mRNA_P-littoralis_Contig105.125.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig105.125.1
Unique NamemRNA_P-littoralis_Contig105.125.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Match: A0A6H5JDE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE5_9PHAE)

HSP 1 Score: 506 bits (1304), Expect = 4.710e-177
Identity = 271/391 (69.31%), Postives = 311/391 (79.54%), Query Frame = 1 
Query:    1 MGSASSTDMIRRCVGPEVAPPIVKSLAGASQHIFE---------------------------------------------------MLAVLVLYGKIPARFKVRNLFELFDLDFDGKLNAAETILMLRSVLSGIAKSTGGTQPPSISAVEAIWQHIVRLGYTDEEERLSYTKWVSFCSKTREVHALGKSLDFNKGVCRKSLTSGARAILSAMAIGEDEALLAAQRAALTKKPQERASAAMEKKRVTAA-REGKNKYARSSVLKIKEVFDSLDKDGSGYVDENEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLNEVHPFAGDADLAKMLEWISEEPTQQGAARLANRELAVADHVEIAALFNIYDAEGSGEMTLSELASAMGEVVGL 1017
            MG+ SST+MIRRCVG E+APP+VKSLAGA+QH+FE                                                   MLAVL +YGKIPAR KV+NLF+LFDLD DGKLN++E I+MLRS+L GIAKSTGG  P +IS +EAIWQHIVRLGYTDEEERL + +W++FCSKTREVHALGKSLDF+KGVCRKSLTSG RA LSAM +GED+A++AAQRAALTKKPQERAS A+EKKR  AA REG+N++ARSS++KIKEVFDS+DKDGSGYVDE EWRRLTEDTPLAASDDTFLFIEREREGKISIVEVL E+HPFAGDADLAKMLEWISEE TQQGAAR  NRELAVA+ +E+A LF+IYD EG+GEM LSELA+AMG++VGL
Sbjct:    1 MGNGSSTEMIRRCVGLEIAPPVVKSLAGATQHVFEAVEARTKAMDLPPGLDAVHVAQALGEGRGSQADLVVAIMETKGNGRIDVYEMLAVLTMYGKIPARLKVKNLFDLFDLDVDGKLNSSEAIVMLRSLLHGIAKSTGGVLP-NISDIEAIWQHIVRLGYTDEEERLPFARWITFCSKTREVHALGKSLDFSKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSVDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCELHPFAGDADLAKMLEWISEETTQQGAARKVNRELAVAERLEMAELFSIYDTEGNGEMPLSELATAMGDIVGL 390
[Close]
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Match: D7G6E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E8_ECTSI)

HSP 1 Score: 491 bits (1263), Expect = 1.080e-172
Identity = 251/316 (79.43%), Postives = 288/316 (91.14%), Query Frame = 1 
Query:    1 MGSASSTDMIRRCVGPEVAPPIVKSLAGASQHIFEMLAVLVLYGKIPARFKVRNLFELFDLDFDGKLNAAETILMLRSVLSGIAKSTGGTQPPSISAVEAIWQHIVRLGYTDEEERLSYTKWVSFCSKTREVHALGKSLDFNKGVCRKSLTSGARAILSAMAIGEDEALLAAQRAALTKKPQERASAAMEKKRVTAA-REGKNKYARSSVLKIKEVFDSLDKDGSGYVDENEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLNEVHPFAGDADLAKMLEWISEEPTQQGAARLANRELAVADHVEIAALFNI 945
            MG+ASST+MIRRCVG E+APP+VKSLAGA+QH+FEMLAVL +YGKIPAR KV+NLF+LFDLD DGKLN++ETI+MLRS+L GIAKSTGG  P +IS ++AIWQHIVRLGYTDEE  L + +W++FCSKTREVHALGKSLDFNKGVCRKSLTSG RA LSAM +GED+A++AAQRAALTKKPQERAS A+EKKR  AA REG+N++ARSS++KIKEVFDS+DKDGSGYVDE EWRRLTEDTPLAASDDTFLFIEREREGKISIVEVL EVHPFAGDADLAKMLEWISEE  QQGAAR+ N ELAVA+ +E+A LF++
Sbjct:    1 MGNASSTEMIRRCVGLEIAPPVVKSLAGATQHVFEMLAVLTMYGKIPARLKVKNLFDLFDLDLDGKLNSSETIVMLRSLLHGIAKSTGGVLP-NISDIQAIWQHIVRLGYTDEEGLLPFARWITFCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVNPELAVAERLEMAELFSM 315
[Close]
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Match: A0A835ZE04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE04_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.010e-16
Identity = 77/272 (28.31%), Postives = 121/272 (44.49%), Query Frame = 1 
Query:   64 IVKSLAGASQH----IFEMLAVLVLYGKIPARFKVRNLFELFDLDFDGKLNAAETILMLRSVLSGIAKSTGGTQPPSISAVEAIWQHIVRLGYTDEEERLSYTKWVSFCSKTREVHALGKSLDFNKGVCRKSLT---SGARAILSAMAIGEDEALLAAQRAALTKKPQERASAAMEKKRVTAAREGKNKYARSSVLKIKEVFDSLDKDGSGYVDENEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLNEVHPFAGDADLAKMLEWISE 858
            +++ L+G  QH    +FE+L+      K+P+  ++R LF++ D+D DG L   E +L++RS L  +AK T G  P     V  I + I +         +   +W+SFC     V A    +  N  +CRK  +    G              + L A        P   A +  ++ R       K  +   +VLK+  VF + DK GSG +  + W RL        S             ++SIV+VL   +PFA DA++A+ML WIS+
Sbjct:   69 VLRCLSGPKQHGLVDVFEVLSAACFLTKMPSAHRLRELFDIHDVDGDGVLGFCECLLLVRSSLHVLAKLTQGKAPEPDQLV-TITEAIFKANTQPAAAAIGMEEWLSFCRGDAAVRAAAARV--NSILCRKMASVFKPGGXXXXXXXXXXXXXSELKAASLVRIASPVRPAPSVHKRPRPQL----KMGHGSDAVLKLHAVFAAADKSGSGVIAADTWHRLMGHAAGTLS---------AYGPQLSIVDVLQAAYPFAADAEMAQMLTWISD 324
[Close]
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Match: R1F2R1_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F2R1_EMIHU)

HSP 1 Score: 69.3 bits (168), Expect = 6.090e-10
Identity = 49/156 (31.41%), Postives = 77/156 (49.36%), Query Frame = 1 
Query:  604 NKYARSSVLKIKEVFDSLDKDGSGYVDENEWRRLT----EDTPLAAS--------------------DDTFLFIEREREGKISIVEVLNEVHPFAGDADLAKMLEWISEEPTQQGAARLANRELAVADHVEIAALFNIYDAEGSGEMTLSELASAM 999
            +KY++ SVL +KEVFD  D DG G +  NE R+      ED   AA                     +  F  ++R+ +G+IS  E+L  + P A   ++  ML W+ + P       L   E  ++   E+ A+F+I+D +GSG +TL EL +A+
Sbjct:   55 SKYSKKSVLLLKEVFDEYDGDGFGTISLNEMRQSLIQKKEDKARAALQSKDLAVRQAAAGIDIADVVEPLFRTLDRDGDGEISFPELLAVLFPLATHTEMETMLSWVKKGPQGPNELPLTMSEEQLS---ELRAIFDIFDTDGSGALTLPELQAAL 207
[Close]
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Match: A0A7S0S914_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S914_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 5.550e-8
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:  607 KYARSSVLKIKEVFDSLDKDGSGYVDENEWRRLTEDTPLAASD-DTFLFIEREREGKISIVEVLNEVHPFAGDADLAKMLEW---ISEEPTQQGAARLANRELAVADHVEIAALFNIYDAEGSGEMTLSELASAM 999
            KY +  VLK+KEVFD  DKDGSG ++ NE +   + T L     + F  ++R+   KI   E L   + +A   ++ +M+ W   I EE       ++  + L+     EI ++F +YD   +G +   EL  A+
Sbjct:   12 KYNKREVLKLKEVFDDADKDGSGEIEANELQHSLKKTNLGEEAVNMFKSMDRDGSKKIDFSEYLRVYYRYAATEEIKEMMLWAYPIKEE------RKVEVKTLSEEQKAEIKSIFVLYDTNNNGTLEKKELIDAL 140
[Close]
