mRNA_P-littoralis_Contig210.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig210.8.1
Unique NamemRNA_P-littoralis_Contig210.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig210.8.1 vs. uniprot
Match: D7G1C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.890e-22
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 2 
Query:  173 GRTTTASSRTAQEPGAATAKPSRTQPSLAVTSSA*KRRLCWDGKTAVSKDINTGCTDKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCAAVPAALKDF*GRLHK-RGVDSSRHPD 586
            G T+T   RTA E    T   SRT PS A  +SA      +D +   + D+++GCT  I  G+LVVKDW +PPLHL+C+KREWRK +   +++K+  +DL +T ++EAAQP A VPA L  F  R    +G   S  P+
Sbjct:   23 GTTSTGCFRTAPEQRPRTVNASRTPPSPARNTSA------YDPEQPAAIDLDSGCTGVIADGDLVVKDWDEPPLHLLCAKREWRKTVISILRKKQQLRDLDSTEKQEAAQPSAEVPANLVFFLQRCSSYQGKTLSNSPE 155
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BLAST of mRNA_P-littoralis_Contig210.8.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.410e-19
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    4 CDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSRDGKTFKNATVASGDIVG 273
            CDQ    D  TC+V+ S+L A    P  CQLCL  VGG PS+G+ + EK+ +G   W N H  ++ C GA++ DG+ +KNAT+A+GDIVG
Sbjct:   54 CDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSDGEKYKNATLATGDIVG 143
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BLAST of mRNA_P-littoralis_Contig210.8.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.140e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    4 CDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSRDGKTFKNATVASGDIVG 273
            CDQ   +D +TC+V+ S L     +P  C+LCL  VGG PS+G+ + EK D+G   W N H V+  CAGA + DG  +KNAT+A+G+IVG
Sbjct:   54 CDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGRGEWLNIHAVWKLCAGATTSDGGKYKNATLATGEIVG 143
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BLAST of mRNA_P-littoralis_Contig210.8.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 9.630e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 TCDQNVWSDKDTCKVTLSMLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTV 171
            TCDQN+W D+ +CKV+LS+L  S+DHPH C LCL DVGG PS+G  T E D RGY+ 
Sbjct:  683 TCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSRGYSA 739
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BLAST of mRNA_P-littoralis_Contig210.8.1 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.690e-12
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  290 CWDGKTAVSKDINTGCTDKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCA 511
            C D +T V +DI  G T  ++ G  VVK W DPPL L C+KR WR  +D  +  K++ +D+GTT EKE+AQP A
Sbjct:   55 CSDPETNV-EDITDGYTGYMEEGAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSA 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig210.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1C6_ECTSI2.890e-2243.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXZ5_9PHAE6.410e-1947.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE1.140e-1747.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Z8_ECTSI9.630e-1561.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6X3_9PHAE3.690e-1248.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig210contigP-littoralis_Contig210:19766..22896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size900
