mRNA_P-littoralis_Contig1.262.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.262.1
Unique NamemRNA_P-littoralis_Contig1.262.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.262.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 2.450e-78
Identity = 227/354 (64.12%), Postives = 249/354 (70.34%), Query Frame = 3 
Query:  432 MMKALKTSSDVDTVIFHNAGLTEASVAVLVGGLQLTSVRSLGLDYN-----LPSSPSLVRPSASERRLKAAMRAAEARGNTMENEVASTTPSSRPDFAGLVREGSKLKALSLRGNGLGDADAVDLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAEAFGLLLAGGYEISAVEQEKRALVEAKIVAQNKIAQDAMKKKKDARVETRLPLSTVVVQTAGDGINRAVAGGSRSLATLNLGENRELGAGGALLGLLARIVEARKEEVDKAASGAAGVVGSGAGAVVLQELHLARCQEYAEQEVGGGEHAAAAAGGDQAGMFAAMSLALRPTKVVL 1478
            MM+ALK SSDVDTV FHNAGLT AS+ VLV GL  T+VR   LDYN     L SS    RP  S     A   A    G +          S   +FAGLV EGSKLKALSLRGN LGDA+A+ LAE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GLLLAGGYE+   EQEKRA  + KI AQNK+A DAMKKKKDA+VETRLPLS V V+T  DG +RAVAGGSRSLA LNL +NR+LG GGAL GLL+RIV ARKEE  +A  GA    G+G G+VVLQELHL RCQ YAE+           AGG+     AAMS ALRPTKVV+
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFS----------SLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAG--FGAGGGSVVLQELHLTRCQGYAEE-----------AGGEDDTAIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI2.450e-7864.12Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1214787..1219909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT35
PFAMsLRR_6
Model size1917
Max annot lvl2759|Eukaryota
KEGG koko:K09257
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.75e-81
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size1374
COG categoryS
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.262.1prot_P-littoralis_Contig1.262.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1215223..1219555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.1341372-UTR-P-littoralis_Contig1:1214786..12152221680789318.1341372-UTR-P-littoralis_Contig1:1214786..1215222Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1214787..1215222 -
1680789318.1812477-UTR-P-littoralis_Contig1:1219555..12195791680789318.1812477-UTR-P-littoralis_Contig1:1219555..1219579Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1219556..1219579 -