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Match: D8LE31_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE31_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.290e-5
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = 1 
Query:   49 EVAPPIVKSLAGASQHIF---EMLAVLVLYGKIPARFKVRNLFELFDLDFDGKLNAAETILMLRSVLSGIAKSTGGTQPPSISAVEAIWQHIVRLGYTDEEER-LSYTKWVSFCSKTREV 396
            EVA  +  +      H+    E LA L +   +    K+R +F ++D D  G L+  ETIL LRS +SG+ K  G   PP  S +E I     +     E+E  +    +  FC KT EV
Sbjct:   19 EVADAVFSTFDDDKNHLIDALECLASLAIMSGMTIEQKIRYIFGIYDFDESGVLSVDETILALRSTISGLCKLCG-LDPPLESEIEVIALMAFQQSAGQEDEAAIDAVTFTVFCQKTPEV 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig105.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JDE5_9PHAE4.710e-17769.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6E8_ECTSI1.080e-17279.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZE04_9STRA5.010e-1628.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R1F2R1_EMIHU6.090e-1031.41Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A7S0S914_9CHLO5.550e-831.11Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
D8LE31_ECTSI1.290e-532.50EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig105contigP-littoralis_Contig105:543768..554332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD33190
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8
Model size1018
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons8
Evalue9.98e-11
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-10_001590.1
DescriptionCalcium-binding protein
Cds size1017
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig105.125.1prot_P-littoralis_Contig105.125.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig105 543768..554332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789386.8888888-CDS-P-littoralis_Contig105:543767..5438721680789386.8888888-CDS-P-littoralis_Contig105:543767..543872Pylaiella littoralis U1_48CDSP-littoralis_Contig105 543768..543872 +
1680789386.9008493-CDS-P-littoralis_Contig105:544929..5450541680789386.9008493-CDS-P-littoralis_Contig105:544929..545054Pylaiella littoralis U1_48CDSP-littoralis_Contig105 544930..545054 +
1680789386.9121082-CDS-P-littoralis_Contig105:545377..5454951680789386.9121082-CDS-P-littoralis_Contig105:545377..545495Pylaiella littoralis U1_48CDSP-littoralis_Contig105 545378..545495 +
1680789386.924636-CDS-P-littoralis_Contig105:552021..5521371680789386.924636-CDS-P-littoralis_Contig105:552021..552137Pylaiella littoralis U1_48CDSP-littoralis_Contig105 552022..552137 +
1680789386.9328825-CDS-P-littoralis_Contig105:552659..5528371680789386.9328825-CDS-P-littoralis_Contig105:552659..552837Pylaiella littoralis U1_48CDSP-littoralis_Contig105 552660..552837 +
