mRNA_P-littoralis_Contig211.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.15.1
Unique NamemRNA_P-littoralis_Contig211.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig211.15.1 vs. uniprot
Match: A0A6H5JK11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK11_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.580e-23
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 PVDTWMAFFRGLAREDKVRGFQRMWTATEDKEKNVIVNDLRHFFLEPLINAG 156
            PVDTWMAFFRGL R++KV+GF+RMW +TEDKEKNVIVNDLRHFFLEPLIN G
Sbjct:  214 PVDTWMAFFRGLTRQEKVQGFKRMWESTEDKEKNVIVNDLRHFFLEPLINGG 265
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BLAST of mRNA_P-littoralis_Contig211.15.1 vs. uniprot
Match: A0A7S2XUE6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUE6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.150e-8
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 PVDTWMAFFRGLAREDKVRGFQRMWTATEDKEKNVIVNDLRHFFLEPLI 147
            PV  WM F+      +K+  FQ MW  T D+EK VI+NDL+HFFL P++
Sbjct:  221 PVQPWMDFYTSQESTEKMNTFQLMWELTSDQEKTVIINDLKHFFLVPML 269
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BLAST of mRNA_P-littoralis_Contig211.15.1 vs. uniprot
Match: A0A6V1NCR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NCR2_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 2.330e-6
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    4 VDTWMAFFRGLAREDKVRGFQRMWTATEDKEKNVIVNDLRHFFLEPLI 147
             D W+ F+       K+  F++ W AT D+EKN+I+NDL+HFFL P++
Sbjct:  212 TDAWVDFYTSQDSAAKLDVFEKTWDATTDQEKNIIINDLKHFFLVPVL 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JK11_9PHAE1.580e-2384.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XUE6_9STRA4.150e-848.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1NCR2_HETAK2.330e-643.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:35713..37246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQ24
Preferred nameLONRF3
PFAMsLON_substr_bdg,Prefoldin,TPR_1,TPR_16,TPR_2,TPR_8,zf-C3HC4,zf-C3HC4_2,zf-C3HC4_3,zf-RING_UBOX
Model size324
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.19e-21
EggNOG OGsCOG0457@1|root,KOG0548@2759|Eukaryota
Descriptionpositive regulation of catalytic activity in other organism involved in symbiotic interaction
Cds size309
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.4959455-UTR-P-littoralis_Contig211:35712..357271680790031.4959455-UTR-P-littoralis_Contig211:35712..35727Pylaiella littoralis U1_48UTRP-littoralis_Contig211 35713..35727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.5108023-CDS-P-littoralis_Contig211:35727..357831680790031.5108023-CDS-P-littoralis_Contig211:35727..35783Pylaiella littoralis U1_48CDSP-littoralis_Contig211 35728..35783 +
1680790031.523458-CDS-P-littoralis_Contig211:36524..365911680790031.523458-CDS-P-littoralis_Contig211:36524..36591Pylaiella littoralis U1_48CDSP-littoralis_Contig211 36525..36591 +