1680789318.1891859-UTR-P-littoralis_Contig1:1219826..12199091680789318.1891859-UTR-P-littoralis_Contig1:1219826..1219909Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1219827..1219909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789318.1449072-CDS-P-littoralis_Contig1:1215222..12158411680789318.1449072-CDS-P-littoralis_Contig1:1215222..1215841Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1215223..1215841 -
1680789318.1547654-CDS-P-littoralis_Contig1:1216813..12169491680789318.1547654-CDS-P-littoralis_Contig1:1216813..1216949Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1216814..1216949 -
1680789318.1638129-CDS-P-littoralis_Contig1:1218662..12191171680789318.1638129-CDS-P-littoralis_Contig1:1218662..1219117Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1218663..1219117 -
1680789318.173255-CDS-P-littoralis_Contig1:1219391..12195551680789318.173255-CDS-P-littoralis_Contig1:1219391..1219555Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1219392..1219555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.262.1

>prot_P-littoralis_Contig1.262.1 ID=prot_P-littoralis_Contig1.262.1|Name=mRNA_P-littoralis_Contig1.262.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=458bp
MAEVDVLLCPSTKVAHSDPWRADKMDIAAAGMDWGAKDVQKSAGNFDADY
EALCRLFEVPAHPCLGSRRPKEATEGALDAKLEKPTSASKPSTIQLRNYT
VDLTTLHLMMKALKTSSDVDTVIFHNAGLTEASVAVLVGGLQLTSVRSLG
LDYNLPSSPSLVRPSASERRLKAAMRAAEARGNTMENEVASTTPSSRPDF
AGLVREGSKLKALSLRGNGLGDADAVDLAEAIEENTVLCSLNLFDNKITD
VGATTLAKTLRLNTVLRGLSLSRNSLTSASAEAFGLLLAGGYEISAVEQE
KRALVEAKIVAQNKIAQDAMKKKKDARVETRLPLSTVVVQTAGDGINRAV
AGGSRSLATLNLGENRELGAGGALLGLLARIVEARKEEVDKAASGAAGVV
GSGAGAVVLQELHLARCQEYAEQEVGGGEHAAAAAGGDQAGMFAAMSLAL
RPTKVVL*
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mRNA from alignment at P-littoralis_Contig1:1214787..1219909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.262.1 ID=mRNA_P-littoralis_Contig1.262.1|Name=mRNA_P-littoralis_Contig1.262.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5123bp|location=Sequence derived from alignment at P-littoralis_Contig1:1214787..1219909- (Pylaiella littoralis U1_48)
CAGATTCCCACAGGAACACAAGTCCTCTCGACGGCCGTCCCATAGCTATC
AAAGAGAGAGCCCCCACCTATAGTCTAGCCCAGGTGCGATTGGGAACCCT
ATCACCGCTGGTACTAGAGCGGAAGAGGGGGAGAGGGTCGCTCTATCAAG
CGCAGAAAATGCGGCGGAATACCTTGAACGTTGAACGTTGAACGGACTAA