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.98e-07
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size531
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig210.8.1prot_P-littoralis_Contig210.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig210 20454..22581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.3464546-UTR-P-littoralis_Contig210:19765..198071680790028.3464546-UTR-P-littoralis_Contig210:19765..19807Pylaiella littoralis U1_48UTRP-littoralis_Contig210 19766..19807 +
1680790028.3617444-UTR-P-littoralis_Contig210:20441..204531680790028.3617444-UTR-P-littoralis_Contig210:20441..20453Pylaiella littoralis U1_48UTRP-littoralis_Contig210 20442..20453 +
1680790028.4165661-UTR-P-littoralis_Contig210:22581..228961680790028.4165661-UTR-P-littoralis_Contig210:22581..22896Pylaiella littoralis U1_48UTRP-littoralis_Contig210 22582..22896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.3750458-CDS-P-littoralis_Contig210:20453..205681680790028.3750458-CDS-P-littoralis_Contig210:20453..20568Pylaiella littoralis U1_48CDSP-littoralis_Contig210 20454..20568 +
1680790028.3851717-CDS-P-littoralis_Contig210:20781..208891680790028.3851717-CDS-P-littoralis_Contig210:20781..20889Pylaiella littoralis U1_48CDSP-littoralis_Contig210 20782..20889 +
1680790028.3966928-CDS-P-littoralis_Contig210:21413..216781680790028.3966928-CDS-P-littoralis_Contig210:21413..21678Pylaiella littoralis U1_48CDSP-littoralis_Contig210 21414..21678 +
1680790028.4066563-CDS-P-littoralis_Contig210:22538..225811680790028.4066563-CDS-P-littoralis_Contig210:22538..22581Pylaiella littoralis U1_48CDSP-littoralis_Contig210 22539..22581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig210.8.1

>prot_P-littoralis_Contig210.8.1 ID=prot_P-littoralis_Contig210.8.1|Name=mRNA_P-littoralis_Contig210.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MLLASKDHPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHC
AGARSRDGKTFKNATVASGDIVGVKEAPVLGRKDRRLQGHQHWVHRQDQG
RGARGQGLGGPPPAPRLLQARVEEGYRPPRSAEEGLPGPRHHTREGSGPA
LRCRPGGSQGLLRATPQARSRLLATP*
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mRNA from alignment at P-littoralis_Contig210:19766..22896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig210.8.1 ID=mRNA_P-littoralis_Contig210.8.1|Name=mRNA_P-littoralis_Contig210.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3131bp|location=Sequence derived from alignment at P-littoralis_Contig210:19766..22896+ (Pylaiella littoralis U1_48)
ACCTGCGACCAAAACGTGTGGAGCGACAAGGACACGTGCAAGGTATAACT
ACGGTTGTATTGGAAACGTGATCTGTGATTACCTTTTGCCCTCATTATCG
TGATTGTGCTCTTCGATCACCCTCACGAATTTTGTATTGTTTGCACCCAC
CCGTGTCCTGTGTGTGCTGCTGTGTTTGATTTTGCAGTCTCCCCGAGCAC
CACCGCCACCAGCACCTTTCCCATGAATCTGTTGCTCGTTTGTTTGAGTG
CTGCAGACCGTGTGTTGCCGGTAACAATGTGTTCCGTGGATTGCACGTGC
TTTACCACATGTTTGTTAGACTCATATTGCGAGCTCACTTTTTTTTCATG
CCTCGCACAATTTTTCAAGGTCGCGCTGTACCGCTACCAGTACCTTTCCC
ATGAATCTAATGCTTTTTTTTTTATGCCTCGCACATTTTTTCAAGGTCAC
GCTGTACCGCCACCAGCACCTTTCCCATGAATCTGTTGCTCGCTTGTTGT
GCTGCAGATCGTGTGTTGCCGGTAACAATGAGGTGTCCGTCGATTGCATG
TGCTTTCTGTGACCGTGCCTCTTTCATGACCCTCACGGATGTTGTGATTT
TTGCATCTACTCTGTTCCTCCCTCTTTCAACATTTTCAGCACTTCGCTTT
TTTTTTCATGTCTCGCACATTTCAAGGTCACGCTGTCCATGCTGCTCGCC
AGCAAGGATCACCCGCACGGCTGCCAGCTGTGCCTGTGTGACGTCGGGGG
CTACCCTTCCATTGGTATCCCCACAGACGAGAAGGACGACCGTGGCTACA
