mRNA_P-littoralis_Contig1050.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1050.7.1
Unique NamemRNA_P-littoralis_Contig1050.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI)

HSP 1 Score: 123 bits (308), Expect = 1.580e-32
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKMIQR+PFHLVDP PWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTIL+VMFT
Sbjct:    5 AKMIQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A173N127_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Papenfussiella densa TaxID=1758035 RepID=A0A173N127_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.700e-32
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKM+QR+PFHLVDP PWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLG  TIL+VMFT
Sbjct:    5 AKMVQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGVLTILYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A2Z5XCF9_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=93 Tax=Ectocarpales TaxID=2877 RepID=A0A2Z5XCF9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.750e-31
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKM+QR+PFHLVDP PWPLV+ALGGLSLTFGGVLFMHNYEGGGELLCLG FTIL+VMFT
Sbjct:    5 AKMVQRHPFHLVDPSPWPLVSALGGLSLTFGGVLFMHNYEGGGELLCLGVFTILYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: G9M4V9_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=G9M4V9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.340e-30
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKM+QR+PFHLVDP PWPLVAA GGLSLTFGGVLFMHNYEGGGELLCLG  TIL+VMFT
Sbjct:   14 AKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYEGGGELLCLGVLTILYVMFT 72
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.090e-29
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKM+QR+PFHLVDP PWPLVAA GGLSLTFGGVLFMHNY GGGELLCLG FTIL+VMFT
Sbjct:    5 AKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A2Z5XCG3_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCG3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.130e-29
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 KMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            KMIQR+PFHLVDP PWPLVAALGGLSLTFGGVLFMHNY+GGGELLCLG  T+L+VMFT
Sbjct:    6 KMIQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGLLTVLYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A499U4C2_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Myriogloea sp. NZ TaxID=2185083 RepID=A0A499U4C2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.480e-29
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKMIQR+PFHLVDP PWPLVAALGGLSLTFGGVLFMHNYEGG ELLCLG  T+L+VMFT
Sbjct:    5 AKMIQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYEGGKELLCLGVLTVLYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A3Q9Y3F9_SCYLO (Cytochrome c oxidase subunit 3 (Fragment) n=88 Tax=Ectocarpales TaxID=2877 RepID=A0A3Q9Y3F9_SCYLO)

HSP 1 Score: 114 bits (285), Expect = 2.350e-29
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    4 KMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            KM+QR+PFHLVDP PWPLVAA GGLSLTFGGVLFMHNYEGGGELLCLG  TIL+VMFT
Sbjct:    6 KMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYEGGGELLCLGVVTILYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A5K7TM11_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax=Chorda TaxID=45033 RepID=A0A5K7TM11_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.920e-29
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            A M+QR+PFHLVDP PWPLVA+LGGLSLTFGGVLFMHNY+GGGELLCLG  TIL+VMFT
Sbjct:    5 ANMVQRHPFHLVDPSPWPLVASLGGLSLTFGGVLFMHNYKGGGELLCLGVITILYVMFT 63
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BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Match: A0A0A7LG50_SACLA (Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina latissima TaxID=309358 RepID=A0A0A7LG50_SACLA)

HSP 1 Score: 112 bits (281), Expect = 1.690e-28
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 AKMIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILHVMFT 177
            AKM+QR+PFHL  P PWPLVAALGGLSLTFGGVLFMHNY+GGGELLCLG FTIL+VMFT
Sbjct:    5 AKMVQRHPFHLGAPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGVFTILYVMFT 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1050.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
COX3_PYLLI1.580e-3294.92Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyc... [more]
A0A173N127_9PHAE9.700e-3289.83Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
A0A2Z5XCF9_9PHAE3.750e-3189.83Cytochrome c oxidase subunit 3 (Fragment) n=93 Tax... [more]
G9M4V9_9PHAE1.340e-3088.14Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=... [more]
E6ZES3_ECTSI1.090e-2988.14Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc... [more]
A0A2Z5XCG3_9PHAE1.130e-2987.93Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=... [more]
A0A499U4C2_9PHAE1.480e-2988.14Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
A0A3Q9Y3F9_SCYLO2.350e-2987.93Cytochrome c oxidase subunit 3 (Fragment) n=88 Tax... [more]
A0A5K7TM11_9PHAE6.920e-2984.75Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax... [more]
A0A0A7LG50_SACLA1.690e-2886.44Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1050contigP-littoralis_Contig1050:70509..70810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.Q0P3F8
PFAMsCOX3
Model size302
Max annot lvl3041|Chlorophyta
KEGG koko:K02262
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.02e-15
EggNOG OGsCOG1845@1|root,KOG4664@2759|Eukaryota,37QER@33090|Viridiplantae,34MM4@3041|Chlorophyta
DescriptionSubunits I, II and III form the functional core of the enzyme complex
Cds size192
COG categoryC
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789387.3399608-UTR-P-littoralis_Contig1050:70508..705141680789387.3399608-UTR-P-littoralis_Contig1050:70508..70514Pylaiella littoralis U1_48UTRP-littoralis_Contig1050 70509..70514 +
1680789387.3640344-UTR-P-littoralis_Contig1050:70706..708101680789387.3640344-UTR-P-littoralis_Contig1050:70706..70810Pylaiella littoralis U1_48UTRP-littoralis_Contig1050 70707..70810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789387.3550975-CDS-P-littoralis_Contig1050:70514..707061680789387.3550975-CDS-P-littoralis_Contig1050:70514..70706Pylaiella littoralis U1_48CDSP-littoralis_Contig1050 70515..70706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1050.7.1prot_P-littoralis_Contig1050.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1050 70515..70706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1050.7.1

>prot_P-littoralis_Contig1050.7.1 ID=prot_P-littoralis_Contig1050.7.1|Name=mRNA_P-littoralis_Contig1050.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
MIQRYPFHLVDPRPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFT
ILHVMFTLLGGEM*
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mRNA from alignment at P-littoralis_Contig1050:70509..70810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1050.7.1 ID=mRNA_P-littoralis_Contig1050.7.1|Name=mRNA_P-littoralis_Contig1050.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=302bp|location=Sequence derived from alignment at P-littoralis_Contig1050:70509..70810+ (Pylaiella littoralis U1_48)
GCTAAAATGATTCAACGATATCCATTTCATTTAGTCGATCCAAGACCTTG
GCCTTTAGTTGCGGCGTTAGGAGGCTTGAGTTTAACTTTTGGTGGAGTGT
TATTTATGCATAACTACGAGGGTGGGGGAGAATTACTTTGTTTAGGTTTT
TTTACGATTTTACACGTAATGTTTACTTTGCTTGGTGGAGAGATGTAATT
CGGGAAGCTTTATTTGAGGGTCAGCACACTACTGCGGTACAACAGGGCTT
GCGAATGGAGATGATTATTTTTATTGTTTCAGAAATAATGTTTTTTTTTG
CA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1050:70509..70810+

>mRNA_P-littoralis_Contig1050.7.1 ID=mRNA_P-littoralis_Contig1050.7.1|Name=mRNA_P-littoralis_Contig1050.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig1050:70509..70810+ (Pylaiella littoralis U1_48)
ATGATTCAACGATATCCATTTCATTTAGTCGATCCAAGACCTTGGCCTTT
AGTTGCGGCGTTAGGAGGCTTGAGTTTAACTTTTGGTGGAGTGTTATTTA
TGCATAACTACGAGGGTGGGGGAGAATTACTTTGTTTAGGTTTTTTTACG
ATTTTACACGTAATGTTTACTTTGCTTGGTGGAGAGATGTAA
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