CGTATGAACTGGGCTGTGAAATGTAAAATGTGGTGAACCTAAAAAATGGA
ATCGATAATCGAAACCGTTCCACCTAGTGCTGTTCTCTCTCCTCGGATTG
TGTGTTCGCCGTTCGTTGTGAGAACCTCAGCGAAAAGCATTGGACAAGGC
CGCGATGGCGGAGGTGGATGTATTGCTCTGTCCCAGTACAAAGGTGGCTC
ACAGTGATCCCTGGCGAGCCGACAAAATGGACATCGCAGCCGCGGGAATG
GATTGGGGTGCAAAGGATGTTCAAAAGTCTGCAGGAAACTTCGACGCCGA
CTACGAAGCTTTATGTCGGTAAGTGCTCTGCGACGATGACAAGGGTTTCG
ATTCCGATTAGCGTTAACTCCTGCCGTGGTTTCAGGCGCACAGCATAAAG
GTCTCGAGAAAAACATGCAATATGGAGCCAACGACCTCTGCTACACATCT
CGACCGGATGCTCGTGTCTCTATAACAAGAAGAGTCTATCTAGGTTTTTG
TGCTTCCATAATCTGGCCGTTCAGGTATCCCACCCGTGGAATTTTCGTGC
CCCCCGTACACACCGCCTTCCGTTATTCTTTCACTGATCAAGGTTGTTCG
AGGTCCCAGCGCATCCGTGTCTTGGGTCACGCCGGCCGAAAGAAGCTACC
GAAGGCGCTCTTGATGCCAAACTCGAGAAGCCCACTTCAGCCTCAAAACC
ATCCACCATTCAACTCCGGAACTATACCGTGGATCTCACGACCCTCCACC
TCATGATGAAGGCGCTAAAAACATCGTCCGACGTCGACACGGTCATCTTC
CACAACGCGGGGCTGACAGAAGCGTCCGTAGCTGTCCTCGTGGGAGGTCT
CCAGCTCACGAGTGTCCGCAGCCTCGGCCTGGACTATAACCTCCCGTCGT
CACCATCGCTCGTTAGGCCATCAGCATCAGAAAGACGTCTCAAAGCAGCA
ATGCGAGCGGCAGAAGCAAGGGGTAACACGATGGAAAATGAAGTTGCATC
TACCACTCCGTCTTCTCGTCCAGATTTTGCCGGACTCGTCAGAGAAGGTA
AGGTACGAACTCCTGAGTCCCGCCGTATCTCAGGTGAGCGACGGTTTTTT
TATGTCGGCGTCAGGTAAAAGGTGTCCTGGTAATGCTTGGAATGAAACAT
TTGTATCACAAAACTTGGTACAGATCTAGTAGGTTTAAATGATGATTGTG
TGTACTTGTAACACCTTCTGAAAGAGGGATTTTAGCCATGATACTAGAGA
GTTTGCGCAAAAGGATTTATTATCTCAAATATCCTTTCTTGAAAAAAAAA
ATATTAAGCGCGGTGAATAAGAATTCCTTTTAAATAAAATTTGAAAATGA
GTTTGCGCAAAAGGAATTCCCTATTGACAGAACACCCACACTCTCGTATG
CTAGTGCAGAGCAACAATCCAGACACACATGCCCACACATATCGTACGGC
TGACGATGTGCTGCTGCTGTAGGATAGCCAAGACAACGAGTCTTTGGTTC
AAGTAGTGGGGAAGGGTGCCGGGTCAAGCGAAGTGAATGCAAACTCAGGG
GTCACGGGCAGCAGGGATGGGGCAAGTTCGGCAGAGAGGCTGTGGTTGTG
GAAGAAGGCATGATTTGTGTGTGTCAACTATACTGCTGTCCTTTAACTGA
GTACAGAGCAGCTGACTGCTGTATGATACGTACGTGCTATTTTCAAGTGC
ATAAAAAAGAGGTCGTTTGCATTTTCATCGTGCTAGGTATAAACCTCGAG
CGATACTTCTCTCCACCGGTTGAATGAACCCACTTCCAACCCAACCTCCT
GCGGACGGAGAGCAATATACAGAGGAGACAGCAAAGAAGTTTTCGCCTTG
ATACGTGGTGTAGAGAGCGAGAGCGTGACTGCTGTGACTGCCGGTGTTCT
AATGTCTGTGTCCCGCGACAGCTGTATGTTGCCTCTGCTGCGGACGCAGC
CAGCCCACACTCGCTACTTTCAAAGAGTCGCTCCTAAGATGCTATGTTTT
GCACGGCTGGCACGCTTCCACCACATGAACCAGCGACGAAGGTGTTGGCA
CAGCGACTGCAGGGTTGTAGGGAGCCCTTTTTGAGCTCGCTGCCTTCAGA
AATCACGGCGCAGTGATCGGCGTTATAAACTGAAAGTGGTGTACCGTCAT
CTTCTCTAATACTCCGAGTAGAACACTGTTGCGGAGAGGCCGGGGTGATT
TGGCCAATCACGTAATGTGCCGACATGGGCTCGCCTGGCAGATCAAATAT
