mRNA_P-littoralis_Contig212.27.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig212.27.2
Unique NamemRNA_P-littoralis_Contig212.27.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig212.27.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig212contigP-littoralis_Contig212:84436..89389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1890
Hectar predicted targeting categoryother localisation
Exons5
Cds size1185
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig212.27.2prot_P-littoralis_Contig212.27.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig212 84959..87863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.0869548-UTR-P-littoralis_Contig212:84435..849581680790035.0869548-UTR-P-littoralis_Contig212:84435..84958Pylaiella littoralis U1_48UTRP-littoralis_Contig212 84436..84958 -
1680790035.1491919-UTR-P-littoralis_Contig212:89207..893891680790035.1491919-UTR-P-littoralis_Contig212:89207..89389Pylaiella littoralis U1_48UTRP-littoralis_Contig212 89208..89389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.097551-CDS-P-littoralis_Contig212:84958..858571680790035.097551-CDS-P-littoralis_Contig212:84958..85857Pylaiella littoralis U1_48CDSP-littoralis_Contig212 84959..85857 -
1680790035.1099026-CDS-P-littoralis_Contig212:86177..863401680790035.1099026-CDS-P-littoralis_Contig212:86177..86340Pylaiella littoralis U1_48CDSP-littoralis_Contig212 86178..86340 -
1680790035.129746-CDS-P-littoralis_Contig212:87254..873101680790035.129746-CDS-P-littoralis_Contig212:87254..87310Pylaiella littoralis U1_48CDSP-littoralis_Contig212 87255..87310 -
1680790035.140382-CDS-P-littoralis_Contig212:87796..878631680790035.140382-CDS-P-littoralis_Contig212:87796..87863Pylaiella littoralis U1_48CDSP-littoralis_Contig212 87797..87863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig212.27.2

>prot_P-littoralis_Contig212.27.2 ID=prot_P-littoralis_Contig212.27.2|Name=mRNA_P-littoralis_Contig212.27.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=395bp
MVGLRCVHGMRNRQAAHRSKASGPEKLSRKGTSQRTGCDFQLSIRWPVQS
FTHKHPYVTAMHLDHNHPVSNMPVDVKVRRPKVKAAKDASALSVQSNGIV
PPPLPLLPPQQSPQPPPPAPAPAESFQASTHHTAALAQWFKTAGRGFPRA
GGAAAAAAPDRTRINGSSGTLQNTALLNIWPRFAGGGGGGGGSGGGSGGG
SGSGSSGVFAGGEAADLNLLVRVRQKLYVDMLKDVSDIVGDAVVNLPPDT
VRHLVAQFVDNVRRAARIQAGVGLLVAQPGVGGGSNANANANANTEVNES
SSNANSSHNDHNNSSSSSSSSNNNNSSSNNSNGSNNDNNNNNHNNDGGRT
GNSIKANDDNNNNNNIVDDDSNNSINAGVPCGSGGGGGLKRKHT*
