mRNA_P-littoralis_Contig212.29.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE) HSP 1 Score: 564 bits (1453), Expect = 1.430e-193 Identity = 330/438 (75.34%), Postives = 368/438 (84.02%), Query Frame = 3
Query: 237 MGRKRGLPARAREKLVAEEAAAAIDLDRKEAVLQAKPDEALFVLDAAGSGRKRRKIQKEAKTAKYLSKNEKKLVVHKYLGKGKARAANARKRISDPWAEGEEXXXXXXXXXXEALP-STRGKAGTGDAKPLLSLEGGG-------------EEGGSQGGDGFVVAPRVPGRNVKRPKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGDEXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKR-HNKDVIAGRSVPVNLGEELYGSLRQLKAQGSILLDKVELLKNNKAHPDRRRGKERAKKAPKGFKKKHTYKDRYKDD 1505
MGRKR LPARAREKLVAEE A+A+++++KEAVLQ KPD+ALFV+DAAGSGRKRRK++KEAK AKYLSKNEKKL+VHK+LGKGK RA R RISDPWA+ ++ EALP ST G+ D+ PLLSL+GG E GG QGG+ FV +PRVPGRN KRPK S RNLAKLGVCHPGQSYNPAE+DH+DVLASAVAVELKRQ AIEEESAP+SAGMS+ETLAVI XXXXXXXXXX G+SLGKPTPASGKLTRAQRNKQKRAKAAKHE+ +RR +K M KSI QVTALQ+EVA++ERLR+ERRQTKRLLKA+KAK+EAEGA AGGVFGPS GVAA+S KR +NKDVIAGRSVPVNLGEEL+GSLRQLKAQGS+L DKVELLK NKAHPDRRRGKERAKKAPKGFK KHTYKDRYKDD
Sbjct: 1 MGRKRRLPARAREKLVAEEVASAMEVEQKEAVLQRKPDKALFVVDAAGSGRKRRKVEKEAKAAKYLSKNEKKLIVHKFLGKGKPRAVG-RNRISDPWADEDQDEATNNKKPQEALPPSTPGEKEAEDSNPLLSLKGGAAAKATAAMEESAREPGGRQGGEYFVTSPRVPGRNAKRPKHSARNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVIXXXXXXXXXXXXXXXXXTTGLSLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNRKHMIKSIDQVTALQQEVAEQERLREERRQTKRLLKAQKAKVEAEGAAAGGVFGPSAGVAALSTKRQNNKDVIAGRSVPVNLGEELHGSLRQLKAQGSVLHDKVELLKANKAHPDRRRGKERAKKAPKGFKYKHTYKDRYKDD 437
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA) HSP 1 Score: 115 bits (287), Expect = 3.260e-24 Identity = 92/279 (32.97%), Postives = 139/279 (49.82%), Query Frame = 3
Query: 669 GDGFVVAPRVPGRNVKRPKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGD-EXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELYGSLRQLKAQGSILLDKVELLKNNKAHPDRRRGKERAKKAPKGFKKKHTYKDRYKD 1502
G+G VV R R + + PGQSYNP + DHE+ +A AVA+ELKR+ A++ +AP++ G+S ETLA++VGD E X ++L K +GK+TR K T ++ A+ E+ + + R E R+ K++LKA K + + A DV+ S+PVNL EEL GSLRQ++ +GS+L+D+V +LK HPD+++ RAK K KK+ +++RYKD
Sbjct: 91 GEGAVVRAR---NGTDRSAKLTSYALGAPMALPGQSYNPEQGDHEEAVAEAVALELKREDAVKAANAPIAQGLSAETLALLVGDDEGSSSDEDSGXXXXXXDITLAKKQ--TGKMTRXXXXXXXXXXXXXXXXXXXXXXKSSTHEQHRIKAIGAELEQQAKDRAEARKAKQMLKANKDGVPLKDA----------------------DVMQAPSIPVNLAEELSGSLRQMRTRGSLLVDRVAMLKRVGVHPDKQKAAARAKMEKKP-KKRFKFQERYKD 341
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: A0A7S2JT46_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT46_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 9.300e-17 Identity = 92/265 (34.72%), Postives = 140/265 (52.83%), Query Frame = 3
Query: 681 VVAPRVPGRNVKR---PKQSVRNLAKLGVC--HPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGDEXXXXXXXXXXGSDNAGVSLG---KPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAK--KDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEEL-YGSLRQLKAQGSILLDKVELLKNNKAHPDRRRGKER 1442
