mRNA_P-littoralis_Contig21.213.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.213.1
Unique NamemRNA_P-littoralis_Contig21.213.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A6H5LD10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD10_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 3.160e-139
Identity = 227/327 (69.42%), Postives = 260/327 (79.51%), Query Frame = 1 
Query:    4 VVHPTDIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPPRQLFTGCISGWGNFIMVLPLLPFVFAGAVIAGVVYILTLPSRIFAAVSRKCRSWKRRVTMPNRPTSGNSASNXXXXXXXXXXXXXXXXXXXAGVGEGG----------DPCSLESGTIGTA 954
            V+ P+DIK+L+K DKG  RKY RFLF REHK ARECPRC++LSVGDP  S EMRC  C  VFCYEHGGAH+G++CAEY+++TADET+RTMALIGR+TK CPGCQ PVEKLGGCNQMVC+HCHCSFCWICME VDRGTFPVHFQWWNVRGCPNQQLQED+ +S  GRQC K LS +QI+VVGPLALLLTVASSLACVCCLPAF+L PRQLFTGCISGWGNF+MVLPLLP V  GAV+A V+Y++ LP+R+F A+SRKC S    + +       NS          XXXXXXXXXXXXAG G+ G          DP ++ESGTIG A
Sbjct:  257 VIIPSDIKDLIKTDKGTQRKYARFLFSREHKAARECPRCANLSVGDPSASLEMRCGACGCVFCYEHGGAHQGKTCAEYVDATADETNRTMALIGRMTKPCPGCQTPVEKLGGCNQMVCMHCHCSFCWICMEHVDRGTFPVHFQWWNVRGCPNQQLQEDSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLSPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFRAISRKCSSRTTSLDLTASRRPNNSRDARSGSRKRXXXXXXXXXXXXAGRGDTGQEGEAXXXXXDPNAIESGTIGAA 583
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: D7FNI4_ECTSI (Predicted E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI4_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 4.460e-139
Identity = 228/321 (71.03%), Postives = 258/321 (80.37%), Query Frame = 1 
Query:    4 VVHPTDIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPPRQLFTGCISGWGNFIMVLPLLPFVFAGAVIAGVVYILTLPSRIFAAVSRKCRSWKRRVTMPNRPTSGNSASNXXXXXXXXXXXXXXXXXXXAGVGEGG----DPCSLESGTIGTA 954
            V+ P+DIK L+K D    RKY RFLF REHKTARECPRC++LSVGDP  S EMRC  C  VFCYEHGGAH+G++CAEY+E+TADET+RTMALIGR+TK CPGCQ PVEKLGGCNQMVC+HC+CSFCWICME VDRGTFPVHFQWWNVRGCPNQQLQED+ +S  GRQC K LS +QI+VVGPLALLLT ASSLACVCCLPAF+LPPRQLFTGCISGWGNF+MVLPLLP V  GAV+A V+Y++ LP+R+F  VSRKC S    + +    TS NS       XXXXXXXXXXXXXX    GE      DP ++ESGTIG A
Sbjct:  117 VIRPSDIKVLIKTDATTQRKYARFLFSREHKTARECPRCANLSVGDPSVSLEMRCGECGYVFCYEHGGAHQGKTCAEYVEATADETNRTMALIGRITKPCPGCQTPVEKLGGCNQMVCMHCNCSFCWICMEPVDRGTFPVHFQWWNVRGCPNQQLQEDSHQSPRGRQCHKLLSAVQIVVVGPLALLLTAASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKVVSRKCSSRTTSLDLTAPRTSSNSHDARSGSXXXXXXXXXXXXXXTGREGEAXXXXXDPSAIESGTIGAA 437
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A836CCT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT7_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.080e-55
Identity = 101/228 (44.30%), Postives = 135/228 (59.21%), Query Frame = 1 