1680789386.9412396-CDS-P-littoralis_Contig105:553228..5533451680789386.9412396-CDS-P-littoralis_Contig105:553228..553345Pylaiella littoralis U1_48CDSP-littoralis_Contig105 553229..553345 +
1680789386.9536524-CDS-P-littoralis_Contig105:553659..5538441680789386.9536524-CDS-P-littoralis_Contig105:553659..553844Pylaiella littoralis U1_48CDSP-littoralis_Contig105 553660..553844 +
1680789386.96379-CDS-P-littoralis_Contig105:554259..5543321680789386.96379-CDS-P-littoralis_Contig105:554259..554332Pylaiella littoralis U1_48CDSP-littoralis_Contig105 554260..554332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig105.125.1

>prot_P-littoralis_Contig105.125.1 ID=prot_P-littoralis_Contig105.125.1|Name=mRNA_P-littoralis_Contig105.125.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=339bp
MGSASSTDMIRRCVGPEVAPPIVKSLAGASQHIFEMLAVLVLYGKIPARF
KVRNLFELFDLDFDGKLNAAETILMLRSVLSGIAKSTGGTQPPSISAVEA
IWQHIVRLGYTDEEERLSYTKWVSFCSKTREVHALGKSLDFNKGVCRKSL
TSGARAILSAMAIGEDEALLAAQRAALTKKPQERASAAMEKKRVTAAREG
KNKYARSSVLKIKEVFDSLDKDGSGYVDENEWRRLTEDTPLAASDDTFLF
IEREREGKISIVEVLNEVHPFAGDADLAKMLEWISEEPTQQGAARLANRE
LAVADHVEIAALFNIYDAEGSGEMTLSELASAMGEVVGL
back to top

mRNA from alignment at P-littoralis_Contig105:543768..554332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig105.125.1 ID=mRNA_P-littoralis_Contig105.125.1|Name=mRNA_P-littoralis_Contig105.125.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10565bp|location=Sequence derived from alignment at P-littoralis_Contig105:543768..554332+ (Pylaiella littoralis U1_48)
ATGGGTAGTGCCAGCAGCACAGATATGATACGACGCTGTGTGGGGCCAGA
AGTCGCTCCACCAATAGTTAAATCGCTGGCCGGCGCATCGCAGCACATTT
TTGAGGTGCGTGTATGACTGATTGATGTGGTCGTGCAGCTGTTCAACCTG
CCTGCAACGCACACACCTCATCGTAGTGCACCAATCCTGGTTTCCCACAA
TGTATGTAGCTAACAAGCACTTTCGAAGTACTAGCATTATAAAGTGCTCT
CGCCGGATTCGGCAAAAATAGGAGGCCCCTTTACCTTTCTTTGCACCGGC
AGGCTGTAGTGTCGAGGATCAAGGCAATGGCCGATCCTCCTGGGTTAGAT
AGAGAACACGTGGCTCAGGCACTGGGAGAAGCGCGTGGTCAGCAAGCCAC
TCTCTTGATAGCCGCTATGGCAACCAACGGAACCGGCCGCGTCGACTTCT
ACGAGGTCAGGCATACAGCACAAAGTTTTGTACCAGTATAATGCACTGTA
GTTGTTGAACATGCTTTCTTCCATACAGCACATGTGATACATTCTGTTGA
TCAACCGTTCGTTGTCCTCAGTGTGAATGCATCATACCTACCTGTCCAAT
GCGACCTTGACTTTTCTTGTTGAACGCGATTCATACGAGGCATCAGCAGA
TTGGTTATGCTCCCCAGGGCCAACCTTCGCTGCTGTGATGGTTGCCTTCG
AGTTTAAATTTTTCCAGAAATGTATACTGGACGAATAGTCTCGACGACGC
AGAAACTGTTGTACACTGCTGTAGTACAGTACGTAAGATTGTAAATTGGA
ATGCGTACGTATTACTTTAACGTACGCTAAGGCGCGCCCTCTCCGGCAGC
ATTCTCCACTTGAATATTCAAACGACTCATTGAGTGGGTTTAAATGTCGG
TACGACGGTCACCGTCATACACCTAGTTTCCGTCTATAAAAATAAGTGTT
GCTCAGTCGTCTTCTGTCCTCTACCATGAGTGCGAACTCTGGTGAACAAA
ACGGCCGCATGTTTAAAGACGCTCAACCTCAAGCAAGGCTTCATTGCGGC
TACCGTAGAGCAAGTTGGATAGATATTTATAGGTACCGTGAATACAGTAT
TCGACCAATCGTACCTTCTTTGTGACACAATCCTACACGTTTACTGTCAC
GGCTTCTTACAGATGCTGGCGGTGCTGGTATTGTACGGCAAAATCCCCGC
