mRNA_P-littoralis_Contig21.189.5 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI) HSP 1 Score: 1068 bits (2763), Expect = 0.000e+0 Identity = 799/1074 (74.39%), Postives = 861/1074 (80.17%), Query Frame = 3
Query: 414 AARPEPSWVHDPSETRVKIWMRAAAQRGDHDRVAMYLRKYREGKALKRKVPRIAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRA--GQRKXXXXXXXXXXXXXXXXXIGGREGAP--DLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEMQEKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSMLRRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDELVASGDGRLRPXXXXXXXXXTVFSTAGMLPRALELLEEAKAEGLRPDVVTYSTLIRACERSMPSQPDLAMXXXXXXXXXXXXXXXXXXVSVVISLGRSGRPLECLDVLSSMHDKGTPPDAICYHAVQRVLDRWDCAEEASALFEEMNR--ERVALVPAIAEETYCCGIRALEKLGKWSEAVSLLEEWREQGAYDVDNDKMYDQWYLALSLLSTGGLPEGTDIKTARAAIVSAARGGLAEEALAIIRSMEAMEFELGVVEYGAAIEAFERAGKPERGLEMFDEMIAAGVEPDVLCYAAATRCCCRRLDWAAAISFLETTLREGLLPTAKTFETVAGLCRNSGRHEELWDLKELMRDIVVDGGGLARPGSSIYVSLIRTCGAARRPDLVLRCLAEMHADQAPGKSPGTLSLDEPYTISAAIGALSACDENAEADRIYAGAIQRRILPDPASGRTWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSGA-----AAADEMDSGRRTPETXXXXXXXXXXXXXXXXXXXXXXVP---------SGEESLGRTSYRDSNRSGGRGESSGSSRNGEGAVSRGGDPLLLWVDLRKAPVAVIPSAVRRVVKAIEAMGDVSDGLVVHWAGARGSGEDEKKGADNGGRXXXXXXXXVXXXXXXXXXXXARGKPANAGRRGTVLEAFGRVKPALEVTEPPTNRGQVRVEKEELQRWLREVG 3575
AA PEPSWV DP E+RVK+WMR+AA +GDH+RVAMYLRKYRE K LK ++PRIA+YNTALRALD+C KWRLALSV REMQSDGV PDRDSYFFV+SACS+RGEAKTALALLAEM+A XXXXXXXXXXX + +GAP DLLLYAVV+KACAWGK W+QAI LLD+MSA GV PNVVVVNTALSACAKCGQV+RATQLL+EMQEKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VL MLRRKG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDELVASGD LR XXXXXXXXX VFS AGMLPRALELLEEAKA+ LR TLIRACERSMPSQPD+A+ V V ISLGRS RPLECLD+L SMH KGTPPDAICY AV +VLDRWD AEEAS LFEEM E++AL+PAIAEETYCCGIRALE+LGKWSEAV+LL++WR++G+YD DND+MYDQWY AL LLSTGGLPE TD+KT+RAAIVSAARGGL E+ALAI+RSME+ FELGVVEYGAAIEAFE+AGKPERGLEMFDEMIAAGVEPDVLCYAAATRCCCRRLDWA AISF+ETTLREGLLPT KTFETVAGLCRNSGR+EELWDLKELMRDIVVDGGGLARPGSSIYVSLIR CGAARRPDLVLRCLAEM+ DQAPGKSPGTL+L+EPY +SAAIGALSAC E +EADRIYA AI+RRILPDPA+G+TWAAAXXXXXXXXXXXXXXXXXXXXXX G G AA + RR + VP G SLG RD RG + E V G LWVDLRKAPVAVIPSAVRRVVKA+EA+G V+DGLVV WAGARG+ E XXXXXXX XXXXXXX RGKPANAGRRG VLEAF V+PAL VTEP +RGQVRVE+ ELQRWL+EVG
Sbjct: 114 AAGPEPSWVQDPGESRVKMWMRSAASKGDHNRVAMYLRKYREAKVLKGELPRIALYNTALRALDRCKKWRLALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARXXXXXXXXXXXXXXXXPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQLLQEMQEKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLGMLRRKGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMVETIEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADNDRMYDQWYRALRLLSTGGLPEETDVKTSRAAIVSAARGGLVEDALAIMRSMESRGFELGVVEYGAAIEAFEKAGKPERGLEMFDEMIAAGVEPDVLCYAAATRCCCRRLDWAGAISFVETTLREGLLPTGKTFETVAGLCRNSGRYEELWDLKELMRDIVVDGGGLARPGSSIYVSLIRACGAARRPDLVLRCLAEMNTDQAPGKSPGTLALEEPYMVSAAIGALSACGETSEADRIYADAIRRRILPDPAAGQTWAAAXXXXXXXXXXXXXXXXXXXXXXPGRRRVPGAVGAAIGLGGGEEVTEAATRQQRGVRRRQDGTGYRDGHGRGGSDDDDSGDGRDVPVSPASRRNGDGSSSLGE---RD------RGTPETETTAAEAGVVWGTVAPPLWVDLRKAPVAVIPSAVRRVVKAVEAVGGVTDGLVVQWAGARGASEXXXX--------XXXXXXXXXXXXXXXRATKTRGKPANAGRRGAVLEAFASVEPALGVTEPSNSRGQVRVERRELQRWLQEVG 1170
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A1U8AGA7_NELNU (pentatricopeptide repeat-containing protein At1g76280 isoform X1 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AGA7_NELNU) HSP 1 Score: 65.9 bits (159), Expect = 6.360e-7 Identity = 41/162 (25.31%), Postives = 78/162 (48.15%), Query Frame = 3