Query:   19 DIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAH-EGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPPRQLFTGCISGWGNFIMVLPLLPFVFA 699
            DI ELL  +     KY  F   +E+  AR C +CS  + GDP   S M C  C   +C+EHG AH    +CA Y  S A+E+ +  AL+   T+ CPGC + +EK GGCNQM C +C   FCW+C+ +VD G  P HF+WWNV GCPNQQ+QEDA+     R CL+ LS++Q++++GP                LP F   P ++F+GC+SGWG  +M L LLPFV A
Sbjct:  176 DIYELLSTEPVTLAKYQWFKLSKENSNARSCSKCSEAAFGDPQNPS-MTCPRCGHRYCFEHGDAHGPATTCAAYELSMAEESKKNRALLSETTRPCPGCASAIEKAGGCNQMKCYNCGTHFCWLCLRKVDGGALPRHFEWWNVTGCPNQQMQEDAQPGRRSRVCLRVLSLIQVVIIGPXXXXXXXXXXXXXXXXLPLFGQGPVEVFSGCMSGWGYVVMALLLLPFVIA 402
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: K8Z7H4_NANGC (Ring-finger-containing e3 ubiquitin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7H4_NANGC)

HSP 1 Score: 187 bits (476), Expect = 1.060e-48
Identity = 101/220 (45.91%), Postives = 124/220 (56.36%), Query Frame = 1 
Query:   61 KYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNV-RGCPNQQLQEDAERSEGGR-QCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPP---------------RQL---FTGCISGWGN 660
            KY RF F + H+ AR CP C S  +GD      M CS C   FCY H  AH  +SC EY + T +ET R  A+I  + K CPGC  PVEK GGCNQM C+ C  ++CW+C + VD GTFP HFQWWNV  GCPN Q+QED E       + +K LS+LQ+I +GP A ++     +AC  C   FK                  RQL   +TGCIS WGN
Sbjct:  170 KYERFKFQKAHRNARMCPFCDSAELGD-AEQPAMTCSKCGKQFCYFHASAHPNKSCTEYEQLTHEETLRNQAMISTIAKPCPGCGNPVEKSGGCNQMACVWCGQNWCWLCGKLVDNGTFPDHFQWWNVIGGCPNMQMQEDLEPPPPSHIRLVKFLSILQLIFIGPAAFVIGTGLYIACFPCF-LFKCVGVIGQGDDERENEEGGRQLRAHYTGCISFWGN 387
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: W7UAK3_9STRA (Ring-finger-containing e3 ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAK3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 8.420e-48
Identity = 104/230 (45.22%), Postives = 130/230 (56.52%), Query Frame = 1 
Query:   61 KYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNV-RGCPNQQLQEDAERSEGGR-QCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPP---------------RQL---FTGCISGWGNFIMVLPLLPF 690
            KY RF F + H+ AR CP C S  +GD      M CS C   FCY H  AH  +SC EY + T +ET R  A+I  + K CPGC  PVEK GGCNQM C+ C  ++CW+C + VD GTFP HFQWWNV  GCPN Q+QED E       + +K LS+LQ+I +GP A ++     +AC  C   FK                  RQL   +TGCIS WGN ++   L+PF
Sbjct:  300 KYERFKFQKAHRNARMCPFCDSAELGD-AEQPAMTCSKCGKQFCYFHASAHPNKSCTEYEQLTHEETLRNQAMISTIAKPCPGCGNPVEKSGGCNQMACVWCGQNWCWLCGKLVDNGTFPDHFQWWNVIGGCPNMQMQEDLEPPPPSHIRLVKFLSILQLIFIGPAAFVIGTGLYIACFPCF-LFKCVGVIGQGDDERENEEGGRQLRAHYTGCISFWGNTLVAFLLIPF 527
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A6G0WWH6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWH6_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.290e-46
Identity = 97/239 (40.59%), Postives = 129/239 (53.97%), Query Frame = 1 