+V P R +R P + K+ V H GQSY P ++ H+DV+ A+AVEL+R+ A+E P+ GMSKETLA++ XXXXX D G++ +P KLTRAQRN+QKR + +H+V +++ K K +S+ +V + + + EE +KER+Q L EK K E G V +S+K D I ++PV L E+ GSLR +K +GS++ +++E + K RR G++R
Sbjct: 167 LVTPAEAARRAQRKSKPHTHKQQQPKVAVDLPHGGQSYQPDKEQHQDVIGEALAVELRRKDAVEYRRTPLWNGMSKETLALLDTRSDSDSDXXXXXXXDEGGIAAAGNFQPKKKKEKLTRAQRNRQKRVR--QHDVEMQKQKRLKKFNQSVMEVKTISKTLRREEADKKERKQQLNEL-LEKKKAEPLGVNL---------VEKLSSKI---DPINAPALPVALSSEIAQGSLRSIKPKGSLMSERLESMAARKMAHKRRIGEKR 416
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: B8BPY1_THAPS (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY1_THAPS) HSP 1 Score: 85.9 bits (211), Expect = 6.670e-14 Identity = 84/236 (35.59%), Postives = 121/236 (51.27%), Query Frame = 3
Query: 714 KRPKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGD----EXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELYG------SLRQLKAQGSILLDKVE 1391
K + + + L V HPGQSY P ++ H+D + A+++E++R A E +S P+S+GMS+ T IVG+ EXXXXXXXXXX + A + K KLTRAQRNKQKR KA + + R+ K I +V + V +EE+L R+ L+ EK G + A D + S+PV L EEL G SLR + +GS++ D++E
Sbjct: 214 KHAQLTAKPTLALEVAHPGQSYRPDKEQHQDAIGEALSIEIRRNEAEEYKSKPISSGMSEFTKRFIVGESDSEEXXXXXXXXXXXGNVATMGATKLIKKKEKLTRAQRNKQKRVKAEQTALFARKQSKQFNHQINEVHKHSKAVKEEEKLHSVRQSELAQLRDEKKSQP---------LGKNLWNAVSQV-----DPLRAPSLPVALTEELEGKSGGKGSLRTVTPKGSLVTDRLE 435
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: A0A7S4UQA2_9STRA (Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQA2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.650e-13 Identity = 94/283 (33.22%), Postives = 140/283 (49.47%), Query Frame = 3
Query: 681 VVAPRVPGRNVKRPKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIV--GDEXXXXXXXXXXGSDNAGVSL-----GKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEG-------ATAGGVFGPSTGVAAMSAK-RHNKDVIAGRSVPVNLGEELYGSLRQLKAQGSILLDKVE-LLKNNKAHPDRR------RGKERAKKAPKG 1463
VV R +++ +P + + H GQSYNP E+ H+DV+ A+++ELKR+ A+ P+S G+SKETLA++V DE XXXXXXXXX S K K TR QRNKQKR + + R+ +K + + +E+ EERL+KER + + ++ EK K E G + + PS VA S R KD + V SLR+++ +GS+L D+ + ++ N +P R +GK+R K KG
Sbjct: 201 VVKIRTLTKSLSKP------TVPIELAHGGQSYNPDENQHQDVIGEALSIELKREEALAYRKTPISNGLSKETLAIMVHSSDEEXXXXXXXXXXXXXNNDSFQPRLKSKVINRENKKTRVQRNKQKRTREEHASIQQRKKQKTFLHEVNEAKLRAKEIKQEERLQKERAEYLKRVQEEKRK-EPLGLNFLHKLSDVDPIHVPSLPVALTSELGRKEKDXXXXXNETVPTATT---SLRKVRPKGSLLTDRSQSMISRNMVNPKRGANKFIVQGKKRTMKGGKG 473
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: B5Y3Y8_PHATC (Ribosome biogenesis protein NOP53 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3Y8_PHATC) HSP 1 Score: 80.5 bits (197), Expect = 2.660e-12 Identity = 66/236 (27.97%), Postives = 116/236 (49.15%), Query Frame = 3
Query: 684 VAPRVPGRNVKRPKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGDEXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELY-GSLRQLKAQGSILLDKV 1388
AP ++ K + + V GQSY P + H+ ++ AV +E++R AIE P++ G+S+ET A++V D ++ + G + KLT+AQRNKQ+R + + + ++R +K + K +G+V ++E+ ER +K+ + E+ K EAE G+ + + KD I+ + PV L E+ SLR +K +GS+L D++
Sbjct: 155 TAPEACVIKAQKAKVQPKLAVAVDVAKDGQSYRPDPNAHKSIIQKAVDLEMRRGKAIEYNRTPIAQGLSEETKALLVEDTDSEDEESDVE-NETEDILAGSLPRRTDKLTKAQRNKQRRLRKEQVLLEMKRREKKLMKQVGEVGRYRKELTRAEREKKD--------EVERQKAEAEKKRPLGID--------LEHQHAAKDPISTPTYPVALPNEIQRSSLRTIKPKGSLLTDRM 373
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: A0A448ZT81_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZT81_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 8.460e-10 Identity = 106/390 (27.18%), Postives = 165/390 (42.31%), Query Frame = 3
Query: 321 KEAVLQAKPDEALFVLDA----------AGSGRKRRKIQKEAKTAKYLSK---NEKKLVVHKYLGKGKARAANARKRIS--------DPWAEGEEXXXXXXXXXXEALPSTRGKAGTGDAKPLLSLEGGGEEGGSQGGDGFVVAPRVPGRNVKR-----PKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGDEXXXXXXXXXXGSDNAGVSLGKPTPAS------GKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELYG--SLRQLKAQGSILLDKV 1388
+E + K DE LFVLD A +++RK AK + + + N + A A KRI D WA+ ++ AL ++ KA AKP ++ S G G V + V K PK R + + GQSYNP + DH++ + A+ VE KR+ A + S GM ET A+++GD SD PT + K+TRAQRNKQKR +A ++E+ R+ +K + V ++ R + EE ER++TK K E+ K++ E + ++ T +A + + + PV L EL SLR +K +GS++ D++
Sbjct: 32 EEGAVAEKADEELFVLDTTAVVPSKKQIAAKKKQQRKQSVSAKEQRQIQRLVDNHSAKELEALAKTTSITAKRAPKRIKARQTRPTFDMWADEDDSGGNS-----SALVKSKSKASE-SAKPKTAVAV------SSGPHGIVPSNHVKIGTTKAMPAPLPKNKDRAPVMVDLAGSGQSYNPDQKDHKNAIQKALLVETKRKVAEKNAKESASQGMRPETRALLLGDSDSEDE------SDXXXXXXXXPTTEAIAKKRPEKMTRAQRNKQKRIRAEQYEIKQRKKQKQFAHELRGVKSVNRTLXKEEA---ERKKTKE--KIEQLKLDTERSKGKDLY---TQLAEENPRY-------APTYPVALPGELRSGASLRTIKPKGSLVTDRM 388
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: K0TBJ2_THAOC (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBJ2_THAOC) HSP 1 Score: 72.0 bits (175), Expect = 1.590e-9 Identity = 77/244 (31.56%), Postives = 123/244 (50.41%), Query Frame = 3
Query: 687 APRVPGRNVKRPKQS---VRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGD-EXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELY-----GSLRQLKAQGSILLDKVE 1391
AP++ + +K + + N + V HPGQSY+P ++ H+D + A+++E++R A++ + P+S GMS+ T I+ + +XXXXXXXXXX + N + K KLTRAQRNKQKR KA + + RR +K + +V + E +++R + LK EK K G + K I ++PV L E+ G LR L +GS++ D++E
Sbjct: 184 APKLSNKQLKARRNAELAAPNKLAVEVAHPGQSYHPDKEHHQDAIGEALSIEIRRNEALDYKRKPISDGMSQFTKEFIINNSDXXXXXXXXXXTATNVSTKIIKRKE---KLTRAQRNKQKRVKAEETALKERRERKKFMHQVHEVKKTSKXXXXXEEEQRQRNEELAKLKHEK-KARPLGKN-------------VWEKISQDSPIDAPTLPVALTGEIRSGKEGGGLRTLAPKGSLVTDRLE 410