TAGATTCAAAGTGCGAAATCTTTTCGAACTCTTCGACCTGGACTTCGACG
GCAAGCTTAATGCTGCCGAGACTATTCTCATGCTCAGGTTTGTTTGGAGC
AAAAAATCCATTTTTAAAATCGCCCGTAGTTTGAATTGAACACCTGCATT
TTCGGAGTGGTGGCGTTATTTTCTTTTAGTTTTTCGAAATGCACTGCCAA
AGAGAATATTAATGCTTCCTCACACGCAGGCAACAGCTTGAATCACACCA
GAAAATGCACGAGTTGCCCCAAACAGTCCAACATTTGTTCATGCTTTTGT
ACGACTCCTAAGTACGATGACATCTACTGGAACCGTGTCAGCCCTCTGAG
TATTGTCCTCTTCGAATTTCAGTCAAAGATTTGCACTACATATATTTTCG
CCTCCTGCAGGTCAGTTTTATCGGGCATAGCAAAGTCAACGGGTGGCACT
CAGCCGCCAAGTATTTCTGCCGTAGAGGCAATTTGGCAGCACATCGTCCG
ACTTGGCTACACGGACGAAGAGGAGCGGGTGAGTTTTGAGGATTTTAGTC
AACGGTAGCCATTTGAGTAAAGGGTCTACGGAAAACTGGAGGCTCCGTGG
TATGATGCACCTGATGAGTTTTACGATACCCGAAATATATTTGGTTCCGT
TTACCACTCTTCTACTTAATAAATGGACTTTTGTGTGTGATCACTCAAAC
CTACCATCAGCCCCCTGTGATGATGGAGTCTTGATGAATGTAGATCATTT
TCCTGTTAAGATAAGACAATCCAGAATGGTGTGTTGATAAGGATAATCTA
TGAAGGATTTCGCTATTGATTTTTCTCTCGAAGCGGGGACGACTATGTGC
ACCGACACGACGAGTCGCGATAAGGGCTCGGTGCAGGGTTCGCTAGCTTT
CTAAGGGCACAAGTGGCATTGCTGTGACGCGATAGCCAGCCGTTCGAGCA
GAGAAGCAGGTGCGATGCGAAGGGGTTGCACGACAGGGCGACGACGAGTT
TAGCTATTTGTCCAACCTCATGTCAAGCGGAGGTCTCGCGGCGCCCGAGT
ACGGGCGTCCCTCTACGTAAAGTGATCCGCCGCGTTTTTACAAGGTCTAC
GTACACTACGAGAGGAACGTTTAGCTCAGCAACGGTGGGAAGTCAATAAC
GCGCCCGGCGCTGTCTGTGTCCCAACTGCTCCGCAAAAGGGTTCGGTCAT
ACTTGTCGATACGTGCCGTTGGCGAGAGTGGACATGAGGAAGACGACTCG
AGAACGGCGCCTGCCAAACACGCGGAATATTGGCAAGGGCGCCCTCGATC
CCGCCTCTGCTGCCGCTGCCGTGACGCGCATCTTGGCTGTGGATTCGGAA
CCCAATGCGATTGACCACGTGCATGTTATCCTCTGCAACCTCGAATCATT
CTTCGAAATACGTGCCGCTGCGGTCTTCCACAAACCAATGACTCATTTTC
AAAGTGGCCGGTCTCGAGCCTTGCGCGTTCAAGATCAACGTTGACGACAT
CATTGGTCTCAACGGGGATTGGAAGCGCCACCCTGACAAGGTGTTCGGAC
TGGTGCGGACGGCTGCGGTGGTAGAATGGAGGACCGTTCCATTCGCGGAC
AAACACGACAGTAATTTCGTGGGAAAGCTCCTGCCGGTAAGGCTCCCCCC
GCGTTCATCTCAGCAACAGCGCTAACAGCAGCGGCAATCCGGTGGTTACT
TACGTGCTGGACGAGCGGTATTGACGGGCTTTAGTCGCCTGAGTACGCGT
CCACCACTCAGAAAGAGGGGTTGAATATTCACTCGTTGTCCCAGCAGGCA
CACAAGAGAACGCCGGCTCGTTCAACGGGGAAGCAGCAGACTAAGGGCGC
CACCCATGCGAAAGGACGTTTGCAGCAGCGTTCCCACTCGCCGACGATTG
CAACCAGTTCTGGTTCGTCCACTCCACGTGCTTCTGCAAGGGGACGCGCG
GTGTTTTAGGCTGCCGCGGGTGAGCCGAAGGATCACGACGGGTCTACTGT
GCTGCCGCCTGCACCTGCTCCTTGTGATGGGGCAGGGACTCCCACGCAAG
GGACGAGAAGCGTTGGGACTTTTGTGTCTGTCTAGAGGTACGAACGGGTT
TGTGACTGCGGGCCTTCACGTAAATGTTGACGAGCTGCGGTGCCTGGGGC
TTGTCACCCTGACGTTCTTGTGGCTAAGGCAGTCCTTGACGACAAAGGTG
AATGAGGGTCGACATCTGTCTCCGCTAGCGTCGCATCCAGGCTGCATGCT
AAGTATCCCGACGTGACGATCTTGACGAGTGCCGACGCTACCGAATAGGT
CAAGGTGACCGATGGCCGCGTCCTCCACGTCACTAGAAAACGTGCCCGAC
GCGAATATCGATCCACACGGCTTGGGGGCCGGTTGCCCTATGCCCGCGCT
CGTTTGCGATATTCCTGGTGATGATGACATCGAGCTAATTGCTAGTCCAG
CGAAGGTGATTGGTGTTGGCGCGTTCGAGAGTTTGGACGATCACGCCCGT
GCTGGTCGTGCGGCGAGCGTGACCGGTGCCAAGTCATGGACTGTTCGTTG
CCTCCGCGTTACCCCGAGCGTTGACGCCGTGCAGCTCCAGGATCAGGAAC
AGGGTCACGATGAAGCTGTTGAGTGCTTGACATCGCGGGGTCCTAACATG
ACCATATCTCCCGGAGAGGAGCAGGCAGGGCGAGCTAAAGCACTTGATGC