Query:   19 DIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALS-----VLQIIVVGPLALLLTVASSLACVCCLPAF---KLPPRQLFTGC--ISGWGNF-----IMVLPLLPF 690
            DI+ L  D      KY +F FF+E+  ARECP C  + VG       + C+ C+  FC+ H  AH G SCAEY  +   E     A+I +++K CPGCQ PVEK GGCNQM C+ C  +FCW+C ++VD G FP HFQWWN+ GC   Q+   +E S G       L+     +   +V GP AL LT+A S    CC+P     +   R  F GC  +SGW        +++LP  PF
Sbjct:  197 DIRALASD--ATWEKYEKFKFFKENAAARECPYCHHVQVGSGTEDPMINCAACSQEFCFTHSNAHPGTSCAEYEAARRAEEKLNQAMISQISKPCPGCQTPVEKSGGCNQMKCITCGVNFCWLCGKEVDSGVFPEHFQWWNLAGCAGSQM---SESSTGKPSLFFKLTWFLFRLFLCLVFGPPALALTLAFSAVACCCIPCLNNSRETARSAFLGCFCVSGWVFMAPVVLVLLLPFAPF 430
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A5D6XX39_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX39_9STRA)

HSP 1 Score: 180 bits (456), Expect = 4.510e-45
Identity = 95/238 (39.92%), Postives = 127/238 (53.36%), Query Frame = 1 
Query:    7 VHPTDIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKL---PPRQLFTGCISGWGNFIMVLPLLPFVFAGAVI 711
            + P DI+ ++  +     KY +F F +EH+ AR+CP C    +       E  C  C   FC+ H  AH GRSCAEY +          A+I  ++K CPGC   VEK+GGCNQM C+ C  SFCWIC E +D   FP HFQWWN+RGCP  Q+ E  E+S+     +  L  L ++V GP AL+L VA SL C    P  K+     R  FT C+   G  ++     PFV A  ++
Sbjct:  204 IAPEDIQAVVAPEDWS--KYLKFKFNKEHENARQCPHCDHSQLCRGRAEPECVCERCGGDFCFVHSTAHRGRSCAEYEKKIVAIEKLNHAMINEISKPCPGCNNFVEKIGGCNQMKCVVCSTSFCWICREIIDDSVFPEHFQWWNIRGCPGNQMAEVEEQSKSQTAAMVLLRGLFLLVFGPPALVLAVAFSLLCXXXTPCAKIFDTTHRNAFTTCLCASGYLLLA----PFVLAALLV 435
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A7S1B5E8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5E8_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.590e-45
Identity = 98/235 (41.70%), Postives = 130/235 (55.32%), Query Frame = 1 
Query:   19 DIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLT--SSEMRCS----------GCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPPRQLFTGCISGWGNFIMVLPLLP 687
            DIKE LK D    +KY R+ + +E+ +AR CP C + +    ++   S M+C            C   FCY H GAH G++CA+Y +  A ET      I    KKCP C   V+KL GCNQM C  C+ +FCW+C+  VD GTFPVHFQWWN+RGCPN QL E  E S+      KA+SV+QI+VVG  + +L V + L   C   +     +       S WGN + V+ LLP
Sbjct:  357 DIKECLKKDSKTLKKYHRYKYDKENPSARRCPDCDAPNSFKMISVKKSSMKCKVPKNPICFCENCDREFCYYHAGAHVGKTCAQYEKEIAGETDLNENYINTFAKKCPECGVLVQKLEGCNQMKCSVCNTNFCWLCLTIVDDGTFPVHFQWWNIRGCPNMQLNESIEPSKTELFLSKAMSVMQIVVVGVPSAILAVGTFLPLYCVFHSIGSSFQDRALNFFSLWGNILTVVLLLP 591
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A485LI31_9STRA (Aste57867_21164 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI31_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.940e-44
Identity = 90/224 (40.18%), Postives = 119/224 (53.12%), Query Frame = 1 
