prot_P-littoralis_Contig21.187.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig21.187.4
Unique Nameprot_P-littoralis_Contig21.187.4
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length372
Homology
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 541 bits (1393), Expect = 2.940e-191
Identity = 285/372 (76.61%), Postives = 315/372 (84.68%), Query Frame = 0
Query:    1 MDRYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVCSCWNPAACGSKGNXXXXXXXXXXXXXXXXXXXAEEDDGSRKQAQE-DSLDVGPLAVSAAAGASTNALKRPFRAMYEQRGRLFTVEFLERRAAQGVTLETLKPALV 371
            MDRY+G+TMFCKECVAESDI+VDPRAGEIICRTCAVVIGERCIDDGAEW+T+A+DS+NGR DPNRCG  AAASPLLSAKSGMNT+IEGG+D KLTA+LQ+LQG+AV+ES SERALK+DFF KVREFG+RLGLTHAMQE ACLLLRKAEDSGLFK KKAERG AICVAVTLLTCRQWRR QTMKEM+T+FNV +KALNKAVKKL NLEIE+ PSLRGEHHIP LCDKLGLP FVSVAA+HAAQQAS+WDLV GMKPSAVAAAAVLLVCSCWNPAACG                       A +    ++ A E ++ DV P AVS A G +  A+KRPFRAMYEQRGRLFTVEFLERRAA+ VTLETLKP L+
Sbjct:    1 MDRYMGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCG--AAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKLSNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGD-------------GVVDRRSKKARKTQQQQQAAVEGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPILM 357          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: T1KYS9_TETUR (Transcription initiation factor IIB n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KYS9_TETUR)

HSP 1 Score: 110 bits (274), Expect = 5.940e-24
Identity = 85/271 (31.37%), Postives = 142/271 (52.40%), Query Frame = 0
Query:    4 YLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI------EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVC 267
            Y  A + C+E   ++ +  D RAG++IC  C +V+G+R ID G+EWRTF+++ +N   DP+R G  AA +PL+   + ++T+I        G   K +++ Q         S SER+L ++ F ++ +   ++ L   + E A LL ++  DS   +  K    +AI  A   ++CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGL + +  AA H A++A + D+V G  P +VAAAA+ + C
Sbjct:    3 YRKAKIGCRE-HPDATLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKANA--DPSRVG--AAENPLME-NNDLSTIIARAEPNSSGEGFKYSSKKQM--------SSSERSL-LNGFKEISDMADKINLAKTIVERANLLFKQVHDS---RTTKGRSNDAIASACLYISCRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETNVDTITTGDFMV-RFCSNLGLSSAIQKAATHIARKAVELDIVPGRSPISVAAAAIYMAC 254          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A6P7VZH4_IXOSC (Transcription initiation factor IIB n=24 Tax=Ixodoidea TaxID=297308 RepID=A0A6P7VZH4_IXOSC)

HSP 1 Score: 109 bits (272), Expect = 1.440e-23
Identity = 88/266 (33.08%), Postives = 139/266 (52.26%), Query Frame = 0
Query:    6 GATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGR-----DQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 265
             A +FC +   ++ +  D RAG++IC  C +V+G+R +D G EWR F ++ SN  +DP R G  A+ +PLL+  S + T+I  G      D+  TA+ Q  + +    S S+RAL V+ F ++     R+ LT  + + + LL ++  D    K  K    +AI  A   + CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGLP+ V  AA H A++A + D+V G  P +VAAAA+ +
Sbjct:    9 NARVFCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSN--NDPARVG--ASENPLLNG-SDLATMIGKGTGDASFDESGTAKYQNRKTM----SSSDRAL-VNAFREISNMADRINLTKTIVDRSNLLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPSSVQKAATHIARKAVELDVVSGRSPISVAAAAIYM 259          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: TF2B_DICDI (Transcription initiation factor IIB n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TF2B_DICDI)

HSP 1 Score: 108 bits (269), Expect = 4.500e-23
Identity = 76/261 (29.12%), Postives = 124/261 (47.51%), Query Frame = 0
Query:    9 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 266
            ++C  C + + DI  D   G++ICR C VV+G+R +D+ +EWRTF++  S G D PNR G     +PLL   +   TV +G +D     RLQ    +   +     A K     ++      + L   +Q+ A  L R  +D    K  K    + +  A   + CRQ   ++T KE+A + NVP K +++  K +      +    ++  E    + C  L LP  V   A+H ++ A    +V G  P +V AA++ +V
Sbjct:   21 LWCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGAD-PNRVG--GPINPLLRDSALSTTVGKGSKDSGTLTRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMV 270          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: F0ZB51_DICPU (Uncharacterized protein gtf2b n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB51_DICPU)

