mRNA_P-littoralis_Contig21.118.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.118.1
Unique NamemRNA_P-littoralis_Contig21.118.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig21.118.1 vs. uniprot
Match: D7FNP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.840e-13
Identity = 57/141 (40.43%), Postives = 75/141 (53.19%), Query Frame = 2 
Query:  260 RLDNNLEENRQRIETNSTRIFHLATEVEGLAKSIQERNKTATPLASPRVETGEVFPVELANLPPKQQRT-GETTAATAAVLPQQRQEAIEIRRSEGKSQNHARATRTRTHVDLEETHEEPCESRSGGDQDHRAPCRPGVLD 679
            RLD +LEE R+ IETNSTRIFHLA EVEGL  + +     A  LA  R ETG++F VE+A+ PP+QQ   G TTA        +R++ I  R             + R     ++  + P  S     ++H   CRPGVLD
Sbjct:  271 RLDESLEETRELIETNSTRIFHLAAEVEGLVSASKASPAAARRLALAREETGDIFSVEVADFPPEQQEGHGRTTATPPKATVGKRKDTIRER------------LKPRVGRAKKDPGKTPHLSTFAEGENHHVSCRPGVLD 399
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BLAST of mRNA_P-littoralis_Contig21.118.1 vs. uniprot
Match: A0A6H5L344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L344_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.660e-12
Identity = 59/136 (43.38%), Postives = 71/136 (52.21%), Query Frame = 2 
Query:  275 LEENRQRIETNSTRIFHLATEVEGLAKSIQERNKTATPLASPRVETGEVFPVELANLPPKQQRT-GETTAATAAVLPQQRQEAIEIRRSEGKSQNHARATRTRTHVDLEETHEEPCESRSGGDQDHRAPCRPGVLD 679
            L+E R+ IETNSTRIFHLA EVEGLA + +     A  LA  R ETG+VF VE+A+  PKQQ   G  TA        +R++ I  R   G         R +T        E P  S     + H APCRPGVLD
Sbjct:  165 LKETRELIETNSTRIFHLAAEVEGLASASKASPAAARRLALAREETGDVFSVEVAHFSPKQQEGHGRATATPPTATVGERKDDIRERLKPG-------VGRAKTGPG-----ETPNLSTFAEGEIHHAPCRPGVLD 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNP9_ECTSI1.840e-1340.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L344_9PHAE2.660e-1243.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:458921..459599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size681
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004700.1
Cds size660
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790022.7084906-CDS-P-littoralis_Contig21:458920..4595801680790022.7084906-CDS-P-littoralis_Contig21:458920..459580Pylaiella littoralis U1_48CDSP-littoralis_Contig21 458921..459580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790022.722574-UTR-P-littoralis_Contig21:459580..4595991680790022.722574-UTR-P-littoralis_Contig21:459580..459599Pylaiella littoralis U1_48UTRP-littoralis_Contig21 459581..459599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.118.1prot_P-littoralis_Contig21.118.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 458921..459580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.118.1

>prot_P-littoralis_Contig21.118.1 ID=prot_P-littoralis_Contig21.118.1|Name=mRNA_P-littoralis_Contig21.118.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp
MAYVEELITHAEEEIARVEKVAVSATTEAQRAVATAAEASERSEKATTQG
MHVDERCQQVEQKCRQADDKRQRILNKCYDRLDNNLEENRQRIETNSTRI
FHLATEVEGLAKSIQERNKTATPLASPRVETGEVFPVELANLPPKQQRTG
ETTAATAAVLPQQRQEAIEIRRSEGKSQNHARATRTRTHVDLEETHEEPC
ESRSGGDQDHRAPCRPGVLD
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mRNA from alignment at P-littoralis_Contig21:458921..459599-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.118.1 ID=mRNA_P-littoralis_Contig21.118.1|Name=mRNA_P-littoralis_Contig21.118.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=679bp|location=Sequence derived from alignment at P-littoralis_Contig21:458921..459599- (Pylaiella littoralis U1_48)
AGGCTATGGAAACGACAGGATGGCCTACGTAGAGGAACTTATCACGCACG
CTGAAGAGGAAATTGCGCGGGTCGAGAAAGTGGCTGTGTCGGCGACTACC
GAGGCGCAGCGTGCCGTCGCGACTGCGGCGGAGGCAAGCGAAAGATCCGA
GAAAGCCACGACTCAGGGCATGCACGTGGACGAGAGGTGTCAGCAAGTAG
AACAGAAATGTCGGCAAGCGGACGATAAACGTCAGCGAATCCTGAACAAA
TGTTACGATCGGTTGGACAATAACCTTGAGGAGAATAGGCAACGAATTGA
AACCAACAGCACGCGTATTTTCCACCTCGCTACTGAGGTAGAAGGGCTTG
CAAAATCAATCCAAGAACGAAACAAGACGGCTACACCGCTAGCATCTCCC
CGCGTAGAGACCGGAGAAGTTTTTCCGGTGGAACTCGCAAACTTGCCCCC
GAAGCAACAGCGCACTGGAGAAACTACTGCCGCTACCGCTGCTGTCCTTC
CCCAACAACGGCAAGAAGCCATAGAGATACGGCGAAGTGAAGGGAAGAGC
CAAAATCATGCAAGGGCCACGAGGACCAGGACACACGTCGACCTGGAAGA
AACACACGAGGAACCGTGTGAATCCAGAAGCGGAGGGGACCAGGACCATC
GTGCCCCCTGTCGACCCGGGGTCCTGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:458921..459599-

>mRNA_P-littoralis_Contig21.118.1 ID=mRNA_P-littoralis_Contig21.118.1|Name=mRNA_P-littoralis_Contig21.118.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig21:458921..459599- (Pylaiella littoralis U1_48)
ATGGCCTACGTAGAGGAACTTATCACGCACGCTGAAGAGGAAATTGCGCG
GGTCGAGAAAGTGGCTGTGTCGGCGACTACCGAGGCGCAGCGTGCCGTCG
CGACTGCGGCGGAGGCAAGCGAAAGATCCGAGAAAGCCACGACTCAGGGC
ATGCACGTGGACGAGAGGTGTCAGCAAGTAGAACAGAAATGTCGGCAAGC
GGACGATAAACGTCAGCGAATCCTGAACAAATGTTACGATCGGTTGGACA
ATAACCTTGAGGAGAATAGGCAACGAATTGAAACCAACAGCACGCGTATT
TTCCACCTCGCTACTGAGGTAGAAGGGCTTGCAAAATCAATCCAAGAACG
AAACAAGACGGCTACACCGCTAGCATCTCCCCGCGTAGAGACCGGAGAAG
TTTTTCCGGTGGAACTCGCAAACTTGCCCCCGAAGCAACAGCGCACTGGA
GAAACTACTGCCGCTACCGCTGCTGTCCTTCCCCAACAACGGCAAGAAGC
CATAGAGATACGGCGAAGTGAAGGGAAGAGCCAAAATCATGCAAGGGCCA
CGAGGACCAGGACACACGTCGACCTGGAAGAAACACACGAGGAACCGTGT
GAATCCAGAAGCGGAGGGGACCAGGACCATCGTGCCCCCTGTCGACCCGG
GGTCCTGGAC
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