Query:   61 KYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAF---KLPPRQLFTGC--ISGWGNF-----IMVLPLLPFVFAG 702
            KY +F F +EH  ARECP C  + VG    +  M C  C   FC+ H  AH G +CA Y ++   E     A I ++ K CPGCQ PVEK GGCNQM C+ C  +FCW+C ++VD G FP HFQWWN+ GC   Q+ E    S   +       ++  +V  P AL LT+  S+   CC+P F   +   R  F GC  +SGW        ++ LP +PF   G
Sbjct:  231 KYEKFKFSKEHTGARECPFCHVVQVGGGAENPAMTCVHCGHEFCFSHSNAHMGSTCAAYEKARRAEEKLNQAKISQIAKPCPGCQTPVEKSGGCNQMKCITCGVNFCWLCGQEVDGGVFPEHFQWWNLAGCAGAQMSESTTPSLLAKVTWFCFRLVLCLVFAPPALALTLVCSIVSCCCIPCFANGRGTARSAFLGCFCVSGWVFMAPIVLVLALPFVPFYLMG 454
[Close]
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Match: A0A3M6VKQ5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKQ5_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.060e-43
Identity = 99/265 (37.36%), Postives = 143/265 (53.96%), Query Frame = 1 
Query:   19 DIKELLKDDKGMSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEHGGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQMVCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGRQCLKALSVLQIIVVGPLALLLTVASSLACVC---CLPAFKLPPRQLFTGCISGWGNFIMVLPL---LPFVFAGAVI----AGVVYILTLPSRIFAAVSRKCRSW 783
            DI+ L+ ++  + +KY++F F +EH+ AR+CP C    +       E  C  C   FC+ H  AH+GR+CAEY +          ALI +++K CPGCQ  VEK GGCNQM C+ C  SFCWIC++ +D   FP HFQWWNVRGC   Q+ +   +  G +    AL VL  ++ GP A +L V   + C C   C    +L  RQ FT C    G ++++ P+   L  V  G VI    AGV  ++ +   +   +  +C +W
Sbjct:  315 DIRSLVSEE--VWQKYSKFKFNKEHELARQCPYCDHSQLCAGSEYPECTCEACNGEFCFVHSSAHQGRTCAEYDKKMIAVEKLNNALISKISKPCPGCQNNVEKTGGCNQMKCVICSTSFCWICLKIIDDSVFPEHFQWWNVRGCAGNQMVDFERQGVGQKSIGVALRVLFFVIFGPPAFVLAVVFCVLCCCFYPCTAKSRLTFRQAFTTCFCASG-YVLLAPVVLALGLVAIGVVIGGAAAGVAVLVCVSPIVGLMLLFRCDAW 576
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD10_9PHAE3.160e-13969.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNI4_ECTSI4.460e-13971.03Predicted E3 ubiquitin ligase n=1 Tax=Ectocarpus s... [more]
A0A836CCT7_9STRA3.080e-5544.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8Z7H4_NANGC1.060e-4845.91Ring-finger-containing e3 ubiquitin (Fragment) n=1... [more]
W7UAK3_9STRA8.420e-4845.22Ring-finger-containing e3 ubiquitin n=2 Tax=Monodo... [more]
A0A6G0WWH6_9STRA3.290e-4640.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6XX39_9STRA4.510e-4539.92Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1B5E8_9STRA4.590e-4541.70Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A485LI31_9STRA1.940e-4440.18Aste57867_21164 protein n=1 Tax=Aphanomyces stella... [more]
A0A3M6VKQ5_9STRA1.060e-4337.36Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:801290..806669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNI4
PFAMsIBR,zf-C3HC4,zf-RING_UBOX
Model size2709
Max annot lvl2759|Eukaryota
