mRNA_P-littoralis_Contig211.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.37.1
Unique NamemRNA_P-littoralis_Contig211.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:96310..97871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size667
Hectar predicted targeting categoryother localisation
Exons3
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.1943212-CDS-P-littoralis_Contig211:96309..963481680790032.1943212-CDS-P-littoralis_Contig211:96309..96348Pylaiella littoralis U1_48CDSP-littoralis_Contig211 96310..96348 -
1680790032.204131-CDS-P-littoralis_Contig211:96819..972091680790032.204131-CDS-P-littoralis_Contig211:96819..97209Pylaiella littoralis U1_48CDSP-littoralis_Contig211 96820..97209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.216177-UTR-P-littoralis_Contig211:97209..972291680790032.216177-UTR-P-littoralis_Contig211:97209..97229Pylaiella littoralis U1_48UTRP-littoralis_Contig211 97210..97229 -
1680790032.224924-UTR-P-littoralis_Contig211:97653..978711680790032.224924-UTR-P-littoralis_Contig211:97653..97871Pylaiella littoralis U1_48UTRP-littoralis_Contig211 97654..97871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.37.1prot_P-littoralis_Contig211.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 96310..97209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.37.1

>prot_P-littoralis_Contig211.37.1 ID=prot_P-littoralis_Contig211.37.1|Name=mRNA_P-littoralis_Contig211.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MSVRGRRGACGRSDHGLPSEDGTANLCCVCRRSGPSDNSTRRAWRHIGAR
ECWDSLVEWEAAAAGTWPHQRDLLQEPFQANECICSRVDCVSGLWSKFRK
QRAAAAGGSSSLMETGQRALLGRYPSLPQQVNDMMAHLDVGGL
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mRNA from alignment at P-littoralis_Contig211:96310..97871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.37.1 ID=mRNA_P-littoralis_Contig211.37.1|Name=mRNA_P-littoralis_Contig211.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1562bp|location=Sequence derived from alignment at P-littoralis_Contig211:96310..97871- (Pylaiella littoralis U1_48)
CTGATCTGAGACCTTACAACGGCCCAGCACACTGTACCTCGTGGGTGAGG
GGTCGAAGCGCTGTCCAAATCGATGAAGGCAGGGCTGTGAACGAAAAAGA
TGGAAACGGGGTCACAGCTGAAATGGTATGGAAGGCTTGACTGACTGCCT
CGCTTGTGCTCTGTTCTACCGGCACGAGCACTGCATTCGATGCCCAGCTA
TGACTGCCACGGCATAAGGTTTGTACGTGGGGTGTGAAACAGCAGCTTTC
ACGCCAATCGCGCCATGGGCGAGTCCGGTAGGCGAAGGCAAAGCGTACGA
CGGTCCCAGCTGCTGTGACTGCTGTAGGCTACAGATTCTCTTCGAGTGCT
CCGCACTCAAAGGCAGCTCTAATCTCTAACAGTACGAGTTTGGGTTTGAA
CGGGCCATCGTTCGTCAGCTGACAACATGCCTAGCAGTTGGGTTGGGTGT
GGGGTGAGGATGGATGTCTCATAACGCCCATAACAACACTCTGAAATACT
CGCTCCCGCCCTCTCTTTCGCTGTATTTCGCCGCATGTTCCTCCAGGGAG
GAACTCCGCCTTGCTTCCACTCACCATTTTGTCACGTTTTTTTGGTTTTG
CTTGTCCTGATTTCTGTTCAACTGTCAACAACTGCTGCTCAGCACAACGC
GCGTCCACGGCCATGAGCGTGAGAGGGAGGCGAGGTGCGTGTGGAAGGTC
CGATCACGGCCTCCCGAGCGAAGACGGGACTGCAAACTTGTGCTGCGTCT
GTAGGCGCTCTGGCCCCAGCGACAACTCAACTAGGCGAGCTTGGCGACAT
ATTGGAGCCAGAGAGTGTTGGGACTCTCTTGTAGAATGGGAAGCTGCGGC
GGCCGGCACGTGGCCCCACCAGCGAGACTTGCTGCAAGAGCCTTTTCAGG
CGAATGAGTGCATATGCTCGCGGGTTGATTGTGTTAGTGGCCTGTGGTCC
AAGTTTCGGAAGCAACGTGCTGCAGCGGCCGGGGGAAGCTCGTCGTTGAT
GGAGACCGGACAAAGGGCCCTTCTTGGGCGGTATCCGTCGCTTCCTCAGC
AGGTGATCATTATCCTGTGTGCATGTGACTGCTGTTACAAAAAGTGTGAC
AGTGCAGCTGCTGTAAACTGCTGTAGACTGCGGTAGGGGAAGGGTGGCGA
TGTAGGCTGCGGCATACTGCTGTAGGGGCGTGGGTGGCCAAGAATGTTGC
TGCCGGCTGATGTAGAAAATCGGGTGACCAGAATGACTGCTGTACGAGAG
CGGAGAGCTTTATCTCGACCTTTATTTTCAGACGGTCGGCACCTGAAGTG
GTCAGGTTAGCCCTTCTACAATAAAATCGCCGGAAAAAAAAGCAGCCAAG
TATGTGAACACTAATCTGTGTTTTTTTTTTGCACTCGTCTTTATTTAATC
GTGGACAACGCGAGAGCACAAGCAAGCCTATGGGGCTACTCGGCGGTGTA
TGGATCGTTCTGTGAATGTATGTCAACAATTTCGAAATGATACTGAAACG
AATATCGGCATGCCTTGGGACAGGTGAACGACATGATGGCCCACTTGGAC
GTCGGTGGTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:96310..97871-

>mRNA_P-littoralis_Contig211.37.1 ID=mRNA_P-littoralis_Contig211.37.1|Name=mRNA_P-littoralis_Contig211.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig211:96310..97871- (Pylaiella littoralis U1_48)
ATGAGCGTGAGAGGGAGGCGAGGTGCGTGTGGAAGGTCCGATCACGGCCT
CCCGAGCGAAGACGGGACTGCAAACTTGTGCTGCGTCTGTAGGCGCTCTG
GCCCCAGCGACAACTCAACTAGGCGAGCTTGGCGACATATTGGAGCCAGA
GAGTGTTGGGACTCTCTTGTAGAATGGGAAGCTGCGGCGGCCGGCACGTG
GCCCCACCAGCGAGACTTGCTGCAAGAGCCTTTTCAGGCGAATGAGTGCA
TATGCTCGCGGGTTGATTGTGTTAGTGGCCTGTGGTCCAAGTTTCGGAAG
CAACGTGCTGCAGCGGCCGGGGGAAGCTCGTCGTTGATGGAGACCGGACA
AAGGGCCCTTCTTGGGCGGTATCCGTCGCTTCCTCAGCAGGTGAACGACA
TGATGGCCCACTTGGACGTCGGTGGTCTT
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