TGCCGTGAACTCTGCGGTGACGTCTGGTCTATTTCGTGATATGGTTGGTG
CTCTCCGCGGAATTTCGGCTCGTCGTTCGAGCGCTTTTCGGCGTGGTGAG
CGCGATATTCCGCCTGCTAAAGTTACACTATTGACAGCAATCATTAGACC
TAACGCTCAGAACGTTAAGGCACGCCCGAGGTCAAACAACCCACGAGAGA
TGGCATGGACTACCACTTGTATCGCTGCTTTCATATCCATGGGGCTGGTA
TTCCTCAACAAGGAAGCGGTTTGGGCAAGCCTAGCGCCGTTATGGTCACG
CCGAAGAAGGTTGGATGCCGGATGGTGGGCGACTACCGTAAGGAGAATAA
TATGGCCGAGAAAGTGCCAGATACTAAACCCAACCGAGAAGGCGAACTTG
AAGCTCGCGCTTTCTTTGGAAGACTAGATATGCTTCGGGGATACTGGCGG
ATGCCGCTTGCACGCGAGGTTCAAGAGATCCTCACCATCGCTACTCCGTG
GGATTTGTGTATCCCTACCCGAGTGCTGCAAGGTGTTTTGATGTAAAGTC
GTCTTTTCAGGATACAACTATGACTGAAGTACTAGATGGGCTCAGTCGTT
TGGTCCGGATGGATGATGCCATTCATTTGGGGCATGATGGAGCGGACCTG
CTGAACATACTGGACACGGTGCTGGAACGGCTGAAGGCCGGCTTGTAGGT
AGCGGCCCACAATTGTATTTGCTTTGATGCCTCAAGCAAATTGTGTGGCA
AGGTAAACTCGAGTGGCGTAGTGCTGGACGATCGACAGCGGTGCAGTGGT
TTGGCTCGCATGCGCACAGCTGCGGAGTTGAAATGCAGTTCCTACGAGCT
GTAAATTGGCCCCGGACTTCGGTGCCTCGAATGGCGGAGGCTGTTGCACC
ACAGTGGAATTTCCCGGAGTCTCAGATGTCGACAAATCCAAACAGGGCTA
GTCGCGTGCCTTCACGCAAGGCAACCCTTTAGCAAGGGTGGACGCCGGAG
CTAGTGATGACCTAGGATCACGCACAGGACATGGTGGCCAACGCGATGAC
TTTTTGTCATTCACGATAAGTATACGTCGTGCTCATGTTCCCGGATGCCT
TGAAAGCTTCATCACGCAGGTGGCGAAATTCAAGGTTGAGTGTGGCGTGG
AAATTGAATAAATGAGCCACGAACCGCCAGGATATTTCGGCGCTATTTTT
CGCGGATCCCAGTTGCGTTGGGCTACCGTGGATAAAAAACGCTTGGCCCT
TGTGGGTCCCTCTCGTCGACTGGAGTGCCTACCTGCTGCGGGGTGGTGTG
CAGATCTATGCTGATTATCGGACATTAGCGTACATTTTCGATCCATACGC
TTGAGTTTCGTCAGTCCCAAAAACTACTGCGCAACGTATGGAACACATAA
AAACGATTACTGGGTAGTATGACTACACGATCAAGGACGTCACAGGAAAA
CGTTTTTATTGGGGGGATTCCTGCCTAGACACCACCATGCCTTTAAAGGA
GACAGTTTTGAAACCTCGATAAACAGCACGTGCTACTCTAGGCACCTCAT
CTACTGCATCGGCGAACTCGTTCAAGGACACGACTGGTGTTGTCGTTAAA
GATACGCCGGGTTGTTCCGTGTCATAATCGATAGCCGGAGCTTTATGTGG
GTTCCTGAAAGGAAACGAGACTGATAGATTCGACTGGTGGTCTGTGCATG
CATGAAGGAGGCAGGTTATCGAGGTTCGGTGGCAACTTAACAGCGTTTGA
ACGAATATATATTGCTGTTGGCTTCGAATGGAGAAGTAAGTGATGGAGTT
CGTCAAGCAATGCACTGTACATTTTAGATGATAATTCTGGTGAGATGGTG
CCACGCTCGTTTGGATAAAAATAAATTCGCAAGAGACTGGGATAAGTGCT
GCATTTTGTCTACCTGTATATTGGTGGAAGTGGACCTCTAGACGCGGATG
GACTCAATAAATCGGATAGGTATGCGTATGTGCTCGTGATGACAGATGAT
TTACGTACCTTCGACTGGCTGGAACCAACTGAAACATGTACTGCGCGACA
GACGGCTCAACACCTGTTGACTTGGTGCAACAGGCTCGATGTTCCACAGG
TCTGGATCAGTAATACCATTTCGTATTTCAAATACAAGATCATGGCCACG
CTTGAGAACGCTACTTGGAGTTGACGGGAGATTTTCCATGGAAAGTTTCC
CTCGGTCAAACGGAACGTGTGAAGGCGTGATACGGGAAGTCGTGTGTACT
CTCAGGGCGATGCCAAAGGAAGGACGGATGAATGCCCGCAATCGGGTTGG
TCTTATACCGGCTGATCAATCGATGCTGAATACTGCTTATCGTAAGATGT
GCTGTATGCGTCTACTCAGCATCATGTCATGTTCGGGCGAGCTCGGCATA
CGAGTTTTCGTTCCTTGGCTTCGTCTTCAGGCGATGAGTGGAAGTTTGTA
CGTCCTCGATAAGAACGCTCTGAAGCGGCCAGTGCAACATATCGTGGCTT
CGCAGATCCATCTACAAAAGGACGTTCTAACCGCTACTTAAGGAGGAGCT
GAAGAACGTGGGACATGATCGGATCCGCCAGCACCCGTCTACCTGCCGCA
GCTCGTCGCTGGAGTTTTCGGTGGGGGACCATGAACTCGTAACACGTGTT
CGGGGTGGTAGTGCATCGACGCGAAAGCTCTTCACAACTTGGACTAGACC