1680790031.5343502-CDS-P-littoralis_Contig211:37060..372461680790031.5343502-CDS-P-littoralis_Contig211:37060..37246Pylaiella littoralis U1_48CDSP-littoralis_Contig211 37061..37246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.15.1prot_P-littoralis_Contig211.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 35728..37246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.15.1

>prot_P-littoralis_Contig211.15.1 ID=prot_P-littoralis_Contig211.15.1|Name=mRNA_P-littoralis_Contig211.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MAFFRGLAREDKVRGFQRMWTATEDKEKNVIVNDLRHFFLEPLINAGSSQ
ENDDDSSDDEGEGEGTAAVAAATESLEEEEAGTNGGVSASDPGAAGGSSG
KSD
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mRNA from alignment at P-littoralis_Contig211:35713..37246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.15.1 ID=mRNA_P-littoralis_Contig211.15.1|Name=mRNA_P-littoralis_Contig211.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1534bp|location=Sequence derived from alignment at P-littoralis_Contig211:35713..37246+ (Pylaiella littoralis U1_48)
CCGGTGGACACGTGGATGGCGTTTTTCAGGGGGCTGGCCCGCGAGGATAA
AGTGCGGGGTTTCCAGCGCATGTGAGAGATGAGATGGGTGTTTTTGCTGC
ACGATATTGGGCGAACCCCGTGCGTAACTAGCAACTTACGAAACTTGCTG
CATATCCTTGAGAGTGCAACTTTTCTCTGCCCGCTGTTTGGTCCCCCGCC
CCTGCCCCGCGTACTCGGGGTGGGAGAGGCGAGGGAAGCCGTTGCCCACA
CATGTTGGGGCTTTCTCGCCACGTTCGCCTATATGTTTTGTCACGCAGGG
CGCACCTGTGTCGACCGCGCCTCCGAGGTCTTGGTTCCCATACCTGTCAT
TTTTTGTTTCCCCTCAGTTGAGGTATTGCCGCGGGGTGTGTTCACCGCCG
CCGACGCCGACGGAGACCCGTTCGTTCCGGTTCCAGTTCTGTCGTGTGCG
TTGAATTTTTGTGCCCTACGATCGCGACGAGAAATTGTAAGATGCGCATG
ATGGATGGCACATACCCTTCCCCTCGGGTTGTGTTATCCTGGTTGTGCCA
AGGGGGGGGAGGGAAAATAGTGCCGTAAGCCGACCAAGGATACACGCCGT
TCGTGCCTCGCCATCTTGTCTGCTCGTTGTTCCATTATCTTCGTCTTGTC
TTGCTTTGATTTTGTTGCCTCTGTGTGCGGTTTGATCATTTTTTGTCTTG
ATTTCGGCTTTCTGTTTGTATGGAAGTTGTCCGTGTTGTTTTGCCTTCTC
CCCACCCCCTGATTGTTGGTCGCCGTGTTGTCTCGTGTTGTCTCGTGCGT
CTGTCGGGGCAGGTGGACCGCTACGGAGGACAAGGAAAAAAACGTAATTG
TCAACGACCTGCGGCACTTTTTCCTCGAGGTGTGTGCTTGCGTGCGTCTC
TGCGTGCATTGGTGTGGTCGTGTCCTGTGTGTGTGTGTTTGTGAGCGATT
GCCGCGTGTAAATAGGTGCGTACCCGGTGTTTTCGTGCCTTGTGCGTTCA
ACGTAAATCCGGAGTACCAATATGTTGTGGTTCGTATGTATTGGTGTGTC
GTGTATGGTGTGTTGTTGCCGCGGCCGTTTTTTTCAAGTGCCGCGTAGAT
CGCATTCTTGTTCCCGATTCCCTGATACCTTCAAGAGCGTGGTGTAGCTT
ACGCTCCACTTGAACGGATTTTTGTCGAAACGGCTTGGGACTAAAATAAT
CAGGAACTAAATGTGCAAATCCCATACCCCGGCCACCATTTCGGTCTCAC
AGCCCCTAACTCACCACTCTTCGCGCAACCAACCGCCCACTCGGTTGGCC
TGGCGCAATCTCGCTCGTGTCTACGCGCCACGAACCGCACTACCGCAGCC
GTTGATAAACGCGGGGTCGTCTCAGGAAAATGACGATGACAGTTCGGACG
ATGAGGGGGAGGGGGAGGGGACTGCGGCGGTAGCGGCGGCGACGGAGAGT
TTAGAAGAAGAGGAGGCGGGAACGAACGGGGGAGTGTCAGCATCTGACCC
CGGGGCGGCGGGCGGAAGTAGTGGCAAGAGCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:35713..37246+

>mRNA_P-littoralis_Contig211.15.1 ID=mRNA_P-littoralis_Contig211.15.1|Name=mRNA_P-littoralis_Contig211.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig211:35713..37246+ (Pylaiella littoralis U1_48)
ATGGCGTTTTTCAGGGGGCTGGCCCGCGAGGATAAAGTGCGGGGTTTCCA
GCGCATGTGGACCGCTACGGAGGACAAGGAAAAAAACGTAATTGTCAACG
ACCTGCGGCACTTTTTCCTCGAGCCGTTGATAAACGCGGGGTCGTCTCAG
GAAAATGACGATGACAGTTCGGACGATGAGGGGGAGGGGGAGGGGACTGC
GGCGGTAGCGGCGGCGACGGAGAGTTTAGAAGAAGAGGAGGCGGGAACGA
ACGGGGGAGTGTCAGCATCTGACCCCGGGGCGGCGGGCGGAAGTAGTGGC
AAGAGCGAT
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