HSP 1 Score: 108 bits (270), Expect = 5.090e-23
Identity = 77/261 (29.50%), Postives = 125/261 (47.89%), Query Frame = 0
Query:    9 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 266
            ++CK C V + DI  D   G++ICR C VV+G+R +D+ +EWRTF++  S G D PNR G     +PLL   +   T+ +G RD     RLQ    +   +     A K     ++      + L   +Q+ A  L R  +D    K  K    + +  A   + CRQ   ++T KE+A + NVP K +++  K +      +    ++  E    + C  L LP  V   ++H ++ A    +V G  P +V AA++ +V
Sbjct:   46 LWCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGAD-PNRVG--GPINPLLRDSALSTTIGKGSRDSSSLNRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMDMGIVAGKSPISVTAASIYMV 295          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A1D1UXA2_RAMVA (Transcription initiation factor IIB n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UXA2_RAMVA)

HSP 1 Score: 107 bits (267), Expect = 7.210e-23
Identity = 85/263 (32.32%), Postives = 134/263 (50.95%), Query Frame = 0
Query:   17 ESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCG-------ECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERG---EAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVCS 268
            E+ +  D RAG+++C  C +V+G+R ID G EWRTF+++S  G DDP+R G       E A  S ++ A SG       G D +   + +  + I    S  +RAL   F  ++     R+ +  ++ + A +L ++  ++      KA RG   EAI  A   + CR+    +T KE+  I  V  K + +  K  L N++        G++ + + C  LGLP  V  AA H A++A+  DL GG  P+ VAAAA+ L C+
Sbjct:   18 EAILVEDYRAGDLVCPMCGLVVGDRVIDVGTEWRTFSNES--GGDDPSRVGGPENPLFEGAELSTMIGAASG-----PAGLDSQGFNKYRNRKTI----SPQDRALTTGF-REITTMAERINMARSIVDQAHMLFKQVYET------KAMRGRATEAIASACLYIACRKEGVPRTFKEICAISRVTKKEIGRCFKLILRNVDTSVDLITTGDY-MSRFCSNLGLPQTVQRAATHIARKATDMDLAGGRAPTTVAAAAIFLACA 261          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A8B6EZI2_MYTGA (Transcription initiation factor IIB n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EZI2_MYTGA)

HSP 1 Score: 107 bits (267), Expect = 7.600e-23
Identity = 82/259 (31.66%), Postives = 128/259 (49.42%), Query Frame = 0
Query:   18 SDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI----------EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 265
            +++  D  AG++IC  C +V+G+R +D G EWRTF+++ S G  DP+R G  AA +PLL     ++T+I          E G+      R           S ++RAL ++ F ++   G RL L   + + A  L ++  D    K  K    +AI  A   + CRQ    +T KE+  +  +  K + +  K  L NLE        G+  + + C  LGLP  V  AA H A++A + DLV G  P +VAA+A+ +
Sbjct:   21 ANLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNEKSTGNKDPSRVG--AAENPLLDG-GDLSTMIQVDPTSMSYDEHGKPMYKNRRTM---------SSADRAL-INAFREIGNMGDRLNLPKMIADRANNLFKQVNDG---KALKGRSNDAIAAACMYIACRQEGVPRTFKEICAVSKISKKEIGRVFKLILKNLETNVELITTGDF-MSRFCSNLGLPTSVQKAATHIARKAVEMDLVAGRSPISVAASAIYM 262          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: UPI0006B0CFC9 (transcription initiation factor IIB-like n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0CFC9)

HSP 1 Score: 104 bits (260), Expect = 6.720e-22
Identity = 87/265 (32.83%), Postives = 135/265 (50.94%), Query Frame = 0
Query:    7 ATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGR-----DQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 265
            A +FC     ++ +  D RAG++IC  C +VIG+R +D G EWRTF ++ S   +DP R G  AA +PLL+  S ++TV+  G      D+   A+ Q  + +    S S+RAL  + F ++     R+ LT  + + A  L ++  D    K  K    +AI  +   + CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGLP  V  AA H A++A + D+V G  P +VAAAA+ +
Sbjct:    9 AKIFCPA-HPDAPLIEDYRAGDMICPECGLVIGDRVVDVGTEWRTFNNEKST--NDPTRVG--AAENPLLNG-SDLSTVVGRGTGDASFDESGVAKYQNRRTM----SSSDRAL-TNAFREINNMADRINLTKTIVDRANSLFKQVHDG---KTLKGRSNDAIASSCLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPNTVQRAATHIARKAVELDIVPGRSPISVAAAAIYM 258          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: UPI000C6DCA9B (transcription initiation factor IIB-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DCA9B)