KEGG koko:K11975,ko:K19306
Hectar predicted targeting categorymitochondrion
Exons5
Evalue1.65e-137
EggNOG OGsKOG1815@1|root,KOG1815@2759|Eukaryota
Ec32 ortholog descriptionPredicted E3 ubiquitin ligase
Ec32 orthologEc-01_005320.1
EC2.1.1.309,2.3.2.31
Descriptionubiquitin conjugating enzyme binding
Cds size1860
COG categoryO
BRITEko00000,ko01000,ko03009,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.213.1prot_P-littoralis_Contig21.213.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 802088..806618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790026.3997266-UTR-P-littoralis_Contig21:801289..8020871680790026.3997266-UTR-P-littoralis_Contig21:801289..802087Pylaiella littoralis U1_48UTRP-littoralis_Contig21 801290..802087 -
1680790026.4747028-UTR-P-littoralis_Contig21:806618..8066691680790026.4747028-UTR-P-littoralis_Contig21:806618..806669Pylaiella littoralis U1_48UTRP-littoralis_Contig21 806619..806669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790026.4201584-CDS-P-littoralis_Contig21:802087..8032761680790026.4201584-CDS-P-littoralis_Contig21:802087..803276Pylaiella littoralis U1_48CDSP-littoralis_Contig21 802088..803276 -
1680790026.4327905-CDS-P-littoralis_Contig21:804186..8044761680790026.4327905-CDS-P-littoralis_Contig21:804186..804476Pylaiella littoralis U1_48CDSP-littoralis_Contig21 804187..804476 -
1680790026.4407225-CDS-P-littoralis_Contig21:804669..8048451680790026.4407225-CDS-P-littoralis_Contig21:804669..804845Pylaiella littoralis U1_48CDSP-littoralis_Contig21 804670..804845 -
1680790026.4486997-CDS-P-littoralis_Contig21:805845..8060391680790026.4486997-CDS-P-littoralis_Contig21:805845..806039Pylaiella littoralis U1_48CDSP-littoralis_Contig21 805846..806039 -
1680790026.45786-CDS-P-littoralis_Contig21:806607..8066181680790026.45786-CDS-P-littoralis_Contig21:806607..806618Pylaiella littoralis U1_48CDSP-littoralis_Contig21 806608..806618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.213.1

>prot_P-littoralis_Contig21.213.1 ID=prot_P-littoralis_Contig21.213.1|Name=mRNA_P-littoralis_Contig21.213.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=620bp
MSRKYTRFLFFREHKTARECPRCSSLSVGDPLTSSEMRCSGCAAVFCYEH
GGAHEGRSCAEYIESTADETHRTMALIGRLTKKCPGCQAPVEKLGGCNQM
VCLHCHCSFCWICMEQVDRGTFPVHFQWWNVRGCPNQQLQEDAERSEGGR
QCLKALSVLQIIVVGPLALLLTVASSLACVCCLPAFKLPPRQLFTGCISG
WGNFIMVLPLLPFVFAGAVIAGVVYILTLPSRIFAAVSRKCRSWKRRVTM
PNRPTSGNSASNSGSDGVEGGTEGSGSGSGSAGVGEGGDPCSLESGTIGT
AGIEAADADVESGSGASEFRVPVPPAATAAAEVSTATKPSAGAMSSTRGT
FAEVLGAQRGSRQMPPPLQLLPEWREEEQLQGEQRKRREEERGRDEEAEV
EKGLPCSSKLLPPERHNVGVGGCGGALGDGVVLPQSALPRDSPMSPAAPR
PFPRSSVVAVPATVKNSSSRRSEGSGGGGSGGDGETFATPPSHLGARQTG
GARLGASPLPAMVSSSSYAAGAAALSLTAGVRAAALRDDISANADCDGGD
EEHEGIRHDVSSKCSAGVGAAVNSNNTSAPAAAPFSLPVDREARTVFAAA