GTAGCGTGTAGTCACGGCAGAAAAAGAAAATGTTTACATCGTCCAGAATA
ACATTCCAGGCGAAATTCGGGGCGTTTACGATTCTATGCTGATTCGGAGC
TGCAAATGACTTCGGAGCTGAAAGATGTTTTCCAGCACTCTTTCACGTAA
GAATATTTTGAGATATTGGTGTTCGTAGATACTGGTGAAGCTTCAAATGG
AACGGGTTGTTTTGTTGGAGCTCAATGAGTCGGCTGTGAGTAAGACGAGG
ATACCTGGAAACTGCTTTCAAGAATTCGGAAAGCTGCGCCGTAATTTGTC
AGGCGTGAGGAACGAAAGTGCATTTATCGCCTCAAGTTCGATCTCAACAA
GTACGACCTCAACTCTAAAAGGATAACAACATCAAACTGTACGGCTATTC
TCACAAGCCCATCCAAATTTGTTTGAGGCTGAGAAAAGTTTATTTGTATG
ATTGAATTGCATTTATTTCCGGCCTGATTTCATGTTGGTGTTCACCGCAT
TGGGTCTATCTCTCATAGTATTGATAAATTGTCCTGATCTTTGTGTTTTC
ATGCGTGAGTATTTTGGTGTGATGTTTGTCTTTTGGACTTGAAGAATATT
TGTCTAACACGTTTGTTTATGAGCGAGACGGCTGTAGGTATCACGGTTGG
GTTTACCCCTTGAGCTTGCCTTGAGGTGCTCGTGTCCTTTTAATTTATCG
TATGGTGCAGGAATGTCGTTGTATCACTTGGGAAATTGCACTGATTCATG
AACTGTCCAATGAAGTCGTATGACAAAATGATGTTGCATCTTGATGATAT
TATCCTTAGCACATATTTGTCTAATATGATGTGCTTTGGTTTGCACTTTG
ATGGCATTGTGGACTCTGATCAATGGTAGCTACTTGTTGTGTCGAAGGTC
CCGGAGGACCCGTGGCATGATGGACTTCCCGTGTTTGATGATATATACCG
GACCCGATATATTTGGCTCCGTTTGTGTTTGTTGCTCTCTTTCCTTGCAG
AAAAACGTCTGTGGGTGATCACTGGAGCCTACCATCAGCCCCTCAATGGG
GATAGAGTCCTGATGGATACATATCAATTGTCTGTCCTGACAGGACGGTC
CATAGCTTTCAAACACGACCGATGGGCGGCCCCTGGCCATGAGCCAGCGG
CTTCTTAACATTTATGATAAACGCGGACGAGGATTATTCGGGGCTTCTTG
AGAACGAGTGATCGGTCGAGCAGCAGTTCTTTATGGCTAGCGTTTGGACT
GGACCAACGCTGTGACGAGTTATTGGAAAAATAAAAATATAACGGAATTC
TATGTTTTCTCTGGATCCTTACTGTTACCCCATACGGTCGTGCAGAAACT
CCGCGAGCAGTAGCCAGGCCACATCAATCTCAACTTATCGTAGCCCCGGT
GTGACTTCGTAACAAGCACTCCGGGTCGTCGAATTGACACTGTACCAGGT
AGTGTGAAACACTTGAATTGCCAGCAGTAAGTGCAGATCTCAGCGGACAT
GGGAAGCAGGTAGAGCGTTTCCCATGAACAAACCACTGCTCGATGCGTAT
AGCCAACACCAGCAACCATGCTCGAGCATTGTACCATGGTCTGACACATT
AACTCGCATCCCCCCCCCCGCGCGCGCCTCGTGAACTGCTTCGTATAAAT
ACAGCTGTCATACACAAAGTGGGTGTCGTTCTGTTCCAAGACCAGAGAGG
TGCACGCGTTGGGCAAGTCCTTAGATTTTAACAAGGGTGTATGTCGGAAG
TCCCTGACGTCAGGAGCAAGGTGCGAGGTTTTGAAGAGAGCATCAATGAC
AGCCAGCTACCGCACTTCAATTATACCCTACGTCAGAAAGTGGGCTGAGT
TTATGCAACGTAAACATGTACACAACAAGCAGTAGAGTGCCACAAAACAC
GGGTCGTTTTCTTTGAGATTCACACCATGCGCCATGTCGGCCGCGTGCGG
TTCGCGGGTTCCGAGGTCGTGTGATACTCTTGTTCGGTGTCGAATATACT
GTTCGCGGGAAAGAAGTAACCAGGCGTCGGTGCGTGTACTGTAAATTGTA
CCTGCTCTTAGGGTCCAACCCGAGGCATAGACGATCACGGTGGCTGGACC
ACACCATGCACATTCATAACTATCCTTCCTTCCCAGAACAACAACGTCAT
CGACAGACAATGTCATGACCGCACTAATGCGGTCTACCATATCCATATCA
CGGCCACCGCTAGCCACTTGAGAAACACGCATACGTCTTGCTTGACATGT
TCGAGCCGTTCTCTTTCGTAACATTGCAAACCCATTCGCCAGGGCAATAC
TTTCTGCGATGGCCATCGGGGAAGACGAGGCCTTGTTGGCGGCGCAACGG
GCCGCACTCACAAAAAAGCCCCAAGAGCGCGCATCGGCAGCCATGGAGAA
GAAGAGAGTGACGGCGGCGAGGGAGGGTAAAAACAAGTACGCGCGATCCA
GCGTTTTGAAGATCAAGGAGGTGAATATCGCAGGATCGCTCTCGTCAATC
TGAAGTCCCCCGTTTTATTTAATTTCATTCCAGAAAAATCAGTCAGGAGT
TGCCCCTCTTCTTGCACCAGAGCCTTTGACTCATTTAGGAGGTTGCGTCC
ACTTACGTCTGCCAGTGCAGAACAACAAGCTCAATTCAGGGGGTAGTCAG
