mRNA_P-littoralis_Contig210.11.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE) HSP 1 Score: 214 bits (544), Expect = 4.470e-64 Identity = 131/257 (50.97%), Postives = 167/257 (64.98%), Query Frame = 1
Query: 91 MAGVAFAVVLAMTLMRSILVVDAV---TSPPGTSSRLTARATQAFSSRMPTGVGQGSGHASPRQRAQVGTSSTVRTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATVGYLSNSVVMIIQFVLLLAMFVKPMLLPRS-TQSGGAVYRRVIIRNIVCTTSIVLTY 849
MA A+AVVLA+T R+ LV+DAV +SP AR +A ++R G+ Q SPRQR S VR LHKRLLAMH A+ M AG AKY VS +SC T ++ T+LLYDASLVLFL+ KT+VTNGNRAL+ WE CITWWSRFY W L+T A+FL P+ E T C + E F T+G++ N+ ++IIQF LLLAMFVKP+++P+ TQSGGAVYRR+++RN+ CT +I TY
Sbjct: 1 MATAAYAVVLALTATRTALVLDAVCFRSSP-------VARIARAVTAR---GLSQVLASTSPRQRPPSAGGSRVRALHKRLLAMHFIAIANMSAGCAKYMPDVSELSCLATRRAMVATILLYDASLVLFLVGKTSVTNGNRALAIWEACITWWSRFYGWVVLTTGALFLAAQASSVPSLEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTY 247
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: D8LN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI) HSP 1 Score: 189 bits (480), Expect = 5.030e-56 Identity = 104/183 (56.83%), Postives = 127/183 (69.40%), Query Frame = 1
Query: 304 RTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATVGYLSNSVVMIIQFVLLLAMFVKPMLLPR-STQSGGAVYRRVIIRNIVCTTSIVLTY 849
RTLH+RLLAMH+ A V M AG AKY LP+S SCRV+ + ++L YDA LVLFLLAKT VTNGNR L+ WE ITWWSRF++W YL A FLG+ N E T CF+ E A G+ SN+V++ +Q+VLLLAMF+KPML+ + +TQSGGAVYRRV+IRNIVCT I Y
Sbjct: 9 RTLHRRLLAMHVIASVNMSAGAAKYMLPLSDTSCRVSHRAWIASLLFYDACLVLFLLAKTGVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLTFPGEVNSEGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAY 191
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE) HSP 1 Score: 172 bits (437), Expect = 9.230e-49 Identity = 100/193 (51.81%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 304 RTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDAS----------LVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATVGYLSNSVVMIIQFVLLLAMFVKPMLLPR-STQSGGAVYRRVIIRNIVCTTSIVLTY 849
RTLH+RLLAMH+ A V M AG AKY LP S SCRV+ + ++L YD S LVLFLLAKT+VTNGNR L+ WE ITWWSRF++W YL LG+ N E T CF+ E G+ N+V++ +Q+VLLLAMF+KPML+ +TQSGGAVYRRV+IRNIVCT I Y
Sbjct: 9 RTLHRRLLAMHVVASVNMGAGAAKYMLPPSDTSCRVSHRAWIASLLFYDVSAPQAVADGACLVLFLLAKTSVTNGNRTLTSWENGITWWSRFWAWIYLPVSGTVLGLSFPGEVNSEGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAY 201
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.580e-43 Identity = 108/263 (41.06%), Postives = 149/263 (56.65%), Query Frame = 1
Query: 94 AGVAFAVVLAMTLMRSILVVDAVTSPPGTSSRLTARATQAFSSRMPTGVGQGSGHAS---------PRQRAQVGTSSTVRTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATV-GYLSNSVVMIIQFVLLLAMFVKPMLLP-RSTQSGGAVYRRVIIRNIVCTTSIVLTY 849
A V ++ L++ L R++ +DA+ G S + A A S + P+ QG S PR R S VR LH LL H+ +V+ ++A + KY LPV+ +C T VL+ +LLYDASL+ FLLAK +VTNG+R L+ WET I W SR Y+W YL AV + R NDE T C +G N + + GY SN +IIQFVLLL +FV+P+L+ +QSG A+YRRV+I+NI CT ++V Y
