mRNA_P-littoralis_Contig210.67.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 541 bits (1393), Expect = 1.070e-168 Identity = 326/537 (60.71%), Postives = 360/537 (67.04%), Query Frame = 3
Query: 1065 PPLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGS------------VVPSVTDVTIDDDPSVYHKIPTGLLLAGCPRGSREDTPVGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANRLRGYGGQASPAALAALRDAVESAVSDNVGVSTSTVDVFVRENLFPTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHELPFLSLEELSRRNVCRFASTGRYIEVAAVENALARLDKLYASTSGGDPGMLALAAGFEMNPSGGVHAQASSLSRSRRPSSPRXXXXXXXXXXXXXXXXXDRAAWVGRG--------RGHVGEVPEEGNPVAYRSGAAAGVGAAAGA------PPPTAARPLPS-GHIRFASMNGADQRRYDGTAAAPLGLAQGWTPRGGSDGGARGTPTGASSSRRWDYSDSGXXXXXXXXXVPPTVMFGNEWGRKRAWRRTGYNDDDIDPTLSSCFFRTPANSTGELRRNDLGEGVGADLEEMELVRRIKSFRERR 2594
P LL+TIGPQCAGKTSLLR LAAKS+ A V SV DVTIDD PSVYHKIPT LLL GC RG ED + R SLSDRLG+PGCVETRLVA RL+G++SAEEFA RL GQASPAA+AAL AVESAVSDN +ST TVDVFVRENLFP A+S+S+ERLA AA + GLVAWGNTNTQARDY ALEQA+ TGRPVRFLRWGHELP LSLEELSRRNVCRFA TGRY+E AA+ENALAR+DKLYAST+GGDP LALAAGF+M+ SG VH+Q S R S D +A G G RG G G + A+G A PPP ARP+P+ G RF GAD+RRY+ T A PLGLAQ WTPRGG+ G SSRR D+SD+G VPPTVMFGNEWGRKR WRRTGY DDDIDP + SCFFRTPANSTG LRR+DLGEG GADLEEMELVRRIKS R+RR
Sbjct: 284 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGRVHSQPSPPRRRGNGS-----WEKNTRRRVGGGGRADTSAHSGGGIGSSEGVVRGRDGAWDNRGGSETWFHDQASGRTMRREATSHSVPPPPPMARPIPAAGPDRFTL--GADRRRYEYTGA-PLGLAQEWTPRGGTGAG--------GSSRRRDHSDTGGGAGGPEG-VPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQRR 803
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 524 bits (1349), Expect = 1.270e-166 Identity = 315/536 (58.77%), Postives = 356/536 (66.42%), Query Frame = 3
Query: 1065 PPLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGSVVPSVTDVTIDDDPSVYHKIPTGLLLAGCPRGSREDTPVGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANRLRGYGGQASPAALAALRDAVESAVSDNVGVSTSTVDVFVRENLFPTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHELPFLSLEELSRRNVCRFASTGRYIEVAAVENALARLDKLYASTSGGDPGMLALAAGFEMNPSGGVHAQASSLSRSRRPSSPRXXXXXXXXXXXXXXXXX-------DRAAWVGRG--------RGHVGEVPEEGNPVAY-----------RSGAAAGVGAAAGAPPPTAARPLPSGHIRFASMNGADQRRYDGTAAAPLGLAQGWTPRGGSDGGARGTPTGASSSRRWDYSDSGXXXXXXXXXVPPTVMFGNEWGRKRAWRRTGYNDDDIDPTLSSCFFRTPANSTGELRRNDLGEGVGADLEEMELVRRIKSFRERR 2594
P LL+TIGPQCAGKTSLLR LAAKS+V YHKIPT LLL GC RGS ED + + LSDRLG+PGCVETRLV RL+G++SAEEFA RL GQASPAA+AAL AVESAVSDNV +ST TVDVFVRENLFP A+S+S+ERLA AA+ ++GLVAWGNTNTQARDY ALEQA+ TGRPVRFLRWGHELPFLSLEELSRRNVCRFA TGRY+E AA+ENALAR+DKLYAST+GGDP LALAAGF+M+ SGGVH+Q+S R R SPR D +A+ G G RG G G + R + GV PT A +G RF ++ GAD+RRY+ T A PLGLAQ WTPRGG+ G SSRR D+SD+G VPPTVMFGNEWGRKR WRRTGY DDDIDP + SCFFRTPANSTG LRR+DLGEG+GADLEEMELVRRIKSFR+RR
Sbjct: 14 PALLVTIGPQCAGKTSLLRALAAKSEV--------------------------------YHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRR--RHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPA----AGPDRF-TIEGADRRRYEDTGA-PLGLAQEWTPRGGTGAG--------GSSRRRDHSDTGWGVGGPAG-VPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 500
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 184 bits (468), Expect = 2.840e-45 Identity = 124/298 (41.61%), Postives = 167/298 (56.04%), Query Frame = 3
Query: 1068 PLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGSVVPSVTDVTIDDDPSVYHKIPTGLLLAGCPRGSREDTPVGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANR----LRGY---GGQASPAALAALRDAVESAVSDNVGVSTSTVDVFVRENLFPTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHELPFLSLEELSRRNVCRFASTGRYIEVAAVENALARLDKLYASTSGGDPGMLALAAGFEMNPSGGVHAQASSLSR 1940
PLLITIGPQCAGKT+ L L AR + DV IDD P VY+K+PT L ++D + ++S+R+ + V LVA RL+G ++A+EF + + Y G+ +AA VE+AV+ + + T TVD+FV +P V S RL S G VAWGNTNT+++DY ALE AQ RPVR+LRWGHELP + L +L R++ RFA+TGRY+ AV AL R++ LYA T GGDP +L AAGF+M G A+ ++SR
Sbjct: 93 PLLITIGPQCAGKTTTLLALGQSLGGAR------------------ICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAA----VEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAAGFQM----GAGARVRAVSR 364
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 170 bits (431), Expect = 3.330e-41 Identity = 118/294 (40.14%), Postives = 157/294 (53.40%), Query Frame = 3
Query: 1068 PLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGSVVPSVTDVTIDDDPSVYHKIPTGLLLAGCPRGSREDTPVGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANRLRGYGGQASPAALA------ALRDAVESAVSDNVGVSTSTVDVFVRENLFPTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHELPFLSLEELSRRNVCRFASTGRYIEVAAVENALARLDKLYASTSGGDPGMLALAAGFEMNPSGGVHAQASS 1931
PLLITIGPQCAGKT+ LR + V DV ID+ P VY+++PT +L + T GR LSDRL G LVA RL+G +S+ +F + G P LA ++VE+AV++ V + TVD+F+ E P + L + G VAWGNTNT+ARDY+ AL AQ RPV F+R+GHE+P +S+ EL RN+ RFA+TGR+I + A R+ LYA T GG+P LA AAGF M+ G V A+ +S
Sbjct: 70 PLLITIGPQCAGKTTTLRKMG-------------------------VFDVAIDEHPDVYYELPTAYILDPTSTTLEDVTIFGR-RLSDRLQYTGVYANMLVAQRLEGLLSSAKFEAEWKAIAG---PYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAAGFIMDDEGRVRAEPTS 334
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: B8C738_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C738_THAPS) HSP 1 Score: 89.7 bits (221), Expect = 2.170e-14 Identity = 85/270 (31.48%), Postives = 128/270 (47.41%), Query Frame = 3
Query: 1068 PLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGSVVPSVTDVTIDDDPSVYHKIPTGLLL--AGCP---RGSREDTPVGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANRLR-----GYGGQASP------AALAALRDAVESAVSDNVGVSTST-----------------VDVFVRENLF-PTAVSASR---------------ERLAVAASSKNGL------VAWGNTNTQARDYSWALEQAQLTGRPVRFLRWG 1712
P+ IT+GPQC GKT++L+ L E +EGG +TG + D+TIDD VY +P L L A P R + + +G+ S+ DR+ +P E +LV RL G ++A +F RL G Q++P A +A L AVE + N T +D+FV E++F P + R +RL + S+ + + +AWGNTNT+ R++ A+E A L+GRPV F+ +G
Sbjct: 102 PIYITVGPQCCGKTTILKRLFGTVFHNNE----EEGGASTGGL-----DITIDDQELVYFPVPIQLFLPDAALPSEQRSTSNQSILGK-SVRDRVVDPSNNELKLVIQRLAGKLTAGDFIERLNNPQKNGQQQQSAPLQKNQKAVVADLVSAVEEVIKINTDPKGETTENSMFFAATKLTLPKQIDLFVVESIFRPRPLELMRNTKNNTPSSSALDEAQRLIKSISTDSSVHDSAAPLAWGNTNTRPREFLSAMEAATLSGRPVEFIVFG 361
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.000e-13 Identity = 90/288 (31.25%), Postives = 118/288 (40.97%), Query Frame = 3
Query: 1065 PPLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGSVVPSVTDVTIDDDPSVYHKIPTGLLLAG--------CPRGSREDTPVGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANRLRGYGGQASPA---------------------------ALAALRDAVESAVS-DNVGV----STSTVDVFVRENLFPTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFASTGRYIEVAAV 1805