TAATATAGGKRNRGDCGRV*
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mRNA from alignment at P-littoralis_Contig21:801290..806669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.213.1 ID=mRNA_P-littoralis_Contig21.213.1|Name=mRNA_P-littoralis_Contig21.213.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5380bp|location=Sequence derived from alignment at P-littoralis_Contig21:801290..806669- (Pylaiella littoralis U1_48)
GTTGTGGTCCACCCGACGGATATCAAAGAACTTCTCAAGGACGACAAAGG
CATGAGTCGAAAGTGAGCAACCGGGGATAAGGGGGGAGGGAGGGGAGGGG
GGGGGGCCGTGACCCATTTTTGGAAGGCAGGGCAAACAAAACACGTACCA
GGTATAGTTCGTACGACGGTGCTACTGCTGTAGAGTGCTCTGGTGTGGGG
TATCATACATACGACGTGTGACCGCTGCGTGTTTGTCCGTGCTTACTTTT
TCGGGGAAGGATTTTATGGGTGTGACGGGCGGAGTAAAAAAAACATTGGA
CAAACCGCCGTGTACGAGTTCGAACGTGCCGCCGTGGGCGTTGGAGTGTT
TTGCTGCTTCGTACGCGCGCAGCGGGGGCAGTTTTTCCAAGTTGGCGTTT
GTGCTGATGCGCTTGTTTTTTTGTGGGAGGGAAGGGGCTGTTAAATACAC
CCTGCTTGTGTTGTTTCCCGCAGAAGAGTGCGCATCACCGCCTTCCACAG
TCCACCCACGTTGTGTTTTTCCGCCGCTCTCTCTTGCTACCATCGCACCA
ACACCAAATCCCTCCTCCAACACCCTGTAGCAACCTCCCTCTCATTTTTA
ATTCTCATTTTCTATGTTTGTGGAGAGCAGATACACGCGGTTTCTCTTTT
TTCGAGAGCACAAAACTGCGCGAGAGTGTCCGAGATGCAGCAGCCTGTCG
GTGGGGGATCCGTTGACGTCTTCGGAGATGCGGTGCAGCGGGTGCGCTGC
CGTATTCTGCTACGAGCACGGCGGGGCGCACGAGGGGAGGAGCTGCGCGG
AGTACATCGAATCCACCGCCGACGGTGGGTGTGGGTGTGGGCGCGGGCGT
GATGTGTTTTTCTATTGGCAAAGACCGCGCTAACCCGGCTGACCTAGGAA
AATGCGGCAGTTATTTTTATAGGTGTAGCGGGTAGAAAACTGAAACACTT
CCGTCAATCAACCGGGGGTCCCGCAAGAGGGACCCGGCGGTAGAGACTGG
GCAGAAAGGGGTCCCCGTGCGTGCGTGCGTGCGTGCAGTAGAATTTACAC
TTTGTCCCGAGGTTCTTCCTATCGAAGGCGTTTCACGGCCTCCGTTTGGC
CGAACGCATTTGTGCCTGAACCACATGACGCGCTGTCCTCCAGACCACCC
GCGTCTGACGACCGCGGCCGCACCGCGGTCGTGGCCACCATGGCCCTCCT
TTTGCCGGTCCTTAGGGTCAGGAACAGAGTTTAAGGTTGGGTCGGGTCGA
GCAGGCTTGTGTTTGTTTGTGTCACGGTTAAGAGTGCCGAGCCAAAGTTC
AACTTCCACCAGATCTAATGGCCCTCGAACAGAGTGTAGACAGACTTCCT
CTTCGTGTGTGTGTGTGTTTGTTTGTCTTTGTGCTGTCTTTAGTGGTTTT
CTGGGTATGGAGATGTTGTTGCTGGAGGGCGCAGTCCGTCCTGTGCGATT
GAAACGGGCTGATCTTTGTGTGCTGTCGGTGTGGATCGAGGAAACCCGGA
ATGATGGAGGAGTTTTCTGGGGACCGTGCATCCTCTGAGTAAAATCACCT
ATATTTAGCAGCAACCAGTCAAGACCGAAATCGACGCCGCCTGTGATTTC
GCCGCCGCAGGAACGAAATAAATCGAAATGGTAGAGGGAACGCCAAAATA
CTTATTTCTACTGCTGTATCAGGTCTGCGGCGCCCTTACTGTAGCCGCAA
TGGGTGTTTTCGCGGGAACCCCCCTCCCCCCTCAAAGAACGCCATGTTCA
ATATATTCCTGTCTTCCGTCCCCCCGCCCCTGCTCCGCGTTCGGCCAACG
TATGTCTGCTCACGGCGCACGAAGAAACTCACCGCACAATGGCACTAATC
GGAAGGCTGACGAAGAAGTGCCCGGGGTGTCAAGCACCGGTCGAAAAACT
CGGCGGTTGCAACCAGATGGTTTGCCTGCACTGCCATTGCAGCTTCTGCT
GGATCTGCATGGAGCAGGTCGACAGGGGAACGTTTCCGGTCCACTTTCAG
GTATGCTTCGTTTTCTTTGTCCTTGTCTTTGCCTTCCCTCCCCTTCCCTC
CCCTTGATCCCCACCTTTCAGCCAACACCCCTCATTACCATGGTCATTCA
CTGTTCCTACGCCTCCCCACCCCCCCTACGCCGGTGCCGATTTACATATG
AAATCGAATCAAATCAAATCCGATCGTGTATACCACATCACAGTGGTGGA
ATGTCCGGGGTTGTCCGAACCAGCAGCTGCAGGAAGACGCTGAGCGGTCA
GAGGGCGGCAGGCAATGCCTCAAGGCGCTGTCCGTTCTGCAGATCATCGT
GGTGGGACCTCTCGCGCTGCTGCTGACGGTGGCGTCGTCGTTGGCGTGCG
TGTGCTGCTTGCCCGCGTTCAAGCTACCCCCGCGGCAGCTCTTCACGGGC
TGCATCTCCGGCTGGGGCAACTTCATCATGGTGCTGCCTCTCCTCCCCTT
CGTCTTCGCGGGAGCTGTTATTGCTGGCGTCGTGTGAGTCGTTGGCTGCG
CTGTATGATAGCTGTCCTTGTGCACTTTTACCTACTGCACAGCTTTTCTG
ATTGGAGCGTCTACCTACCCGAAAGGAGTAGATTGGCGTCCAATTGAAGG
GATGACAACACACACACACGTCACACACACATCTTTTTGAGTACCTGGTA
GATGTTATGAGCATTCGTCCGTGTTCCGCACAAGCCTTTTGTTTTTGGTG
CTTTTTGTGTCAAATCGATCCAGGAACCATCAACACGTGCTCGTTCATGA
CGACAACTCTGTACGACACTGCGGCTGCTGTGCTGTCTCGCGTTTCCGTG
TCTTGCCTACCGGCGCCCCATCACTTTTGTTCCTTCATATGTACCTCGCT
CCGGGTAGTACATACATCCAAAGCCTTCATCGCCCCAGGGGGTATTGACC
AATCAGGAAACTGCGTGCCACTTTTCCTCTAGCTAATACTCGGAGTATGA
GATGAAGGGTTTGGTAGTACACACGCCGAGTGATTCACTCTCTTTGTTTT
AGCGACACCGGAGCTGTTTGGAGAGTATCTGTCGAGGTGGTTGCAGCGGC
GGCGGCGCAGCTGCCCGGAAAAACCCGCTGCTCCACCCCGTCGTGCTATT
CCGTGTGCATACCCTACCATAAGGCTGGTAGCACCAGCGAACGCTGCTGT
TGTGCTCACGCGCAAGCGAGCCGTTTGTGGCTGCTCTGGAGTTTCGTAAA
CTACTCACGCTCTCGCTGGTTTCAGTGCATTCGTGAGCGTACCGCACGCA
CGAGGCAAGTGCATTCCCCTTTCCTCCCTCTCTTACTCCTTTTCTTGCCC
CCGCCCCCGCAACCCGCAACGACCTCGTTTTGCCGGTCGCTCGCTGCTCA
TCCCCATCGGTTCTCTGCCGCGATGCGCGCCGCGATACTTCAGGTACATT
CTCACGCTCCCGTCCCGAATCTTCGCGGCGGTCAGCCGCAAGTGCCGCTC
TTGGAAGAGAAGGGTGACCATGCCCAACCGCCCGACATCTGGCAACAGCG
CTAGCAACAGCGGCAGCGACGGTGTAGAGGGGGGAACAGAGGGCAGCGGC
AGCGGAAGCGGCAGTGCCGGTGTCGGCGAAGGCGGCGACCCCTGCTCCCT
GGAAAGCGGGACAATCGGCACAGCTGGTATCGAAGCAGCGGATGCGGACG
TGGAAAGCGGTAGTGGTGCAAGCGAGTTCAGGGTACCGGTACCTCCTGCG
GCGACGGCGGCGGCGGAGGTTTCGACGGCAACGAAGCCTTCGGCAGGGGC
GATGTCGTCGACGCGTGGGACCTTTGCTGAGGTGCTTGGAGCCCAGCGGG
GAAGTCGGCAGATGCCGCCACCCCTGCAGCTGCTGCCGGAGTGGCGTGAA
GAGGAACAGCTGCAGGGGGAGCAGCGGAAGCGGCGAGAGGAGGAAAGGGG
AAGGGACGAGGAGGCGGAGGTGGAGAAGGGACTTCCATGTTCGTCGAAGC
TTCTGCCTCCAGAACGCCACAACGTCGGTGTTGGCGGCTGCGGCGGTGCG
TTGGGGGACGGAGTTGTTCTGCCCCAGTCGGCGCTGCCGAGAGATTCGCC
GATGTCCCCAGCAGCACCGCGACCTTTCCCAAGGTCATCGGTGGTGGCGG
TGCCTGCCACAGTCAAGAATAGCAGCAGCAGACGCAGCGAGGGCAGCGGC
GGCGGCGGTAGCGGCGGTGACGGCGAGACCTTTGCAACACCGCCTTCACA
TCTCGGAGCGCGACAGACGGGGGGGGCTCGGCTTGGAGCGTCTCCTCTGC
CGGCGATGGTGTCTTCATCCTCGTATGCTGCTGGTGCTGCAGCTCTTTCA
CTAACGGCGGGGGTACGGGCGGCAGCACTCCGGGATGACATCAGCGCTAA
CGCTGATTGTGATGGTGGTGATGAAGAGCACGAGGGCATACGTCATGATG
TTTCCAGCAAATGTTCAGCAGGGGTAGGCGCAGCCGTCAACAGCAATAAT
ACTAGCGCACCGGCAGCCGCGCCGTTTTCGTTGCCTGTGGACCGCGAAGC
CCGGACTGTCTTTGCAGCAGCAACAGCAGCAACAGCAACAGCCGGGGGGA
AACGGAACCGTGGTGATTGCGGTCGCGTATAATATATTTCAGAGAGAAAG
GCAAAGAGTGCCCGCGGTTTTCCTACTGTTCAATTGTGTCGCCGCTAATC
TTATTGTGGGATAGTATTCCATCAAAAAGCCCGCCGCAGGCGGCGGAGAC
TTTTTGAGCTTTACCACCACAAAGATGGGATGGGAATCATTTTCTATGAT
GATGGTGATATGATGGGATGGGAACCATGAAGAAATGCGGTGATCCCACT
CGTGAAAAAATAGTCGGCCACCGGTTGCCGGCAGATGAACAGGATACGAT
ATGCGCGGGGTGGTCGTGCGAGAGCAGGCGGCGGCAAGCGGCAGATGCGT
CGGTATGACGAGCATTGATGCTTTTTGTTCTTGTTCTTTTGAGTCGGCAT