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mRNA from alignment at P-littoralis_Contig212:84436..89389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig212.27.2 ID=mRNA_P-littoralis_Contig212.27.2|Name=mRNA_P-littoralis_Contig212.27.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4954bp|location=Sequence derived from alignment at P-littoralis_Contig212:84436..89389- (Pylaiella littoralis U1_48)
AGCGGCAGCAGGGGTGGAGGTACAGCGCGGAGGCTCTACGAGATGCCCTT
CTTCGCATCCCTACCGAAGGGACGACCATCGAAGAGGTCGAGCTGTCTGT
CCGGAAGATCTGCGGGCGGCACGGGGTGAAACTCGCAATCGCTACCTCTG
AGTCCCAGAGGGGCTCCGGAGGTCGCAAAAAGGTACCAGTATTATCGTTC
TTGTGTATACATCCGAATTGATAGCCACAGCCAGTCTGTCTGTCTGTCTG
TCTTTCTGTCTGTCTGTCTTTCTTTCTCTCTGTCTGTCTCTCTTTCTGTC
TCTCTGTCTCCTTGTTTGTTCGTCTGTATGTGTCTCCCTCTCTCCCGCTC
TCTGTAGCTCTCTTTTTTCGCTTTCTCTCTCTGCATGTCTCCATCTCTTC
TATCTCGCTCTGGGTCTCTGTCTCTTCCTCTCTCTCTTATCTATCTGCCT
GTTCATCTGCCTGGAACGTTAAAAAAAATGAAAACAGGTTGCATAATATG
CTGCTGTACCATCTCTTTTTGTGTTATTTCTATGATCCGTTTTGCTTTTC
TTCCTCGTCGCTGTTTATCCCCATCCACTCTGGAGCCCCGTGTCTTCTTC
CAGCGGTAGTACTGGTAGTGTACTCGACGCAGCAAACGCCTCCACCCATC
TGCGTGGTACGAAGGGCTGAAACTCCCAATCGCTTCCTCTGGACCCCTGG
AGGAGGGGTCGGAGATCGCGGTCAGGTGTAAATATCCGAAATTATATAGT
CAGTCTGTCTTCAACTTGAAATTGGAAACGCAGAGCAGATGTGTGACTCA
TTGCGTTCAATAATAAGCAGATCTAGACCATCGTCGAGAGAGAGAGGCGC
ATAAACTGATGCAAGAAAATATAGATCCGTTTTTGTACGTGTATGTACAT
AATGCAAAATGAGTTCTTGTCGCCTTTTTTGTGTCAGGTTAGCTTTTCTA
CTTTCGAGTTTCTTGCACACGAAGATCTCTTGACCTTGTCGTCCGTGTCT
CTATCTCACTCTGTTGGGCTCTCTCTTTTCGTTGCATTTGTCTCTCCGGC
TGTTCTCTCTCTTCCTCTCTCTTTTCGTTTTCTCTCTCTCTTCGTTATAT
TTCCGTTTTTCTCTCTCTCTTTCCCTGCCCTTCTCTCTCTCTTCGTTGTC
TTTATCTCTCTCTTTCTCTAAATTTCTCCTTCTCTCTCCGTCCCTCTCTC
TTTTCCTCTCTCTTCTCTTTTTCTCTCTCTGTCTCTCTCTCTCTCTCTCT
CTCTCTGTCTCTCTCTCTCTCTCTCTCTACCTCTCTCTCTCTCTCTCTCT
ACCTCTCTCTCTCTATCTCGTTCTATTTCTCTCTTTCCCGCTCTCTTTCT
CTCTCCTTCTCTCTGTTTCCCTCTCTCTTTCTCTCTGTCTTTCTGGCTTC
ATATATCTCTCTCTCTCTCTTCCTCCCTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTGCGCCTGGGTCTCTATATCTCTGTCTCTGTCTTGTCTGTTTG
TCTGCCTGTCTCCCTGTCCCCAACAGATGGTGGGGCTGAGGTGCGTGCAC
GGGATGCGAAATAGACAGGCCGCGCATCGGTCGAAGGCTTCCGGTGAGTC
CGCCTGAAGAGGCCTGCCTGCGCTTCGTGCAACCGTTCAGTGCTGATGCT
CGGAAAACAGTCGATCGCACCACGACCCTGTGCGTTCACGCTTTGCACTG
TCTGTCTGCTCGCCATCCTATTCGCCGGTGGTAGTGCTGTCGACTCTGCT
GGTGCGAGACGCTGGTGTTGGTGCTGATGCTTGCACGTGTGCTGGTGCTG
GTGCGCATGTGGCCAGTCGAGACGACAGCATGAGTGATGCCGGCGTCTGT
GCTGTCTCGCTACGCAGTGTTCCAGAACATTGATCACGTAACTCGCCTAA