CCGGTGAGAGATTGTTTCGTCCCGTTTTTCCATCGAGGTCACGCTGTACT
GCCACCAGCACCTTTCCCATGAATCTGTTGCTATTTTTTTCATGCCTCGC
ACAATTTTTCAAGGTCACGCTGTACCGCCACCAGCACCTTTCCCATAAAT
CTGTTGCTATTTTTTTCATGCTGCTTTTCTCGTGTTTGTCCTGTTCGGTA
CACATATTTTTGGCAGTGTGGGAGAACTACCACGGCGTCTTCTCGCACTG
CGCAGGAGCCAGGAGCCGCGACGGCAAAACCTTCAAGAACGCAACCGTCG
CTAGCGGTGACATCGTCGGCGTAAGTTGAACGGTTGTGTGTCATGTCCGC
CATGATGACCGTCGTACATGCTGTTTTTTGTCATGTGTGATGAAGAGACC
TGCCCCCGTCTGTTTTTCCATTTTCTTTTTATATGCTGCTTTTACACATG
TAGTTAAAAAGAAGAAAGATCCGACCCCGTATATTATTTTTAAAGTAATT
ACGTATGCCGTTACACTGCTGTACCTCTCTTCTTCCTCCCGCTCTCCATT
TATTTCCCTCACCGTCGTTGACGGTGACATCGGCGTTAGTTGTACGGTTG
CATGTTATCTCCGACATCATGACCGTCGTGCTGTTTTTCTGTCGCGTGAT
GAAGAAGACCTGCCCCCGTCTATTTTTCCGTTTTCTTTTTATATGCCGTT
TTTATCCCATGTCGTTCACAAGAGCCGCCCCAGTCTATTTCTGTTATCAT
AATTACGTGCGCCAGAACTCTGTACCTCTCTCTCCCTCCCCCTTCGCCCT
TCCCCCCCGCTCTCCCTTTATTTCCCTTCCTCAATCCGAAAATAACAGAA
GAGGCGCCTGTGCTGGGACGGAAAGACCGCCGTCTCCAAGGACATCAACA
CTGGGTGCACCGACAAGATCAAGGCCGGGGAGCTCGTGGTCAAGGACTGG
GTGGACCCCCCCCTGCACCTCGTCTGCTCCAAGCGCGAGTGGAGGAAGGC
TATCGACCACCACGTTCAGCAGAAGAAGGACTTCCAGGACCTCGGCACCA
CACCCGAGAAGGAAGCGGCCCAGCCCTGCGCTGCCGTCCCGGCGGCTCTC
AAGGACTTCTGAGGTACGATCTGTATCTGATTATACCGGGCTAACGCCTC
CCTCAAACATACAACGAAACCTCAAAATAACTTAATGGAACTTGATCTAT
CGAGCAGCGATTCGGAAACTGACGTCATAGTGCCAAATGACGCTGCAGCT
CAGCGTAGAAGCAGGCGCGCAGCTTTAATAGCAGATCGACGATCCAGAGG
TGAAATTCGAAACATACATCAAATCCGCAACAATGCATGTCATCGCAGAA
GCAGGCGCGCTGCTATTATCGCCGCACGTCGCGCATCCGGTCAAATTCGC
ATTCACGCCGCCAACGATACATCACCACGATCTCTCCCTCCTTCCCCTAA
TCCTCCACCGCCTACTTTACCTCCTCTACCACCACAACCTGTATGGACTG
TTCAGCATGAGATTGGTGACGGAGCTTGCGGCTTTCGAGCAATTGCTAGA
CGTTTCCTCGGTGATCCTGAGTTGCACTTACAAGCACGACATCAAATTGT
ACTGTACCTTGCACACAACAGTCAGGACGACAACCTACACATCCACGACG
GCATTAACACAGAACTTCTTTACTGTTCAGGTTCACCGCCCTCTACATAC
TCCTCTTACGACGACTACCTCTCAAGAATGTCCATGCCTACCACGTACAT
GGGCCAACCCGAAATTACTGCTGCCATCGCAGTCTATGGAACCCCTATGA
TTCCACACTTCCAAAGTTCAACCTTACCGCACCCAGCCATCGCTGATCTC
AATGAACTTCACTTAAGGTTCACATCTGCCTCACGTCATTACGACACCTT
CACCCTATCAAACCCTGCCGCTCACTCCTAACATGACCCGTTACGATTCA
ACGGTCCACTATTTCCTGTTCAGGGCGACTCCACAAGCGCGGAGTCGACT
CCTCGCGACACCCTGATGACGGTCTCACGGTGTGCTGAAAGGGTCGGGCA
ACTTCGGGGCTGTGTCGTTCTGTACCTGGAACTACCTGCTTGCCCATAGA
TACAACCACCAGGCGTGCCGCACGACGTCTTCGTGGACTATATTTTGGTC
AACACACCCATCGCATTTTGAGCGATGATTCTTTATTCGTCGGTATCAAT
GCCGTACGCTGGGAACTTCCGGTTACCTCTTACAGTAGTTCTGCCTTAGA
CGTACCTTTGCCTCGTTACTACTTGGTAACATTTCGTTAGAGTGTTTCCG
TTTCCTTGGCGCCTTCTGTCGCCCAACTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig210:19766..22896+

>mRNA_P-littoralis_Contig210.8.1 ID=mRNA_P-littoralis_Contig210.8.1|Name=mRNA_P-littoralis_Contig210.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig210:19766..22896+ (Pylaiella littoralis U1_48)
ATGCTGCTCGCCAGCAAGGATCACCCGCACGGCTGCCAGCTGTGCCTGTG
TGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGAAGGACG
ACCGTGGCTACACCGTGTGGGAGAACTACCACGGCGTCTTCTCGCACTGC
GCAGGAGCCAGGAGCCGCGACGGCAAAACCTTCAAGAACGCAACCGTCGC
TAGCGGTGACATCGTCGGCGTAAAAGAGGCGCCTGTGCTGGGACGGAAAG
ACCGCCGTCTCCAAGGACATCAACACTGGGTGCACCGACAAGATCAAGGC
CGGGGAGCTCGTGGTCAAGGACTGGGTGGACCCCCCCCTGCACCTCGTCT
GCTCCAAGCGCGAGTGGAGGAAGGCTATCGACCACCACGTTCAGCAGAAG
AAGGACTTCCAGGACCTCGGCACCACACCCGAGAAGGAAGCGGCCCAGCC
CTGCGCTGCCGTCCCGGCGGCTCTCAAGGACTTCTGAGGGCGACTCCACA
AGCGCGGAGTCGACTCCTCGCGACACCCTGA
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