mRNA_P-littoralis_Contig21.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.130.1
Unique NamemRNA_P-littoralis_Contig21.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5KLE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE4_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.270e-50
Identity = 84/141 (59.57%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    4 RWKE--VEADKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAFKLWEELGTVEQPTLISRFGRWAGF 420
            RWK    E   PVSGEE V  RKVKR Y +RTR ASCFCSACQ  +Y+ C+V + YP LV A++ GEVKETVIMDTG APVD      I FG R+K C+M R+TGT W + +S AA K+WEELG  E+P + +RFGRWAGF
Sbjct:  122 RWKGKGAELHHPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQKGEVKETVIMDTGVAPVDEDNSRGIQFGSRRKECKMKRITGTHWQECESAAASKIWEELGRKEEPNIFARFGRWAGF 262          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5JDR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.400e-48
Identity = 82/141 (58.16%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    4 RWKEVEA--DKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAFKLWEELGTVEQPTLISRFGRWAGF 420
            RWK   A    PVSGEE V  RKVKR Y +R+R ASCFCSACQ  +Y+ C V + YP LV A++ GEVKETVIMDTG APVD      I FG R+K C+M R+T T+W + +S AA K+WEELG  E+P +++RFGRWAGF
Sbjct:   99 RWKGKGAGLQDPVSGEEDVTCRKVKRTYRLRSRLASCFCSACQRCEYEQCDVSKTYPRLVPALQEGEVKETVIMDTGVAPVDEDNSRGIQFGSRRKECKMKRITETRWQEYESAAASKIWEELGRKEEPHIVARFGRWAGF 239          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.270e-47
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   34 VSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAFKLWEELGTVEQPTLISRFGRWAGF 420
            VSGEE V  RKVKR Y +RTR ASCFCSACQ  +Y+ C+V++ YP LV A++ GEVKETVIMDTG APVD      I FG RKK C+M R+TGTQW + +S AA K+WEELG  E+P + +RFGRWAGF
Sbjct:  354 VSGEEGVTCRKVKRTYRLRTRLASCFCSACQRFEYEQCYVNKKYPRLVPALQEGEVKETVIMDTGVAPVDEDNSRGIQFGSRKKECKMKRITGTQWQECESAAASKIWEELGGKEEPNIFARFGRWAGF 482          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.210e-45
Identity = 80/141 (56.74%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    4 RWKEVEA--DKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAFKLWEELGTVEQPTLISRFGRWAGF 420
            RWK   A    PV GEE V  RKVKR Y +RTR ASCFCSACQ  +Y+ C+V + YP LV A++ GEVKETVI DTG AP+D      I FG R+K C+M R+TGTQ  + +S AA K+WEE G  E+P + +RFGRWAGF
Sbjct:  198 RWKGKGAGLQDPVPGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQEGEVKETVITDTGVAPLDEDNSRGIQFGSRRKECKMKRITGTQLQECESAAASKIWEERGRKEEPNIFARFGRWAGF 338          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5JQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.020e-39
Identity = 79/141 (56.03%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    4 RWKEVEA--DKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDS-TAAFKLWEELGTVEQPTLISRFGRWAG 417
            RWK   A    P+SGEE V  +KVKR Y++RTR ASCFCSAC+ S+Y+  +V + YP LV AM +G VKETVIMDTG APVD      + F   KK C   R+TGTQW   DS T A K+WEELG  E+P + +RFGRWAG
Sbjct:  580 RWKGQGAGLQDPISGEEDVTCKKVKRTYSLRTRLASCFCSACRRSEYEQYYVSKTYPRLVPAMEDGVVKETVIMDTGVAPVDENSSEGMKFPRYKKYCTKKRITGTQWLDGDSATTASKIWEELGRKEEPNIFARFGRWAG 720          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5JQK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.550e-39
Identity = 76/155 (49.03%), Postives = 94/155 (60.65%), Query Frame = 1
Query:    4 RWKEVEA--DKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAFKLWEELGTVEQPTLISRFGRWAGF*VWSVSRVFVQELW 462
            RWK   A    P+SGEE +  RKVKR  ++RTR ASCFCS C+ S+Y+ C+V + +P LV  M +G VKETVIM TG APVD      I F   KK C+  R TGTQW    S  A K+WEELG  E+P+  S FGRWA   V     + V++ W
Sbjct:  242 RWKGEGAKLQDPISGEEDMTCRKVKRTCSLRTRLASCFCSVCRRSEYEQCYVSKTFPRLVPVMEDGVVKETVIMGTGVAPVDEDASEGIKFPRYKKECKKKRTTGTQWQDGGSATASKIWEELGRKEEPSTFSSFGRWADIYVTCFLYLLVEQCW 396          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.170e-33
Identity = 68/116 (58.62%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 RWKEVEA--DKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAA 345
            RWK   A    PVSGEE V  RKVKR Y +RTR ASCFCSACQ  +Y+ C+V + YP LV A++ GEVKETVIMDTG APVD      I FG R+K C+M  +TGTQW + +S AA
Sbjct:  279 RWKGKGAGLQDPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQQGEVKETVIMDTGGAPVDEDNSRGIQFGSRRKECKMKIITGTQWQECESAAA 394          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5KTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.560e-33
Identity = 69/124 (55.65%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    4 RWKEVEA--DKPVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAFKLWEELG 369
            RWK   A    P+S EE V  RKVKR Y++RTR ASCFCSAC  S+Y+ C+V + YP LV AM++  VKE VIMDTG APVD      I F   KK C+  R+TGTQW + DS  A K+WEELG
Sbjct:  411 RWKAQGAGLQDPISREEDVTCRKVKRTYSLRTRLASCFCSACLRSEYEQCYVSKTYPRLVPAMKDDVVKEPVIMDTGVAPVDENASEGINFPRYKKECKKKRITGTQWQEGDSATASKIWEELG 534          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.370e-29