Sbjct: 3 AEVILSITLSLILARTLFAMDAIRDIRGYKSVVCRAAKAAHSLQQPSSSSQGGRRPSLPSNDAVSTPRARTHSAGSPQVRFLHITLLVTHVVSVMAVVAALFKYTLPVTVENCTATHKVLVSMLLLYDASLLTFLLAKVHVTNGHRKLAWWETAIVWISRGYAWIYLPIVAVAIPYQFRGGTNDERTFCINGYNMDDDADEVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAY 265
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.340e-38 Identity = 107/266 (40.23%), Postives = 146/266 (54.89%), Query Frame = 1
Query: 94 AGVAFAVVLAMTLMRSILVVDAVTSPPGTSSRLTARATQAFSSRMPTGVGQGSGHAS---------PRQRAQVGTSSTVRTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDES---TLCFSGSNAEGGRAGFEATV-GYLSNSVVMIIQFVLLLAMFVKPMLLP-RSTQSGGAVYRRVIIRNIVCTTSIVLTY 849
A V + L++ L R++ +DA+ G S + A A S + P+ QG G S R R S VR LH LL H +V+ +A V KY LPV+ +C T VL+ +LLYDASL+ FLLAK +VTNG+R L+ WET I W SR Y+W YL AV + R NDE+ T C +G + + V GY SN ++IQFVLLL +FV+P+L+ +QSG A+YR V+I+NI CT ++V Y
Sbjct: 3 AEVILLITLSLILARTLFAIDAIRDIRGYKSVVCRAAKAAHSLQQPSSSSQGVGPPSLPPSDAVRTVRARTHSAGSPQVRFLHITLLVTHFVSVITGVAAVFKYTLPVTEANCTATHKVLVSMILLYDASLLTFLLAKVHVTNGHRKLAWWETVIVWISRGYAWIYLPIVAVVIPYQFRGGTNDEASVKTFCVNGYHMDDDTDEVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAY 268
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE) HSP 1 Score: 139 bits (350), Expect = 8.100e-37 Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 1
Query: 448 DASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATVGYLSNSVVMIIQFVLLLAMFVKPMLLPRS-TQSGGAVYRRVIIRNIVCTTSIVLTY 849
ASLVLFL+ K +VTNGNRAL+ WE CITWWSRFY W L+T A FL P+ E T C + E F +G++ N+ ++IIQF LLLA+FVKP+++P+ TQSGGAVYRR+++RN+ CT +I TY
Sbjct: 12 QASLVLFLVGKASVTNGNRALAIWEACITWWSRFYGWVVLTTGAFFLAAQASSVPSLEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTY 146
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI) HSP 1 Score: 133 bits (334), Expect = 3.190e-33 Identity = 98/271 (36.16%), Postives = 145/271 (53.51%), Query Frame = 1
Query: 91 MAGVAFAVVLAMTLMRSILVVDAVTSPPGTSSRLTARATQAFSS------RMPTGVGQGSGHASPRQRAQVGTSST-------VRTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGG----RAGFEATVGYLSNSVVMIIQFVLLLAMFVKPMLLP-RSTQSGGAVYRRVIIRNIVCTTSIVLTY 849
MA V V LA+ + ++ VVDA+ G S + A A SS R + G+ S P AQ G S++ VR LH LL H+ A++ + + V KY LPV+ +C T V +L+DASL+ FLL K +VTNG R LS WE + W R ++W YL ++F+ N+E T C +G + R + GY + ++++Q+VLLL +FV+P+++ QSGGAVYR V+IRNI CT ++V++Y
Sbjct: 14 MAEVILPVNLAVMIAKTFFVVDAIRGIRGHKSVVCRAARAANSSGLLGSQRSSSSQGRRSAPNRPPVLAQRGRSASASAGSPKVRFLHIALLLEHIVALIAIASTVLKYALPVTASNCNATHKVSTAFAILFDASLLTFLLFKVDVTNGIRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGGTNEEGTFCENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSY 284
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: A0A6H5K6Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y0_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.200e-31 Identity = 71/145 (48.97%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 304 RTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDAS------LVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATVGYLSNSVVMIIQ 720
RTLH+RLLAMH+ A V M AG AKY P+S SCRV+ + ++LLYD S LVLFLLAKT+VTNGNR L+ WE ITWWSRF++W YL A LG+ N E T CF+ E G+ SN+V++ +Q
Sbjct: 9 RTLHRRLLAMHVVASVNMSAGAAKYMFPLSDASCRVSHRAWIASLLLYDVSAPQAACLVLFLLAKTSVTNGNRTLTSWEKGITWWSRFWAWIYLPVSATVLGLRFPGEVNSEGTACFNSYGEETETREVGDVAGFASNNVLLTVQ 153
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE) HSP 1 Score: 122 bits (306), Expect = 9.860e-30 Identity = 68/193 (35.23%), Postives = 111/193 (57.51%), Query Frame = 1
Query: 286 GTSSTVRTLHKRLLAMHLTAVVCMMAGVAKYCLPVSTMSCRVTGAVLMGTVLLYDASLVLFLLAKTNVTNGNRALSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGG----RAGFEATVGYLSNSVVMIIQFVLLLAMFVKPMLLP-RSTQSGGAVYRRVIIRNIVCTTSIVLTY 849
G + R+LH L+ H+ A++ + + V KY LPV+ +C T + +L+DASL+ FLL K +VTNG R LS WE + W R ++W YL ++F+ + T C + N + R + GY + ++++Q+VLLL +FV+P+++ QSGGAVYR V++RN+ CT ++V++Y
Sbjct: 46 GVQNASRSLHVALVVEHIVALIAIASTVLKYALPVTASNCNATHKISTAFAILFDASLLTFLLFKVDVTNGMRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGANIYQGTFCENSFNRDEDVNYEREASDNAFGYAVTNAMLLVQYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSY 238
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Match: D7G2C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 3.300e-17 Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 508 LSKWETCITWWSRFYSWGYLSTCAVFLGIVVRVTPNDESTLCFSGSNAEGGRAGFEATVG-----YLSNSVVMIIQFVLLLAMFVKPMLLP-RSTQSGGAVYRRVIIRNIVCTTSIVLTY 849
L+ WE I WWSR Y W YL A+ LG + T C++G G E T + N+V++++QF+LLL +FV+PML+ QSGGAVYRRV++RN+ CT IV++Y
Sbjct: 2 LAWWEKAIRWWSRLYGWVYLPLMALMLGTRFPGGTDPAGTFCYNGIVPTGAS---ELTTSNNAQSFGINNVLLVVQFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISY 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig210.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig210.11.1 >prot_P-littoralis_Contig210.11.1 ID=prot_P-littoralis_Contig210.11.1|Name=mRNA_P-littoralis_Contig210.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=283bp CDIRATLSGESCLGPLVTSTVGPERPAVVEMAGVAFAVVLAMTLMRSILVback to top mRNA from alignment at P-littoralis_Contig210:26607..38672+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig210.11.1 ID=mRNA_P-littoralis_Contig210.11.1|Name=mRNA_P-littoralis_Contig210.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=12066bp|location=Sequence derived from alignment at P-littoralis_Contig210:26607..38672+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig210:26607..38672+ >mRNA_P-littoralis_Contig210.11.1 ID=mRNA_P-littoralis_Contig210.11.1|Name=mRNA_P-littoralis_Contig210.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=849bp|location=Sequence derived from alignment at P-littoralis_Contig210:26607..38672+ (Pylaiella littoralis U1_48)back to top |