Query: 564 PRIAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRAGQRKXXXXXXXXXXXXXXXXXIGGREG-APDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEMQEK 1046
P A+YNT L +L + N+ +A+ V R M+ G+ PD +Y ++ CS ++ALAL++ M R+G P + Y ++K + + +A++LLD+ EG++ +V+++NT L G++ ++E M ++
Sbjct: 577 PGTAIYNTVLHSLVEANESHMAIEVFRNMKLCGLPPDAATYNIMIDCCSITRCFRSALALVSMML-------------------------RDGFCPQICTYTALIKILLANEDFSEALNLLDQAHYEGIQSDVLLINTFLEEAYLKGRIDMMESIVERMHQE 713
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A3B6IRX9_WHEAT (PPR_long domain-containing protein n=21 Tax=Pooideae TaxID=147368 RepID=A0A3B6IRX9_WHEAT) HSP 1 Score: 62.8 bits (151), Expect = 5.610e-6 Identity = 44/167 (26.35%), Postives = 73/167 (43.71%), Query Frame = 3
Query: 537 EGKALKRKVPRIAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRAGQRKXXXXXXXXXXXXXXXXXIGGREGAPDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEM 1037
EG ++ P V+N+ + A + SV + MQ GV+PD SY ++ C E TA + EM+ + D+ Y+ ++K A K+W+ A ++ D+M A G N+V ++ ++A A G V A ++LEEM
Sbjct: 296 EGLLAEKITPNTHVFNSLMNA--NAHSMSYNFSVYKHMQKFGVRPDLASYNILLKTCCNAREFNTAQEIYEEMKKKEHDGILKL--------------------DVFTYSTMMKVFAEAKMWKMASNIKDDMRAVGARLNLVTWSSLINAYANSGLVDGAIEILEEM 440
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A452XFJ6_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XFJ6_AEGTS) HSP 1 Score: 61.2 bits (147), Expect = 7.640e-6 Identity = 42/158 (26.58%), Postives = 69/158 (43.67%), Query Frame = 3
Query: 564 PRIAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRAGQRKXXXXXXXXXXXXXXXXXIGGREGAPDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEM 1037
P V+N+ + A + SV + MQ GV+PD SY ++ C E TA + EM+ + D+ Y+ ++K A K+W+ A ++ D+M A G N+V ++ ++A A G V A ++LEEM
Sbjct: 14 PNTHVFNSLMNA--NAHSMSYNFSVYKHMQKLGVRPDLASYNILLKTCCNAREFNTAQEIYEEMKKKEHDGILKL--------------------DVFTYSTMMKVFAEAKMWKMASNIKDDMRAVGARLNLVTWSSLINAYANSGLVDGAIEILEEM 149
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A6J1IFV2_CUCMA (pentatricopeptide repeat-containing protein At1g76280 isoform X1 n=5 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IFV2_CUCMA) HSP 1 Score: 61.6 bits (148), Expect = 1.260e-5 Identity = 42/158 (26.58%), Postives = 77/158 (48.73%), Query Frame = 3
Query: 576 VYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEM-RAGQRKXXXXXXXXXXXXXXXXXIGGREGAPDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEMQEK 1046
+YNTAL L + + +A + M+ G+ PD ++ ++ CS G K+A ALL+ M R+G P +L Y +VK + + A++LLD+ S+EG+E +VV++NT + + G++ ++E+M+ +
Sbjct: 571 IYNTALHFLVESKEIHMATELFNNMKHSGLFPDAATFEMMIDCCSVIGCLKSAFALLSLMIRSGF-------------------------CPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELDVVIMNTIVQKACEKGRIDVIEFVVEKMKRE 703
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A7S4V3F1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V3F1_9DINO) HSP 1 Score: 61.6 bits (148), Expect = 1.290e-5 Identity = 38/157 (24.20%), Postives = 64/157 (40.76%), Query Frame = 3
Query: 570 IAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRAGQRKXXXXXXXXXXXXXXXXXIGGREGAPDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEMQ 1040
+A+Y+ ++ W + E++ DGVKPD ++ ++ A G + A L E G PD+L Y +++A + +A+ LL+E+ + + N L ACA CG +A A QLL M+
Sbjct: 195 LALYSALIKVYTHARLWHKICDLYAEIRRDGVKPDTVAFGCIIKAAVESGRHELARKLFQE----------------------------SGNPDVLNYMSLIRAAGRERDVARAMRLLEELERSPLSADATAYNCTLEACAACGDLAAAEQLLRRME 323