TCTTTCCAAATATCCTTTCTTGCCGGGATTTTCCGGAATTTGAGAAAATA
AATCCTTTCTGTTGCAGTCACGGAGCCTCTCAGGGAAACCTCGGGGGAAC
CAAGAAAGAATATTTGAGATAATAAGTCCTTTTGCGCAAACTCTCTACTA
CGAGCATATATATTTTTGCTTCACACTTGCAACTTGTTAGTGATAGGGGC
TAATCCTATACACCAGATAGTCAGCTGACTATCTATGTGGTGTGTAGGAT
TAGCCTCTTATCATATATAAACGGCATTTTTGAGCCTGACTTGAGATCTT
GGACCGAAGATTTCCCCGTTTTTTAGATGAGGTAAATTAAAGAAACAACA
ACGACAACGAACAAAAAACGTGCCGAAGGTGGCTGTGGCAGCATCAAAGT
CCATCAATACTTTGGACTCTTTGCGGCACTTCAATCTATCGCTTCCATTT
TTGGGTGCTGCGTACTCGCTGTTGTCGTCCTTGTCGCTGTCATTGTCGTC
CCTTCAAAAGGCTCAAAACTCAAGGCGTTGTCACTCAGAGGAAACGGACT
AGGGGACGCCGATGCGGTTGACCTCGCCGAGGCTATCGAAGAAAACACCG
TCCTGTGCTCCCTTAACCTTTTCGACAACAAAATCACGGACGTCGGGTAA
GCGAAGGGGGCGAGCGAGTGCGCAGAATATTCACAACACTCAAGCACAAC
GAACACCAAATAAGCAGCCGTACAAAGCAATTAATGAAACAGTTTTGGTT
TTGGTTTTGGTTTTGGTTTTGCCGGAGGGAGTGGGGAGAGGTGCGTCTCA
CGTAGGTTCTGCGCTTACGGCACTCGCATGACAAATCTGGTAGGATCAAG
TCAGGTCGACACGGCTAATCGATAATGGGGCTAAGCTCTAGCTAGGGGTT
GTATGGAGATGTTCTCGGCCACACGGGCCGAGGTAGGAAACGTTCGCTGT
ATTATTGACCTTGGAGGAAACAAACACCGGACAAGATGAAGAGTATCAAA
GCAGAAACCAAACGCAGAGTGACGTGGATGCGGTACACCCATCACGGAAT
CACTCCGTCACCAAATCCAATGAACCGAACCTCCCATCATGCCAAGATAC
TCCGGGGAAACTATCCAGAATCTTCCCCGAATGTCGCAACCTACCTACTG
CAATCTACGTAGTAGATAGATATCCAGTATCCATCCATCATATCAAACCA
TGCTACGAGGACACCCAATATTTCTTTCAACGGCGTCTACATTCCGCCGA
TACAAACCGAAAAGTCCTCTGCGTCTTCCCCTTCCTGGACGAACTTTGAA
AGCTCGACTTCTTTTTAATGAAGAGAATACCAGTATTAAACAACACATGT
TGGACAGACAGACCTCGAAAAGGTTTTTCCAATGCCAATGCCTCTTTACA
CTTTCGGCGCTGCGCATTTCTTGCCGTGAAGTAATCGAGCTATGGATTTC
CGTCAGGGGGGGAGAATAAAACAGAGGATACTACGGTATCCCTTGAAAAC
TCTGTTGCTTGCTGCGTTCGGTATCACTCTACACATACACTCACACGCAC
GTACGCTTTATCAGTATCACATGCATGTCTCGTGCGTATGTATCTGACAA
TCAAATAACCCCCCGCAGCGCCACCACGTTGGCGAAAACCCTGAGGCTCA
ACACAGTTCTGCGCGGGCTGTCCCTGTCGAGAAATTCCTTAACCTCCGCG
TCGGCCGAAGCATTCGGGCTACTGCTCGCGGGGGGTTACGAGATCTCAGC
CGTAGAGCAGGAAAAACGGGCGTTGGTAGAAGCAAAGATAGTGGCGCAGA
ACAAGATAGCCCAAGACGCCATGAAAAAGAAAAAGGACGCCAGGGTGGAG
ACGCGCCTTCCCCTGAGTACTGTCGTCGTCCAGACCGCAGGAGACGGAAT
CAATAGGGCTGTTGCCGGAGGCAGCCGGAGCTTGGCGACGCTAAACTTGG
GGGAGAACAGGGAGCTCGGCGCGGGCGGTGCTCTCTTAGGGCTCCTAGCG
AGGATTGTTGAAGCCAGGAAGGAAGAGGTGGACAAGGCTGCTAGCGGAGC
AGCAGGCGTTGTTGGATCCGGGGCTGGAGCGGTCGTGCTGCAAGAGTTAC
ATCTGGCTCGCTGTCAGGAGTACGCCGAGCAAGAGGTAGGAGGCGGGGAG
CACGCGGCGGCGGCGGCGGGGGGAGACCAAGCTGGAATGTTCGCTGCGAT
GTCATTGGCGCTGAGGCCGACAAAAGTTGTTTTATGAAGTCAAGGATCGT
CGTTGGCGTGATGTGTTGTTTTATTGGCGTTGAGCTGCATTGAATTACTG
CACTTGCTTCTCTATATAAAGCAGATTGGGTTTGTGTCGGTTGATTCATT
GTTGTTTGATTCGCCGTACTAGAGGCTGTCATGTTGTGGTGGAACTCCGC
AGCTTTTGCAGTGGAGGGAAACAGGTGAGAGCAGGCGACCGTACTTCGCT
TGTTCAGGATGTACGGCGGAACTTTCTCCATTCGTGGTAATAAATGCCGT
ACGTGGCGTATTACATCTCATACGAGTTGATAAGTGTGAGCCCTGGTACC
GTTTTGAAAGTTCCCTCTCCACAGCAGTGCCTCGGTAGGCTAAAAAAACG
AATGCAACTACGACCCCAACATCTATATAGTCAATTATAATACCTTCGGC
GTAGTCAGTGAGGGAACACCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1214787..1219909-

>mRNA_P-littoralis_Contig1.262.1 ID=mRNA_P-littoralis_Contig1.262.1|Name=mRNA_P-littoralis_Contig1.262.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1374bp|location=Sequence derived from alignment at P-littoralis_Contig1:1214787..1219909- (Pylaiella littoralis U1_48)
ATGGCGGAGGTGGATGTATTGCTCTGTCCCAGTACAAAGGTGGCTCACAG
TGATCCCTGGCGAGCCGACAAAATGGACATCGCAGCCGCGGGAATGGATT
GGGGTGCAAAGGATGTTCAAAAGTCTGCAGGAAACTTCGACGCCGACTAC
GAAGCTTTATGTCGGTTGTTCGAGGTCCCAGCGCATCCGTGTCTTGGGTC
ACGCCGGCCGAAAGAAGCTACCGAAGGCGCTCTTGATGCCAAACTCGAGA
AGCCCACTTCAGCCTCAAAACCATCCACCATTCAACTCCGGAACTATACC
GTGGATCTCACGACCCTCCACCTCATGATGAAGGCGCTAAAAACATCGTC
CGACGTCGACACGGTCATCTTCCACAACGCGGGGCTGACAGAAGCGTCCG
TAGCTGTCCTCGTGGGAGGTCTCCAGCTCACGAGTGTCCGCAGCCTCGGC
CTGGACTATAACCTCCCGTCGTCACCATCGCTCGTTAGGCCATCAGCATC
AGAAAGACGTCTCAAAGCAGCAATGCGAGCGGCAGAAGCAAGGGGTAACA
CGATGGAAAATGAAGTTGCATCTACCACTCCGTCTTCTCGTCCAGATTTT
GCCGGACTCGTCAGAGAAGGCTCAAAACTCAAGGCGTTGTCACTCAGAGG
AAACGGACTAGGGGACGCCGATGCGGTTGACCTCGCCGAGGCTATCGAAG
AAAACACCGTCCTGTGCTCCCTTAACCTTTTCGACAACAAAATCACGGAC
GTCGGCGCCACCACGTTGGCGAAAACCCTGAGGCTCAACACAGTTCTGCG
CGGGCTGTCCCTGTCGAGAAATTCCTTAACCTCCGCGTCGGCCGAAGCAT
TCGGGCTACTGCTCGCGGGGGGTTACGAGATCTCAGCCGTAGAGCAGGAA
AAACGGGCGTTGGTAGAAGCAAAGATAGTGGCGCAGAACAAGATAGCCCA
AGACGCCATGAAAAAGAAAAAGGACGCCAGGGTGGAGACGCGCCTTCCCC
TGAGTACTGTCGTCGTCCAGACCGCAGGAGACGGAATCAATAGGGCTGTT
GCCGGAGGCAGCCGGAGCTTGGCGACGCTAAACTTGGGGGAGAACAGGGA
GCTCGGCGCGGGCGGTGCTCTCTTAGGGCTCCTAGCGAGGATTGTTGAAG
CCAGGAAGGAAGAGGTGGACAAGGCTGCTAGCGGAGCAGCAGGCGTTGTT
GGATCCGGGGCTGGAGCGGTCGTGCTGCAAGAGTTACATCTGGCTCGCTG
TCAGGAGTACGCCGAGCAAGAGGTAGGAGGCGGGGAGCACGCGGCGGCGG
CGGCGGGGGGAGACCAAGCTGGAATGTTCGCTGCGATGTCATTGGCGCTG
AGGCCGACAAAAGTTGTTTTATGA
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