AGAGCGCCGAGAGCCTCCCGGGTGATCTATAGGCTCCCTCCCTCTGGCAA
CCAACCGCTGTCTCCTCCGCTGGAGCTGGTGCTAGTGCTGGTGCTGGCTT
GTTTATCATGTTTCACGGTCGAGCCTCGCTGAAACCACGCTCTACCCATG
GTACCTACCTTTTCGTGACTTTCCACCAGGCCCCGAAAAGCTTTCGCGGA
AGGGCACAAGTCAGCGGACGGGCTGTGATTTTCAGGCGAGTGGTGGGGCA
CTATTTTTCTTGTTGTATCGGATCATCCACGTGGTCGACATGATTCGTAA
CGTGGACCATGTCTCCCCGCGTTATTTGTTTCTTCTTCTTCACACCGGAG
GAGTCCAAGCACTTACACCGGTCTCGACACCATCTTTTTCGTAAGTTTTT
TCAGTTTTTCAGCTCGATTTTTCCAGCAAAAGCGCTGTGCTTCGTGTGTC
GACAAGCGATCACCGGGCCCCTCTTGGTGCCGGGATTCCCTTGGTGCCGG
GCTCATAACTCACCTCAATCAGAGTCTAGTGGACGGGTCCATCGAACGCG
ATCAGGCGTCTTGTCTAGAGAGCCGCGCCCTTCATCATCCAGGAGTATCG
CGTGGTTTGTCAGAAAAGATGCAAGGCTTGACGTGGCATTCGTCTTGTCT
CTCGTGACTACCGGTACCCATGACTACGGTTGTGTTATGAGCCCCGCCCT
CTGTCGTCTCAAAGCGATTGGCATGCGTCGCGCCTAAGAAGCCCAGTCCT
GCATCATCCAGGAGCACGAAGTCGTTCTCATATAAAAAAAAGAAAGAGGT
TTTTGGCCACAAATCAAGCTGGTGGCCACGAAGGTGGTTTGATACGTCCC
AAAAAATAATACGAAGTGCTTTCGTAGTACTTCGAGCATGTCAAGGTTGT
CTCAAAGATGCAAGGCTCGATGTAGAATCCGACTTGGCTCATTTCCGCCT
TCTCGTCGTCGTCGTCTTTGTCGGTTTTGGTGCTTTGGCAGCCTGTCGCC
TGCTTGTCCACCAAACCTTTCGATCGCTTCACGCTCCGAGTACCTCCCTT
TTTTCTAACTGCTGTGCTGCTATTGTTGGTGTCAACAGTCCCGTTGACCG
TCTCGTCGTTGATGCTGTTGCTGATGCTATTGCTGTTGTGCTTTGGCAGC
TTTCCATCCGATGGCCTGTCCAGTCTTTCACGCACAAGCACCCCTACGTC
ACAGCGATGCATCTGGACCACAACCACCCCGTGAGCAACATGCCGGTCGA
TGTAAAAGTACGACGGCCCAAGGTTAAAGCTGCAAAGGATGCTTCCGCCC
TCTCGGTACAAAGTGAGCATGTGTGCGCGGTGCCATACACTATCGGCTCG
CGATCAAGAAAGTGGTTTAGAAGAAACTGAGACTGAGATTTTGGAAAAAT
TAAGAAAGTGGCGAGGCTCAGTGGCGAATACCACACAAACTTCCATATAC
AGTATCGGACGAAAAGCTCGGCTATGGCCTCATGAAAAAGAAAGTCAGGC
GGGGCCTGGTTTCTGTTTTCGTGATACCGGGCGTATTTGTTGTGTGGCAT
GCTTCACCTCTATGTATGCGCTACACGAGAGGTATCACACGCTTACCCCC
TTGTGTGTCTTTTCTATCCCTCACTCCAGCAGGCAATGGAATCGTACCGC
CACCACTGCCACTGCTACCGCCGCAACAATCACCACAACCACCACCACCA
GCACCAGCACCAGCAGAGTCGTTCCAAGCGTCCACGCACCATACCGCCGC
CCTTGCCCAATGGTTCAAGACCGCTGGTAGGGGCTTTCCTCGTGCGGGCG
GCGCAGCAGCAGCAGCAGCACCGGACCGCACCAGAATAAACGGCAGCAGC
GGCACCTTGCAGAACACAGCCTTGTTGAATATTTGGCCCAGGTTCGCCGG
AGGTGGTGGCGGTGGCGGTGGTAGTGGCGGTGGTAGTGGCGGTGGTAGCG
GGAGCGGTAGCTCCGGCGTCTTTGCGGGCGGGGAAGCAGCAGATCTTAAC
TTGCTCGTGCGGGTGCGCCAGAAACTGTACGTCGACATGCTCAAAGACGT
CTCGGATATCGTGGGCGATGCGGTGGTGAACCTGCCCCCCGACACGGTCC
GGCACCTCGTGGCACAGTTCGTGGACAACGTGCGGCGGGCTGCCCGTATA
CAGGCGGGGGTCGGGCTCCTCGTCGCGCAGCCAGGAGTGGGCGGCGGCAG
CAACGCCAACGCCAACGCCAACGCCAACACCGAGGTCAATGAAAGCAGCA
GCAACGCCAACAGCAGCCACAACGACCACAACAACAGCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAATAGCAGCTCCAATAACAGCAACGGCAGCAA