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A8J5SX58_ZIZPA (PPR_long domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SX58_ZIZPA) HSP 1 Score: 61.2 bits (147), Expect = 1.710e-5 Identity = 42/167 (25.15%), Postives = 75/167 (44.91%), Query Frame = 3
Query: 537 EGKALKRKVPRIAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRAGQRKXXXXXXXXXXXXXXXXXIGGREGAPDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEM 1037
EG + P + V+N+ + + + SV + MQ+ GV PD SY ++ C E A + E++ ++ D+ Y+ ++K A K+W+ A ++ D+M + GV N+V ++ ++A A G V RA ++LEEM
Sbjct: 133 EGLLADKITPNVYVFNSLMNV--NSHSFSYNFSVYKHMQNLGVPPDLTSYNILLKTCCNAKEYNLAQEIYEEIKKKEQDGLLKL--------------------DVFTYSTMMKVFAVAKMWKLASNIKDDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEM 277
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: I1H6P6_BRADI (PPR_long domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H6P6_BRADI) HSP 1 Score: 60.1 bits (144), Expect = 3.780e-5 Identity = 43/167 (25.75%), Postives = 74/167 (44.31%), Query Frame = 3
Query: 537 EGKALKRKVPRIAVYNTALRALDKCNKWRLALSVLREMQSDGVKPDRDSYFFVVSACSRRGEAKTALALLAEMRAGQRKXXXXXXXXXXXXXXXXXIGGREGAPDLLLYAVVVKACAWGKLWRQAIHLLDEMSAEGVEPNVVVVNTALSACAKCGQVARATQLLEEM 1037
EG ++ P V+N+ + A + LSV + MQ GV PD SY ++ C E +A + EM+ ++ D+ Y+ ++K A K+W+ A ++ ++M A G N+V ++ ++A A G V A ++LEEM
Sbjct: 296 EGLLAEKITPNTHVFNSLMNA--NAHSLSYNLSVYKHMQKLGVSPDLASYNILLKTCCNAREFDSAQEIYEEMKKKEQNGLLKL--------------------DVFTYSTMMKVFAEAKMWKMASNIKEDMRAVGARLNLVTWSSLINAYANSGLVDGAIEILEEM 440
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Match: A0A4P1RLV2_LUPAN (Uncharacterized protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RLV2_LUPAN) HSP 1 Score: 58.9 bits (141), Expect = 8.120e-5 Identity = 48/161 (29.81%), Postives = 70/161 (43.48%), Query Frame = 3
Query: 1527 FSTAGMLPRALELLEEAKAEGLRPDVVTYSTLIRACERSMPSQPDLAMXXXXXXXXXXXXXXXXXXVSVVISLGRSGRPLECLDVLSSMHDKGTPPDAICYHAVQRVLDRWDCAEEASALFEEMNRERVALVPAIAEETYCCGIRALEKLGKWSEAVSLLE 2009
F GML A L EE ++ L PDV T+ TLI A + M D A+ V L +SG+ ++C VLS M +K PD CY V + L D +++ L +E+ R + + P + E I K+G+ E LL+
Sbjct: 388 FCENGMLSEAETLFEELCSKSLSPDVPTHKTLIDAYLK-MERIGD-ALRVLNRMVDAGLRVVASFGNRVFDELIKSGKAIDCAQVLSKMGEKDPKPDPTCYEIVIKGLCAGDLLDKSQELLDEVMRYGIGVTPTLREFV----IETFMKVGRGGEIERLLD 542 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.189.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig21.189.5 >prot_P-littoralis_Contig21.189.5 ID=prot_P-littoralis_Contig21.189.5|Name=mRNA_P-littoralis_Contig21.189.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1186bp MFRHWAALHVSPRFAHFQLDGDFDPLASPGRSGTSLCNISDRAGRVARVAback to top mRNA from alignment at P-littoralis_Contig21:690282..709756- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig21.189.5 ID=mRNA_P-littoralis_Contig21.189.5|Name=mRNA_P-littoralis_Contig21.189.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=19475bp|location=Sequence derived from alignment at P-littoralis_Contig21:690282..709756- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig21:690282..709756- >mRNA_P-littoralis_Contig21.189.5 ID=mRNA_P-littoralis_Contig21.189.5|Name=mRNA_P-littoralis_Contig21.189.5|organism=Pylaiella littoralis U1_48|type=CDS|length=3558bp|location=Sequence derived from alignment at P-littoralis_Contig21:690282..709756- (Pylaiella littoralis U1_48)back to top |