CCCGAGGCATGCGCACCTTGAATGTTTTTGCACAATGCGGAAGTGGAAAG
TCGCTGAAAACCTCGGAGCACTTGTGTGCTTAGCAAAAATTGTAGGCTAC
GGCGTACAGCGGTCGTCAATAGCACAACAACCCTTGTGCGTTCAACCACG
TATCCATCCCTGTCTCCTCCTAGCATTTATTCCCCAACGCTTTACGATCT
ATATAATTTAGGTGTTCGACAGCCTCGACAAAGACGGTAGCGGCTACGTT
GACGAAAACGAGTGGCGGCGATTGACGGAAGACACTCCACTGGCCGCGTC
GGATGACACGTTCCTCTTCATCGAACGGGTGCGTCACTACTACAGCACTG
TCCCCACAACAACAGTTGATCGGCAGCTTTCTCCAACACAGCTAACGCCA
TACCCGTTGAAACCCTGCACGTCCCTCAATCAGCTCGTCAAGCATTGTTG
CTAAGGAAACCCCCATTGGTGCACGCAGAATACCCGTTAAAAATATATTC
TCGTGCTGTAAACGCACACATTGTTCACCATTGTAGACCCGACAACCCTA
ATCTCCTATTCATCTGCCTCGGACATGTTCCCAACGACCCCCGCCCCCTA
TCCACGCGTGCACGCTTCCGTTTACCCCCCTTACTTCGGCAGGAACGAGA
AGGGAAAATATCGATCGTGGAAGTTCTGAATGAGGTGCACCCGTTCGCTG
GGGATGCTGATTTGGCTAAGATGCTGGAGTGGATAAGTGAGGAGCCTACA
CAACAGGGAGCGGCGAGACTCGCCAATCGTGAACTTGCAGTCGCCGATCA
CGTAGAGATAGCGGCGCTCTTCAACATGTGAGAACGAACACGAAAACAAA
AAATCCCTTTATTTGTTTTACCGGGCATGTGGGCGTTCGGTAGACCAGCA
AATGCCGAGACACCAACGGTCGGTCGCCAATGGAGTTTCGTGAGAGGCAT
TGCCTGCCAAGGCCGACGACGTTCTGAAGAACGCAGACGTGTGAAGCATC
CTCATGCAGTTCTGAACGCAAGCTTCATTGGCGGCTTCAGGAGACGGATT
AAGTCTCCAAGAAATCGAACAATCAGACATGAAGAGTGGTTATGACTTTA
GCCCTTCTCCTTCGATAATGCATAACCGATGGTCCAGCGACAACGTGAGA
TTCTATGCACACAATGAAACAAGCTCAACAAGACTCGACTGTACCTTTCT
CACGTCACCAATCCCTCTCGCTCCGAAAAACTCCGCGAGTAGCTATGATG
CCGAAGGAAGTGGCGAGATGACCCTGAGCGAGCTTGCCAGTGCCATGGGC
GAGGTCGTGGGCCTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig105:543768..554332+

>mRNA_P-littoralis_Contig105.125.1 ID=mRNA_P-littoralis_Contig105.125.1|Name=mRNA_P-littoralis_Contig105.125.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1017bp|location=Sequence derived from alignment at P-littoralis_Contig105:543768..554332+ (Pylaiella littoralis U1_48)
ATGGGTAGTGCCAGCAGCACAGATATGATACGACGCTGTGTGGGGCCAGA
AGTCGCTCCACCAATAGTTAAATCGCTGGCCGGCGCATCGCAGCACATTT
TTGAGATGCTGGCGGTGCTGGTATTGTACGGCAAAATCCCCGCTAGATTC
AAAGTGCGAAATCTTTTCGAACTCTTCGACCTGGACTTCGACGGCAAGCT
TAATGCTGCCGAGACTATTCTCATGCTCAGGTCAGTTTTATCGGGCATAG
CAAAGTCAACGGGTGGCACTCAGCCGCCAAGTATTTCTGCCGTAGAGGCA
ATTTGGCAGCACATCGTCCGACTTGGCTACACGGACGAAGAGGAGCGGCT
GTCATACACAAAGTGGGTGTCGTTCTGTTCCAAGACCAGAGAGGTGCACG
CGTTGGGCAAGTCCTTAGATTTTAACAAGGGTGTATGTCGGAAGTCCCTG
ACGTCAGGAGCAAGGGCAATACTTTCTGCGATGGCCATCGGGGAAGACGA
GGCCTTGTTGGCGGCGCAACGGGCCGCACTCACAAAAAAGCCCCAAGAGC
GCGCATCGGCAGCCATGGAGAAGAAGAGAGTGACGGCGGCGAGGGAGGGT
AAAAACAAGTACGCGCGATCCAGCGTTTTGAAGATCAAGGAGGTGTTCGA
CAGCCTCGACAAAGACGGTAGCGGCTACGTTGACGAAAACGAGTGGCGGC
GATTGACGGAAGACACTCCACTGGCCGCGTCGGATGACACGTTCCTCTTC
ATCGAACGGGAACGAGAAGGGAAAATATCGATCGTGGAAGTTCTGAATGA
GGTGCACCCGTTCGCTGGGGATGCTGATTTGGCTAAGATGCTGGAGTGGA
TAAGTGAGGAGCCTACACAACAGGGAGCGGCGAGACTCGCCAATCGTGAA
CTTGCAGTCGCCGATCACGTAGAGATAGCGGCGCTCTTCAACATCTATGA
TGCCGAAGGAAGTGGCGAGATGACCCTGAGCGAGCTTGCCAGTGCCATGG
GCGAGGTCGTGGGCCTC
back to top