CAACGACAACAACAACAACAATCACAACAACGACGGTGGTAGAACCGGCA
ACAGTATCAAGGCCAACGACGACAACAACAACAACAACAACATCGTTGAC
GACGACAGCAACAACAGCATCAACGCGGGGGTTCCTTGTGGTAGTGGTGG
TGGCGGTGGCTTAAAAAGAAAACATACGTAGCAGGAGAGTGCTGCTACCA
TAAGCAAGTACAGAAAGTTGTCCCTAGCAGATCAGTAACGTCAAAGTAAA
TGTAGTCCGAGGCTCAATCTATCACTTGTTTACGTCGCTCAGGTAATCCT
GTTGTTTTGAATGGCAGGATTCAGGTGGGACCCATTATTGAACTGTTTTT
CAAGAAAGTGATGTTTTTTGTACAACCTGAGCCTGATTCTCCTTGTTTGT
AAAATAGTGTAAATTTGCTTTTTGTAGCGGCTGGCTTGGGCCACACGTTC
AGATCATACTTTCAGTAGTCCTTCGAACTATATACGCAGCAAGACATAGC
TATGCAAAGCTGTGTTTTTAAAATCATTTTGTACAGCAGTCATCGACCCC
TTGGTGCAAGGACGCCCACGGACTCGTTTCAAAAAGGAGAGTGTCCTCGT
CGTGGGGAAGGAGGAAGCGTGCTTGCCGTGGGGCATGATACCTACATGGT
CGAATATCGTCTGCGGGGCTCCTTGGTTCTGAGAGAAACTGTGCAGTCAG
GGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig212:84436..89389-

>mRNA_P-littoralis_Contig212.27.2 ID=mRNA_P-littoralis_Contig212.27.2|Name=mRNA_P-littoralis_Contig212.27.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1185bp|location=Sequence derived from alignment at P-littoralis_Contig212:84436..89389- (Pylaiella littoralis U1_48)
ATGGTGGGGCTGAGGTGCGTGCACGGGATGCGAAATAGACAGGCCGCGCA
TCGGTCGAAGGCTTCCGGCCCCGAAAAGCTTTCGCGGAAGGGCACAAGTC
AGCGGACGGGCTGTGATTTTCAGCTTTCCATCCGATGGCCTGTCCAGTCT
TTCACGCACAAGCACCCCTACGTCACAGCGATGCATCTGGACCACAACCA
CCCCGTGAGCAACATGCCGGTCGATGTAAAAGTACGACGGCCCAAGGTTA
AAGCTGCAAAGGATGCTTCCGCCCTCTCGGTACAAAGCAATGGAATCGTA
CCGCCACCACTGCCACTGCTACCGCCGCAACAATCACCACAACCACCACC
ACCAGCACCAGCACCAGCAGAGTCGTTCCAAGCGTCCACGCACCATACCG
CCGCCCTTGCCCAATGGTTCAAGACCGCTGGTAGGGGCTTTCCTCGTGCG
GGCGGCGCAGCAGCAGCAGCAGCACCGGACCGCACCAGAATAAACGGCAG
CAGCGGCACCTTGCAGAACACAGCCTTGTTGAATATTTGGCCCAGGTTCG
CCGGAGGTGGTGGCGGTGGCGGTGGTAGTGGCGGTGGTAGTGGCGGTGGT
AGCGGGAGCGGTAGCTCCGGCGTCTTTGCGGGCGGGGAAGCAGCAGATCT
TAACTTGCTCGTGCGGGTGCGCCAGAAACTGTACGTCGACATGCTCAAAG
ACGTCTCGGATATCGTGGGCGATGCGGTGGTGAACCTGCCCCCCGACACG
GTCCGGCACCTCGTGGCACAGTTCGTGGACAACGTGCGGCGGGCTGCCCG
TATACAGGCGGGGGTCGGGCTCCTCGTCGCGCAGCCAGGAGTGGGCGGCG
GCAGCAACGCCAACGCCAACGCCAACGCCAACACCGAGGTCAATGAAAGC
AGCAGCAACGCCAACAGCAGCCACAACGACCACAACAACAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAATAGCAGCTCCAATAACAGCAACGGCA
GCAACAACGACAACAACAACAACAATCACAACAACGACGGTGGTAGAACC
GGCAACAGTATCAAGGCCAACGACGACAACAACAACAACAACAACATCGT
TGACGACGACAGCAACAACAGCATCAACGCGGGGGTTCCTTGTGGTAGTG
GTGGTGGCGGTGGCTTAAAAAGAAAACATACGTAG
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