mRNA_P-littoralis_Contig211.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.63.1
Unique NamemRNA_P-littoralis_Contig211.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:200060..201676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size205
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790030.8298616-CDS-P-littoralis_Contig211:200059..2001011680790030.8298616-CDS-P-littoralis_Contig211:200059..200101Pylaiella littoralis U1_48CDSP-littoralis_Contig211 200060..200101 +
1680790030.8404424-CDS-P-littoralis_Contig211:201514..2016761680790030.8404424-CDS-P-littoralis_Contig211:201514..201676Pylaiella littoralis U1_48CDSP-littoralis_Contig211 201515..201676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.63.1prot_P-littoralis_Contig211.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 200060..201676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.63.1

>prot_P-littoralis_Contig211.63.1 ID=prot_P-littoralis_Contig211.63.1|Name=mRNA_P-littoralis_Contig211.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
HPTEPTTIVEGQAEAAFQESSVSGDKPAEAFMKSIISVQNAWNKSLIHDV
LVRMSAASNLSVSFSSE*
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mRNA from alignment at P-littoralis_Contig211:200060..201676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.63.1 ID=mRNA_P-littoralis_Contig211.63.1|Name=mRNA_P-littoralis_Contig211.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1617bp|location=Sequence derived from alignment at P-littoralis_Contig211:200060..201676+ (Pylaiella littoralis U1_48)
CACCCCACTGAACCCACGACCATCGTCGAGGGTCAGGCAGAGGTGAGAGC
TGTCAGACGTGTCGAAGTAGCGCTCGCATGGAATCGTGAGGTAATCGATT
GCTCATCCGTATGACACGGCAGTCGTAAGTGCGCGCTCTGAAAATGCTCT
CATTGTTTCATACCAAGGGGTTGAAATTCCCAGTCCAGTTCGAAACTTCT
TTCCTCCCCCTTGATTCTAAATGGAACTGCACTTCTAAATCCAGCCCGAG
TAGGACAGCAGTACTCGCATCATAGCAGTGCAGCAATCGAACAGGCCGAT
TCACGGAAAAACTCCAACTGCTGTAGTCAACATTATGCAAGCATGTTTAC
GGGCCCTTTCGTGCACAGCAGTTTCATACGGTCGAGGTTTTTtcTTTTTT
TCTTCCTTCGATGTACTTCGAAATGTATATTCGGAGTATAAACGTATTTC
GGGACTAACCTCGTCACCTGAGACCCCGGATACCAGGTGAAACAATTAAA
GAAGAAATTAAACTAGACAGCATTACGAAGTGTTTCAAGAGACAGAATAT
GCATGCAAAATTCCCACAAATATCTGGGCGAACTCGCAAAAATTGCGCGA
TAAAAGGCGCGTCAGTAAAACCCTAACCCTAATATGCCACGATTTACTTG
AATTTGAACTGAATCGGGTCTTTTGGATTGTATCACGAAGACACGCTCCT
TGTACCCAAAAGAGAGACCTGCGTGTTCGAAAATATGATACGAAGTACAC
TTCGTACATCCTTTGTTCATTGTGTATGGAATTTAGTGTTGAAAGCCTGA
TTTCGTTTTGTGGAGGGGGTGATAAGTATATGACGTCATTCCGTGAAAAA
GGTGAAAAACACTCACAACCGCCCCTAGCGCCACCACTAGAGAGCCTTCA
ACAAAAATACGAGAATGTCACGACCTTCCCTTATTGACGGCTCCACTATG
GTAGGAGCTTTGGGTATTTCGGGGTTTTATTGCGTCATGTGTTGTTGTCA
CACAGGAGGAAGATCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGTT
GATTTTTTCTCACATTAGCTCACTAACAGCATAGCCGCTTTCAAAGTAGC
AAAGGAACACATTcacCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTG
GTTAACGAggggaccACTAGTCCACCGGGGCGACCATGTATCAAATGTTG
ACTATATTTGGGGTTTCTTCCGTGAACCAGCCTGTATGGTCATTGCGGTG
TAGTACAAATTGCGTTTTTTTGTGTACACTCGGTCTATCTCTCACATGCT
ACCTTTTTGTGTGTAGGGATCATACAGAACCACACGTGTCCCCTTCCTCC
TCTGCTGCCGCTTCTCGTGTCACTTTGGTGGAGACTTAAGACTCCCAGTT
CATTCGCTGCTGCCTTATACTGCTGTATCCGATCGACATGCGCCTGTCCC
ACCAGGCCGCTTTCCAAGAATCCTCTGTCTCAGGCGACAAGCCCGCCGAG
GCTTTCATGAAGAGCATTATATCCGTCCAGAACGCGTGGAATAAGAGCCT
CATCCACGATGTATTGGTTCGGATGTCCGCAGCATCCAATCTGAGCGTGA
GTTTTTCGTCTGAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:200060..201676+

>mRNA_P-littoralis_Contig211.63.1 ID=mRNA_P-littoralis_Contig211.63.1|Name=mRNA_P-littoralis_Contig211.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig211:200060..201676+ (Pylaiella littoralis U1_48)
CACCCCACTGAACCCACGACCATCGTCGAGGGTCAGGCAGAGGCCGCTTT
CCAAGAATCCTCTGTCTCAGGCGACAAGCCCGCCGAGGCTTTCATGAAGA
GCATTATATCCGTCCAGAACGCGTGGAATAAGAGCCTCATCCACGATGTA
TTGGTTCGGATGTCCGCAGCATCCAATCTGAGCGTGAGTTTTTCGTCTGA
ATGA
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