prot_P-littoralis_Contig21.198.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig21.198.4
Unique Nameprot_P-littoralis_Contig21.198.4
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length299
Homology
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BLAST of mRNA_P-littoralis_Contig21.198.4 vs. uniprot
Match: D7FNJ2_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.890e-91
Identity = 199/309 (64.40%), Postives = 216/309 (69.90%), Query Frame = 0 
Query:    1 MSGEGAFFPDA-GGSSGKATDPSVAAAAGYADAAGSPRPPPGAYGMPEPAGSYNLGGSGXXXXXEQFSXXXDGGDLFXXXXXXXXXXXXXXXXXPFXXXGEQFG------EQFGXXXXXXXGEVDQFSGMPLQASSTLYQPKPTDPYSLEEAAAVIETAQNQFDVVVKERAEKEAAQAAEVKKRAEEELDGFYDTRTDEVARRQARSREQEEAFLKVVSASIEESASNPWARICDLIDLKKPVVSSRPSSSGGAXXXXXXXSVS-RKGLSR---GMDEDNVFRATEKMRSLIIQMKADTAEGNAGDDTG 298
            MSGE  FFPDA GGSSG+A DP  AA+AG+ DA     PPP AYGM E A +Y+LGG G             GGD F                      GEQFG      E   XXXXXXX   D F G+PLQASST YQPKPTDP SLEEAA V+E AQ+QFD VVKERAEKEAA+AAEVK+ AEEELDGFYD RTDEVARRQARSREQEE FLK VSASIEES SNPWARICDL+DLKKPV+S++ S S GA XXXXXX    RKG +    GM+E+ VFRATEKMRSLIIQMKADTAE NAG DTG
Sbjct:    1 MSGEDPFFPDATGGSSGEAADPGAAASAGFVDAGS---PPPVAYGMQETA-AYDLGGGG-------------GGDQFGVVGD-----------------GEQFGGGXXXXEGLXXXXXXXXXXGDHFEGVPLQASSTPYQPKPTDPCSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGXXXXXXXXXXRKGSATAQSGMEEEEVFRATEKMRSLIIQMKADTAESNAGGDTG 275
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.198.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNJ2_ECTSI1.890e-9164.40Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 161..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..136
IPR000996Clathrin light chainPFAMPF01086Clathrin_lg_chcoord: 137..234
e-value: 2.9E-12
score: 47.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:744736..751909 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.198.4mRNA_P-littoralis_Contig21.198.4Pylaiella littoralis U1_48mRNAP-littoralis_Contig21 744011..752082 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig21.198.4 ID=prot_P-littoralis_Contig21.198.4|Name=mRNA_P-littoralis_Contig21.198.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=299bp
MSGEGAFFPDAGGSSGKATDPSVAAAAGYADAAGSPRPPPGAYGMPEPAG
SYNLGGSGGGGGGEQFSGGGDGGDLFGGGSGVQFSGGGGGGGDPFGAGGE
QFGEQFGGGGGGGGGEVDQFSGMPLQASSTLYQPKPTDPYSLEEAAAVIE
TAQNQFDVVVKERAEKEAAQAAEVKKRAEEELDGFYDTRTDEVARRQARS
REQEEAFLKVVSASIEESASNPWARICDLIDLKKPVVSSRPSSSGGAGGG
SGSGSVSRKGLSRGMDEDNVFRATEKMRSLIIQMKADTAEGNAGDDTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain