
TTATCGGTCCTGAAGAAGGGGGTCATTGCCGAGTACGTGGACCGGGTCCG
GGAGGGCGGGGCCGAGGCCGCTCCGGACGGCCACCTCATGCTCGTCTCCA
AGAAGTTCTTCCCACGCCAAAATATCATGGACTTATTCCGCCAGGTGCAC
GTCGAGGGCCAGCACCGCATCTACAAGGACGACGAGCGGTCGCTCCACCA
CAAGACTGACGGCATCATCTTCCAACCGGACGCGCCGTACAAGGTAGGCA
CCGATCCAGGCCTGCTAAAATGGAAGTGGATAGACCTCGCCTCGGTGGAC
TTAAGGGTATACCCGGCAACAGCAGCAGGAGCAGGTAGAGGAGGGGCAGG
AAGAGGAGGAGGAGGGGGAGGAGTGCGGCTTTGCTCCGAGGCCGGGAATA
ACGGTGAGGAAGTAGACCTCTCCAGGAGTGTCCACCTCTCGGAGCACGAC
GAGGCGCGACTGGTGGCCGACATGCAGAGCAGCCGCACTGTCATCGCGGA
GGTTGCCCTCGATCCCGGGTCCGGGCTGTGGGTGTACATGGGGCTGAGGC
CGGACAAGGACCGGCCGAACTTCATCACGACAGTTATTTCTACCATGGTA
GAGGTGGCAGAAGGGCTTTCGGAGGAGGAGCTGAAGTACCGAATGCTGGT
GGACACCCCCTCGTCCGATGACTGGGCCAGGCAGGAGACGACAATGCGCA
AGCGAGCGGTCCAGTGGCAGTACAAGAGGAAGGCAGCGGCGCAGCAGCAC
CAGCAACGAGAGCACCAGCAGCCGCCGCCACCGCCACCACGGTAG
back to top