HSP 1 Score: 104 bits (260), Expect = 7.180e-22
Identity = 85/249 (34.14%), Postives = 130/249 (52.21%), Query Frame = 0
Query:   23 DPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI-----EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 265
            D RAG++IC  C +V+G+R ID G+EWRTF+D+ ++   DP R G  AA +PLL+  S ++TVI     E   D+    + Q  + +    S S+RAL ++ F ++     R+ L   + + A  L ++  D    K  K    +AI  A   + CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGLPA V  AA H A++A + D+V G  P +VAAAA+ +
Sbjct:   28 DYRAGDMICPHCGLVVGDRVIDVGSEWRTFSDEKADS--DPCRVG--AAENPLLNG-SDLSTVIGRGSGEASFDESGLPKYQNRRTM----SSSDRAL-INAFREINNMADRINLPKTIVDRANNLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPASVQKAATHIARKAVEADIVPGRSPISVAAAAIYM 262          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A0B6ZVU2_9EUPU (Transcription initiation factor IIB (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZVU2_9EUPU)

HSP 1 Score: 104 bits (259), Expect = 9.900e-22
Identity = 87/271 (32.10%), Postives = 133/271 (49.08%), Query Frame = 0
Query:    3 RYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPL-----LSAKSGMNTVIEGGRDQ--KLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 265
            R+L A +FC+E   ++++  D  AG++IC  C +V+G+R ID G+EWRTF    SN +D  +     AA +PL     +S    M T  +  RD+  K   + +R Q      S S+RAL   +   + +   RL L   + + A  L ++  DS   K  K    +AI  A   + CRQ    +T KE+  +  +  K + +  K  L NLE        G+  + + C  LGL   +  AA H A++A   DLV G  P +VAAAA+ +
Sbjct:    7 RHLAAQVFCRE-HPDAELVEDYHAGDMICPVCGLVVGDRVIDVGSEWRTF----SNEKDSKDNSRVGAAENPLFEGGDMSTMIAMGTGNDSLRDEFGKPMYKNRRTQ-----MSSSDRALHTAY-RDIGQMADRLNLPKMLVDRASTLFKQVHDS---KLLKGRSNDAISSACMYIACRQDGVPRTFKEICAVSKISKKEIGRVFKLILKNLETNVNLITTGDF-MSRFCSNLGLSPTIQKAATHIARKAVDMDLVPGRSPISVAAAAIYM 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE2.940e-19176.61TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
T1KYS9_TETUR5.940e-2431.37Transcription initiation factor IIB n=1 Tax=Tetran... [more]
A0A6P7VZH4_IXOSC1.440e-2333.08Transcription initiation factor IIB n=24 Tax=Ixodo... [more]
TF2B_DICDI4.500e-2329.12Transcription initiation factor IIB n=1 Tax=Dictyo... [more]
F0ZB51_DICPU5.090e-2329.50Uncharacterized protein gtf2b n=1 Tax=Dictyosteliu... [more]
A0A1D1UXA2_RAMVA7.210e-2332.32Transcription initiation factor IIB n=1 Tax=Ramazz... [more]
A0A8B6EZI2_MYTGA7.600e-2331.66Transcription initiation factor IIB n=3 Tax=Mytilu... [more]
UPI0006B0CFC96.720e-2232.83transcription initiation factor IIB-like n=2 Tax=L... [more]
UPI000C6DCA9B7.180e-2234.14transcription initiation factor IIB-like isoform X... [more]
A0A0B6ZVU2_9EUPU9.900e-2232.10Transcription initiation factor IIB (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 46..59
score: 45.24
coord: 24..44
score: 41.9
coord: 166..185
score: 31.67
coord: 253..269
score: 28.63
coord: 219..237
score: 34.74
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 9..269
NoneNo IPR availableGENE3D1.10.472.170coord: 10..206
e-value: 6.5E-39
score: 135.8
NoneNo IPR availableGENE3D1.10.472.10coord: 216..361
e-value: 1.6E-9
score: 39.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..314
NoneNo IPR availablePANTHERPTHR11618:SF13TRANSCRIPTION INITIATION FACTOR IIBcoord: 9..269
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 6..55
IPR013137Zinc finger, TFIIB-typePFAMPF08271TF_Zn_Ribboncoord: 9..52
e-value: 1.1E-8
score: 34.5
IPR013137Zinc finger, TFIIB-typePROSITEPS51134ZF_TFIIBcoord: 7..39
score: 8.230603
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 215..267
e-value: 1.5E-9
score: 37.7
coord: 120..203
e-value: 1.7E-5
score: 24.7
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 118..205
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 215..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:683140..686512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.187.4mRNA_P-littoralis_Contig21.187.4Pylaiella littoralis U1_48mRNAP-littoralis_Contig21 683100..688104 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig21.187.4 ID=prot_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp
MDRYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWR
TFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQR
LQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDS
GLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAV
KKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLV
GGMKPSAVAAAAVLLVCSCWNPAACGSKGNGGGGGGGGSRGGKGGRKQKA
EEDDGSRKQAQEDSLDVGPLAVSAAAGASTNALKRPFRAMYEQRGRLFTV
EFLERRAAQGVTLETLKPALV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR013137Znf_TFIIB
IPR013150TFIIB_cyclin
IPR036915Cyclin-like_sf