P LLIT+GPQCAGKT+LL+ L S P + DV IDD +Y +P L L G S + GR +LS R + VE+RLV L G E LR ALA R + + D V + S +F+ + L P A+ S +RL + G VAWGNTN++ARD+ A+ A GR V F+RWG EL + EEL RNV R G+Y+ V +
Sbjct: 87 PSLLITVGPQCAGKTTLLKHLNESRP----------------SFAPPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGR-TLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPD-LLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTI 355
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: A0A7S2IEC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEC1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 7.740e-12 Identity = 87/329 (26.44%), Postives = 130/329 (39.51%), Query Frame = 3
Query: 1065 PPLLITIGPQCAGKTSLLRGLAAKSKVARERGGGDEGGGNTGSVVPSVTDVTIDDDPSVYHKIPTGLLLAGCPRGSREDTP--------VGRGSLSDRLGEPGCVETRLVALRLQGNVSAEEFANRL------------------------------------------------RGYGGQASPAALAALRDAVESAVSDNVGVS-----------TST-----VDVFVRENLF-------PTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHE-----------LPFLSLEELSRRNVCRFASTG 1781
PP+ ITIGPQCAGKT+LL S +P++TD+TIDD VY KIPT L P S + P +G+ SLS R+ + E RLV RL + A EF N L Y + +D + ++ ++ T+T V +F++E +F P+A+ S +L+ S++ VAWGNTNT+ R+Y AL+ A + PV F+ + + LP L+++ L +RN+ R +TG
Sbjct: 107 PPIYITIGPQCAGKTTLL------------------------STLPNLTDITIDDQEGVYIKIPTSYFLTNSPPPSPKQEPDPFLQQKILGK-SLSHRIYDESNTEMRLVLQRLHNVIDATEFENLLLKDKRMEYEALLQEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRTNNNKHTHQKRQDQIHKLQTELTTLTHLLTTLQHPTPTTTPLPNEVSLFIQEAIFRPRTPTTPSALDTSITQLSTL--SQHHPVAWGNTNTRPREYKTALQAASTSSNPVHFIMYDSQSLLLPSETELTLPKLNIQTLLQRNIKRLLTTG 408
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 9.960e-9 Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 3
Query: 1542 NLFPTAVSASRERLAVAASSKNGLVAWGNTNTQARDYSWALEQAQLTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFASTGRYIEVAAVENALARLDKLYASTSG 1853
+L P A+ S +RL+ + G VAWGNTN++ARD+ A+ A GR VRFLRWG EL + EEL RNV R G+Y+ V A+ AL R L +G
Sbjct: 102 DLLPQAIRRSYQRLSRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVLLDGRAG 205 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig210.67.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig210.67.2 >prot_P-littoralis_Contig210.67.2 ID=prot_P-littoralis_Contig210.67.2|Name=mRNA_P-littoralis_Contig210.67.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=835bp MTRASSRRTSQKQSRGRSLAARRACSSSQPHHLMYVLIAASTTVIALVMAback to top mRNA from alignment at P-littoralis_Contig210:382453..392980+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig210.67.2 ID=mRNA_P-littoralis_Contig210.67.2|Name=mRNA_P-littoralis_Contig210.67.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=10528bp|location=Sequence derived from alignment at P-littoralis_Contig210:382453..392980+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig210:382453..392980+ >mRNA_P-littoralis_Contig210.67.2 ID=mRNA_P-littoralis_Contig210.67.2|Name=mRNA_P-littoralis_Contig210.67.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2505bp|location=Sequence derived from alignment at P-littoralis_Contig210:382453..392980+ (Pylaiella littoralis U1_48)back to top |