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   31 PVSGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQ 318
            PVSGEE V  RKVKR Y +RTR ASCFCSACQ  +++ C+V + YP L+ A+R GEVKETVIMDTG APVD      I FG RKK C++ R+TGT+
Sbjct:  614 PVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEHEQCYVSKTYPRLLPALREGEVKETVIMDTGVAPVDEDNSRGIQFGSRKKECKIKRITGTK 709          
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Match: A0A6H5KGU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.400e-26
Identity = 63/105 (60.00%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 GRWKEVEADKPV---SGEEMVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGEVKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARV 306
            GRWK VE   PV   SGEE+VVVRK  R++ +RTR ASCFCSACQ  QY+DC+V+RAYP LV  MR G+VKETVIMDTG A    G    ITF  R+  C  +RV
Sbjct:  607 GRWKGVEGSGPVEPMSGEEVVVVRKETRVHMLRTRLASCFCSACQRFQYEDCYVNRAYPDLVPPMREGKVKETVIMDTGVALESEGK-AGITFRSRQSTCMKSRV 710          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KLE4_9PHAE1.270e-5059.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR7_9PHAE2.400e-4858.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLE6_9PHAE1.270e-4762.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA27_9PHAE4.210e-4556.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK2_9PHAE1.020e-3956.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK7_9PHAE3.550e-3949.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS1_9PHAE1.170e-3358.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ4_9PHAE1.560e-3355.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE8.370e-2961.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGU5_9PHAE2.400e-2660.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:509624..510179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size556
Hectar predicted targeting categorymitochondrion
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790023.1933575-UTR-P-littoralis_Contig21:509623..5097561680790023.1933575-UTR-P-littoralis_Contig21:509623..509756Pylaiella littoralis U1_48UTRP-littoralis_Contig21 509624..509756 -
1680790023.2143686-UTR-P-littoralis_Contig21:510131..5101791680790023.2143686-UTR-P-littoralis_Contig21:510131..510179Pylaiella littoralis U1_48UTRP-littoralis_Contig21 510132..510179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790023.2029839-CDS-P-littoralis_Contig21:509756..5101311680790023.2029839-CDS-P-littoralis_Contig21:509756..510131Pylaiella littoralis U1_48CDSP-littoralis_Contig21 509757..510131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.130.1prot_P-littoralis_Contig21.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 509757..510131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.130.1

>prot_P-littoralis_Contig21.130.1 ID=prot_P-littoralis_Contig21.130.1|Name=mRNA_P-littoralis_Contig21.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MVVVRKVKRIYNVRTRSASCFCSACQDSQYKDCHVHRAYPGLVSAMRNGE
VKETVIMDTGTAPVDGGPLTEITFGPRKKLCEMARVTGTQWHQSDSTAAF
KLWEELGTVEQPTLISRFGRWAGF*
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mRNA from alignment at P-littoralis_Contig21:509624..510179-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.130.1 ID=mRNA_P-littoralis_Contig21.130.1|Name=mRNA_P-littoralis_Contig21.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=556bp|location=Sequence derived from alignment at P-littoralis_Contig21:509624..510179- (Pylaiella littoralis U1_48)
GGAAGATGGAAAGAGGTTGAGGCAGACAAGCCGGTATCGGGCGAGGAGAT GGTTGTTGTGAGGAAGGTAAAAAGGATATACAATGTTAGAACCCGTTCCG CGTCGTGTTTCTGCTCGGCATGCCAGGATTCTCAGTACAAGGACTGCCAC GTACATAGGGCGTACCCGGGTCTTGTTTCCGCAATGAGGAACGGTGAAGT CAAGGAAACCGTTATCATGGACACTGGGACGGCGCCTGTAGATGGAGGCC CACTTACAGAGATCACATTTGGGCCCAGGAAAAAGTTGTGTGAGATGGCT AGGGTAACTGGGACTCAGTGGCACCAGAGTGATTCGACGGCTGCGTTCAA ATTGTGGGAGGAGCTTGGAACGGTGGAACAACCAACACTTATTTCCCGTT TCGGGAGGTGGGCTGGTTTTTAGGTGTGGAGTGTTTCTCGTGTTTTTGTT CAGGAATTGTGGTGGCCTTTATCGTGTGTTTCAAATAATTGTGGTAGCGT CATTATTTATTTTTGGTTGGATTTCAAAAGGTTTGATAATTTGAATGGTG CTGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:509624..510179-

>mRNA_P-littoralis_Contig21.130.1 ID=mRNA_P-littoralis_Contig21.130.1|Name=mRNA_P-littoralis_Contig21.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig21:509624..510179- (Pylaiella littoralis U1_48)
ATGGTTGTTGTGAGGAAGGTAAAAAGGATATACAATGTTAGAACCCGTTC
CGCGTCGTGTTTCTGCTCGGCATGCCAGGATTCTCAGTACAAGGACTGCC
ACGTACATAGGGCGTACCCGGGTCTTGTTTCCGCAATGAGGAACGGTGAA
GTCAAGGAAACCGTTATCATGGACACTGGGACGGCGCCTGTAGATGGAGG
CCCACTTACAGAGATCACATTTGGGCCCAGGAAAAAGTTGTGTGAGATGG
CTAGGGTAACTGGGACTCAGTGGCACCAGAGTGATTCGACGGCTGCGTTC
AAATTGTGGGAGGAGCTTGGAACGGTGGAACAACCAACACTTATTTCCCG
TTTCGGGAGGTGGGCTGGTTTTTAG
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