prot_P-littoralis_Contig211.38.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig211.38.1
Unique Nameprot_P-littoralis_Contig211.38.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length96
Homology
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.450e-14
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MRSLSRCASFRK---EDPDVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREEREEDGTAVVLLDPL 80
            +  + RC +  +   ED  V ++YL N++ HP+D+KYR +K  N+KF +EVWL  G+R  F+A+GFR+        +V LDPL
Sbjct:   29 LAEVQRCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKR----SGGIVGLDPL 107          
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.670e-13
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    6 RCASF---RKEDPDVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFRE 65
            RC +      EDP  A++YL NI  HP + KYR +KK N +F +EVWL PG+R  F AIGFRE
Sbjct:   12 RCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFRE 74          
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A7S1VQI1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQI1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-6
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   16 DVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREE 66
            +  ++YL NI+ HP++ KYRKI+  N+KF +EVW     R  F+A GF+EE
Sbjct:  373 NTCLKYLTNILRHPSERKYRKIRTANKKFYAEVW-NTAARGLFLAAGFKEE 422          
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A0L0DKI2_THETB (UBX domain-containing protein 6 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKI2_THETB)

HSP 1 Score: 52.0 bits (123), Expect = 1.290e-5
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   14 DPDVA--IRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREE------REEDGTAVVLLD 78
            DP VA  ++Y++NI+ HP+D KYR+IK  N+ FS+ +    G    F AIGF E+      +++  T +VL D
Sbjct:  212 DPCVATMLKYMDNILAHPDDPKYRRIKTSNKVFSTRIAPVSGALAFFAAIGFVEQPPKPDDKDQSATYLVLED 284          
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: A0A851LP38_CORCR (UBXN6 protein (Fragment) n=9 Tax=Aves TaxID=8782 RepID=A0A851LP38_CORCR)

HSP 1 Score: 50.4 bits (119), Expect = 4.470e-5
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 0
Query:    3 SLSRCASFRKEDPDVAI------RYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGFREER-------EEDGTAVVLLDPLTDERRRLAE 89
            S+    +F K+   V +      +YL+NI LHP + KYRKIK  N+ F   +    G+ R F AIGF  +        ++D   V+L+   T+E   L E
Sbjct:  129 SIMEIHTFNKDREKVRVGVETMAKYLDNIYLHPEEEKYRKIKLQNKVFQERISCLEGIHRFFQAIGFETKTLPVPGQGKKDSNPVLLVVETTEEYYVLKE 228          
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Match: UPI0004F09FB3 (UBX domain-containing protein 6 n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F09FB3)

HSP 1 Score: 49.7 bits (117), Expect = 8.230e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0
Query:   16 DVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWLQPGVRRTFIAIGF 63
            D + RYL+NI LHP + KYRKIK  N+ F   +    GV R F ++GF
Sbjct:  118 DSSCRYLDNIYLHPEEEKYRKIKLQNKVFQERISCLEGVHRFFQSVGF 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.38.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJ99_ECTSI5.450e-1440.96PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQA1_9STRA1.670e-1352.38PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S1VQI1_9STRA1.470e-647.06Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0L0DKI2_THETB1.290e-539.73UBX domain-containing protein 6 n=1 Tax=Thecamonas... [more]
A0A851LP38_CORCR4.470e-533.00UBXN6 protein (Fragment) n=9 Tax=Aves TaxID=8782 R... [more]
UPI0004F09FB38.230e-547.92UBX domain-containing protein 6 n=1 Tax=Merops nub... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00580PGNneucoord: 13..78
e-value: 2.2E-5
score: 33.9
NoneNo IPR availableGENE3D1.20.58.2190coord: 11..90
e-value: 2.7E-13
score: 51.4
NoneNo IPR availableCDDcd09212PUBcoord: 16..89
e-value: 1.1094E-16
score: 66.6368
IPR018997PUB domainPFAMPF09409PUBcoord: 20..77
e-value: 1.7E-14
score: 53.5
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 16..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:98646..101989 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.38.1mRNA_P-littoralis_Contig211.38.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig211 98646..101989 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig211.38.1 ID=prot_P-littoralis_Contig211.38.1|Name=mRNA_P-littoralis_Contig211.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MRSLSRCASFRKEDPDVAIRYLENIILHPNDLKYRKIKKGNRKFSSEVWL
QPGVRRTFIAIGFREEREEDGTAVVLLDPLTDERRRLAECSLEAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018997PUB_domain
IPR036339PUB-like_dom_sf