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: UPI0014590C39 (ribosome biogenesis protein NOP53-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014590C39) HSP 1 Score: 70.5 bits (171), Expect = 4.660e-9 Identity = 73/269 (27.14%), Postives = 115/269 (42.75%), Query Frame = 3
Query: 696 VPGRNVKRPKQSVRNLAKLGVCHPGQSYNPAEDDHEDVLASAVAVELKRQA-------AIEEESAPVSAGMSKETLA--VIVGDEXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELYGSLRQLKAQGSILLDKVELLKNNKAHPDRRRGKERAKKAPKGFKKK 1475
VP K+P + + + V PG SYNP+ +DH+++LA A VE+KR+ A+E + +SA + L + G + +S+ P K TR QRNK+K K KH + K K I ++ ++ E+ E+ ER K +K + E G M+ ++ K + + L EEL GSLR LK +G +L+D+ + L+ R ++ K PK F KK
Sbjct: 181 VPKHYNKKPSE----MTGVQVPDPGASYNPSYNDHQNLLAKAYDVEVKRERKERKLYNAVEAKFRSISAAELEANLQAEMTAGLNKEEEDPVEFTEEELEKLSVAPPVRREDKKTRIQRNKEKNIKEKKHGKIKEKTTKTREKEIFRLKTIKAEIKAREKKLSER------AKQKKERYEKSG---------------MNTRKLGKVKFEEAEIEIKLSEELPGSLRLLKPEGHLLVDRFKSLQKRNVIEPRLEASKKRKYKPKLFLKK 424
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Match: A0A7S0CMX1_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMX1_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 2.480e-7 Identity = 64/233 (27.47%), Postives = 110/233 (47.21%), Query Frame = 3
Query: 750 LGVCHPGQSYNPAEDDHEDVLASAVAVELKRQAAIEEESAPVSAGMSKETLAVIVGDEXXXXXXXXXXGSDNAGVSLGKPTPASGKLTRAQRNKQKRAKAAKHEVTIRRAKKDMTKSIGQVTALQREVADEERLRKERRQTKRLLKAEKAKIEAEGATAGGVFGPSTGVAAMSAKRHNKDVIAGRSVPVNLGEELYGS---------LRQLKAQGSILLDKVELLKNNKAHPD 1421
+ V H GQSY+P + H+DV+ A+A+ELKR+ A+E P+ A MS+ETL +++ ++ D + K+ R RN+++R A + R+ +K ++ V + ++V +E +E+R + K E+ G M++K KD I S+PV L EL GS LR++K +G++L ++V L++ K D
Sbjct: 3 IEVAHGGQSYHPDGELHQDVIGEALAMELKREEAMEYLKTPI-AEMSEETLRILINEDSESEEE-----EDIETMETDVYRKKQEKIPRNVRNRRRRHAALQLVYLERKKQKQFLSTVHFVKSAHKKVRKDELTNQEKRDQIQTWKDEEIAQNPLGH-------------GMASKLSEKDPIRFPSLPVALTSELNGSKDNGNVNVPLRRVKPKGNLLEERVYSLRDRKLLTD 216 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig212.29.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig212.29.2 >prot_P-littoralis_Contig212.29.2 ID=prot_P-littoralis_Contig212.29.2|Name=mRNA_P-littoralis_Contig212.29.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=424bp MGRKRGLPARAREKLVAEEAAAAIDLDRKEAVLQAKPDEALFVLDAAGSGback to top mRNA from alignment at P-littoralis_Contig212:93695..106350+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig212.29.2 ID=mRNA_P-littoralis_Contig212.29.2|Name=mRNA_P-littoralis_Contig212.29.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=12656bp|location=Sequence derived from alignment at P-littoralis_Contig212:93695..106350+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig212:93695..106350+ >mRNA_P-littoralis_Contig212.29.2 ID=mRNA_P-littoralis_Contig212.29.2|Name=mRNA_P-littoralis_Contig212.29.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1272bp|location=Sequence derived from alignment at P-littoralis_Contig212:93695..106350+ (Pylaiella littoralis U1_48)back to top |