TTGAAATTGAATCGGAAGCAAGGTTTGAAACCAAGCCCGATGTTGATTTT
TTTTGTGTTGTAGGAAACTTGATTGAACAAATAATGAATGCGTGCTGTGT
GAAAGTGGGGGCTTGGGTCGGCTTTTCCGGACAAGGGGATGCCGTATCGG
TTTTAGATGTGAGTACGAGTGAAGCGACGCTGACATGTAGTGTGTTGAAA
TTGTGTATTTTTTTCATGTTCTGTCGTTTGCATACTGCATACTTCTGTAT
ATAGAGAATGGACGACTCCACTCAAATTCACACCTAACCGTCCTTTCTTC
CTTTATTTGTTTGCCTTGAATGAGCACCGCTACTGCAGCCTGTAGAGAGA
AGTAGGACCAGGGAGAACGAGAGAGAGAGAGGGCGAGCAGGTGCAGAGAG
AGCAGATGCAGAGACAGAGACATACGTGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:801290..806669-

>mRNA_P-littoralis_Contig21.213.1 ID=mRNA_P-littoralis_Contig21.213.1|Name=mRNA_P-littoralis_Contig21.213.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1860bp|location=Sequence derived from alignment at P-littoralis_Contig21:801290..806669- (Pylaiella littoralis U1_48)
ATGAGTCGAAAATACACGCGGTTTCTCTTTTTTCGAGAGCACAAAACTGC
GCGAGAGTGTCCGAGATGCAGCAGCCTGTCGGTGGGGGATCCGTTGACGT
CTTCGGAGATGCGGTGCAGCGGGTGCGCTGCCGTATTCTGCTACGAGCAC
GGCGGGGCGCACGAGGGGAGGAGCTGCGCGGAGTACATCGAATCCACCGC
CGACGAAACTCACCGCACAATGGCACTAATCGGAAGGCTGACGAAGAAGT
GCCCGGGGTGTCAAGCACCGGTCGAAAAACTCGGCGGTTGCAACCAGATG
GTTTGCCTGCACTGCCATTGCAGCTTCTGCTGGATCTGCATGGAGCAGGT
CGACAGGGGAACGTTTCCGGTCCACTTTCAGTGGTGGAATGTCCGGGGTT
GTCCGAACCAGCAGCTGCAGGAAGACGCTGAGCGGTCAGAGGGCGGCAGG
CAATGCCTCAAGGCGCTGTCCGTTCTGCAGATCATCGTGGTGGGACCTCT
CGCGCTGCTGCTGACGGTGGCGTCGTCGTTGGCGTGCGTGTGCTGCTTGC
CCGCGTTCAAGCTACCCCCGCGGCAGCTCTTCACGGGCTGCATCTCCGGC
TGGGGCAACTTCATCATGGTGCTGCCTCTCCTCCCCTTCGTCTTCGCGGG
AGCTGTTATTGCTGGCGTCGTGTACATTCTCACGCTCCCGTCCCGAATCT
TCGCGGCGGTCAGCCGCAAGTGCCGCTCTTGGAAGAGAAGGGTGACCATG
CCCAACCGCCCGACATCTGGCAACAGCGCTAGCAACAGCGGCAGCGACGG
TGTAGAGGGGGGAACAGAGGGCAGCGGCAGCGGAAGCGGCAGTGCCGGTG
TCGGCGAAGGCGGCGACCCCTGCTCCCTGGAAAGCGGGACAATCGGCACA
GCTGGTATCGAAGCAGCGGATGCGGACGTGGAAAGCGGTAGTGGTGCAAG
CGAGTTCAGGGTACCGGTACCTCCTGCGGCGACGGCGGCGGCGGAGGTTT
CGACGGCAACGAAGCCTTCGGCAGGGGCGATGTCGTCGACGCGTGGGACC
TTTGCTGAGGTGCTTGGAGCCCAGCGGGGAAGTCGGCAGATGCCGCCACC
CCTGCAGCTGCTGCCGGAGTGGCGTGAAGAGGAACAGCTGCAGGGGGAGC
AGCGGAAGCGGCGAGAGGAGGAAAGGGGAAGGGACGAGGAGGCGGAGGTG
GAGAAGGGACTTCCATGTTCGTCGAAGCTTCTGCCTCCAGAACGCCACAA
CGTCGGTGTTGGCGGCTGCGGCGGTGCGTTGGGGGACGGAGTTGTTCTGC
CCCAGTCGGCGCTGCCGAGAGATTCGCCGATGTCCCCAGCAGCACCGCGA
CCTTTCCCAAGGTCATCGGTGGTGGCGGTGCCTGCCACAGTCAAGAATAG
CAGCAGCAGACGCAGCGAGGGCAGCGGCGGCGGCGGTAGCGGCGGTGACG
GCGAGACCTTTGCAACACCGCCTTCACATCTCGGAGCGCGACAGACGGGG
GGGGCTCGGCTTGGAGCGTCTCCTCTGCCGGCGATGGTGTCTTCATCCTC
GTATGCTGCTGGTGCTGCAGCTCTTTCACTAACGGCGGGGGTACGGGCGG
CAGCACTCCGGGATGACATCAGCGCTAACGCTGATTGTGATGGTGGTGAT
GAAGAGCACGAGGGCATACGTCATGATGTTTCCAGCAAATGTTCAGCAGG
GGTAGGCGCAGCCGTCAACAGCAATAATACTAGCGCACCGGCAGCCGCGC
CGTTTTCGTTGCCTGTGGACCGCGAAGCCCGGACTGTCTTTGCAGCAGCA
ACAGCAGCAACAGCAACAGCCGGGGGGAAACGGAACCGTGGTGATTGCGG
TCGCGTATAA
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